BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|30425464 transmembrane protein 105 [Homo sapiens] (129 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|30425464 transmembrane protein 105 [Homo sapiens] 275 7e-75 gi|239740845 PREDICTED: hypothetical protein XP_002344070 [Homo ... 35 0.021 gi|239740737 PREDICTED: hypothetical protein [Homo sapiens] 35 0.021 gi|239740652 PREDICTED: hypothetical protein [Homo sapiens] 35 0.021 gi|11138123 cholinergic receptor, nicotinic, alpha 10 [Homo sapi... 33 0.081 gi|4505349 necdin [Homo sapiens] 31 0.24 gi|239754312 PREDICTED: hypothetical protein XP_002345955 [Homo ... 31 0.31 gi|239748874 PREDICTED: hypothetical protein XP_002346837 [Homo ... 31 0.31 gi|239742903 PREDICTED: hypothetical protein XP_002342672 [Homo ... 31 0.31 gi|169204521 PREDICTED: hypothetical protein [Homo sapiens] 30 0.40 gi|169205149 PREDICTED: hypothetical protein [Homo sapiens] 30 0.40 gi|169204400 PREDICTED: hypothetical protein [Homo sapiens] 30 0.40 gi|239756926 PREDICTED: similar to TBC1 domain family, member 3 ... 30 0.53 gi|89886237 cyclin I family, member 2 [Homo sapiens] 30 0.53 gi|18079216 CASK interacting protein 1 [Homo sapiens] 29 0.90 gi|239755452 PREDICTED: hypothetical protein [Homo sapiens] 29 0.90 gi|239749933 PREDICTED: hypothetical protein XP_002347217 [Homo ... 29 0.90 gi|239744256 PREDICTED: hypothetical protein XP_002343085 [Homo ... 29 0.90 gi|95147356 mitogen-activated protein kinase 15 [Homo sapiens] 28 1.5 gi|98961138 ZXD family zinc finger C isoform 2 [Homo sapiens] 28 1.5 gi|98961133 ZXD family zinc finger C isoform 1 [Homo sapiens] 28 1.5 gi|58218966 hypothetical protein LOC339201 [Homo sapiens] 28 1.5 gi|149944548 neurobeachin-like 2 [Homo sapiens] 28 2.0 gi|171460922 transmembrane protein 132D [Homo sapiens] 28 2.6 gi|20162568 melanoma antigen family C, 3 isoform 1 [Homo sapiens] 28 2.6 gi|29294655 melanoma antigen family C, 3 isoform 2 [Homo sapiens] 28 2.6 gi|87116681 lysophosphatidylcholine acyltransferase 4 [Homo sapi... 27 3.4 gi|55956910 meningioma 1 [Homo sapiens] 27 3.4 gi|134031945 SCO-spondin [Homo sapiens] 27 3.4 gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens] 27 3.4 >gi|30425464 transmembrane protein 105 [Homo sapiens] Length = 129 Score = 275 bits (703), Expect = 7e-75 Identities = 129/129 (100%), Positives = 129/129 (100%) Query: 1 MLLKVRRASLKPPATPHQGAFRAGNVIGQLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSP 60 MLLKVRRASLKPPATPHQGAFRAGNVIGQLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSP Sbjct: 1 MLLKVRRASLKPPATPHQGAFRAGNVIGQLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSP 60 Query: 61 PRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAGGLHLVPSSLSLAACGVVRMKGLW 120 PRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAGGLHLVPSSLSLAACGVVRMKGLW Sbjct: 61 PRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAGGLHLVPSSLSLAACGVVRMKGLW 120 Query: 121 GRGAGIRGR 129 GRGAGIRGR Sbjct: 121 GRGAGIRGR 129 >gi|239740845 PREDICTED: hypothetical protein XP_002344070 [Homo sapiens] Length = 222 Score = 34.7 bits (78), Expect = 0.021 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 19 GAFRAGNVIGQLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSPPRSPWG 66 GA+R G V+G LL W +T +R P +GP + R PWG Sbjct: 169 GAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFG-RDPGKRRPWG 215 >gi|239740737 PREDICTED: hypothetical protein [Homo sapiens] Length = 147 Score = 34.7 bits (78), Expect = 0.021 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 19 GAFRAGNVIGQLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSPPRSPWG 66 GA+R G V+G LL W +T +R P +GP + R PWG Sbjct: 94 GAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFG-RDPGKRRPWG 140 >gi|239740652 PREDICTED: hypothetical protein [Homo sapiens] Length = 196 Score = 34.7 bits (78), Expect = 0.021 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 19 GAFRAGNVIGQLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSPPRSPWG 66 GA+R G V+G LL W +T +R P +GP + R PWG Sbjct: 143 GAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFG-RDPGKRRPWG 189 >gi|11138123 cholinergic receptor, nicotinic, alpha 10 [Homo sapiens] Length = 450 Score = 32.7 bits (73), Expect = 0.081 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Query: 44 RPPTLLQGPRTSPQGSPPRSPWGDCAEPSCLCEMK 78 RPP L P++ G+ P P G C EP CLC + Sbjct: 361 RPPELSPSPQSPEGGAGP--PAGPCHEPRCLCRQE 393 >gi|4505349 necdin [Homo sapiens] Length = 321 Score = 31.2 bits (69), Expect = 0.24 Identities = 14/43 (32%), Positives = 20/43 (46%) Query: 51 GPRTSPQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSG 93 GP +PQ +PP D +P L + R H+ P+ Q G Sbjct: 47 GPTAAPQAAPPPQAPNDEGDPKALQQAAEEGRAHQAPSAAQPG 89 >gi|239754312 PREDICTED: hypothetical protein XP_002345955 [Homo sapiens] Length = 127 Score = 30.8 bits (68), Expect = 0.31 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 16/69 (23%) Query: 43 LRPPTLLQGPRT-----SPQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAG 97 L PP L+G T PQ SPP + E + +R R GPA +S F G Sbjct: 10 LNPPHTLEGATTLALTRGPQASPPG-----------ILEPREKRGRDHGPARPRSAFFPG 58 Query: 98 GLHLVPSSL 106 P SL Sbjct: 59 ERRCPPGSL 67 >gi|239748874 PREDICTED: hypothetical protein XP_002346837 [Homo sapiens] Length = 127 Score = 30.8 bits (68), Expect = 0.31 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 16/69 (23%) Query: 43 LRPPTLLQGPRT-----SPQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAG 97 L PP L+G T PQ SPP + E + +R R GPA +S F G Sbjct: 10 LNPPHTLEGATTLALTRGPQASPPG-----------ILEPREKRGRDHGPARPRSAFFPG 58 Query: 98 GLHLVPSSL 106 P SL Sbjct: 59 ERRCPPGSL 67 >gi|239742903 PREDICTED: hypothetical protein XP_002342672 [Homo sapiens] Length = 127 Score = 30.8 bits (68), Expect = 0.31 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 16/69 (23%) Query: 43 LRPPTLLQGPRT-----SPQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAG 97 L PP L+G T PQ SPP + E + +R R GPA +S F G Sbjct: 10 LNPPHTLEGATTLALTRGPQASPPG-----------ILEPREKRGRDHGPARPRSAFFPG 58 Query: 98 GLHLVPSSL 106 P SL Sbjct: 59 ERRCPPGSL 67 >gi|169204521 PREDICTED: hypothetical protein [Homo sapiens] Length = 430 Score = 30.4 bits (67), Expect = 0.40 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 56 PQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAGGLHLVPSSLSLAACGVVR 115 P+G P P C E + RRR HEG A G+ A P++ + A G R Sbjct: 311 PRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRA-GRAR 369 Query: 116 MKGLWGRGAGIR 127 +G R G R Sbjct: 370 PRGRRHREHGTR 381 >gi|169205149 PREDICTED: hypothetical protein [Homo sapiens] Length = 430 Score = 30.4 bits (67), Expect = 0.40 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 56 PQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAGGLHLVPSSLSLAACGVVR 115 P+G P P C E + RRR HEG A G+ A P++ + A G R Sbjct: 311 PRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRA-GRAR 369 Query: 116 MKGLWGRGAGIR 127 +G R G R Sbjct: 370 PRGRRHREHGTR 381 >gi|169204400 PREDICTED: hypothetical protein [Homo sapiens] Length = 430 Score = 30.4 bits (67), Expect = 0.40 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 56 PQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAGGLHLVPSSLSLAACGVVR 115 P+G P P C E + RRR HEG A G+ A P++ + A G R Sbjct: 311 PRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRA-GRAR 369 Query: 116 MKGLWGRGAGIR 127 +G R G R Sbjct: 370 PRGRRHREHGTR 381 >gi|239756926 PREDICTED: similar to TBC1 domain family, member 3 [Homo sapiens] Length = 424 Score = 30.0 bits (66), Expect = 0.53 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 13/60 (21%) Query: 6 RRASLKPPATPHQGAFRAGNVIGQLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSPPRSPW 65 ++ L PPA P QG+ + V A TL +G R +P G P R PW Sbjct: 228 KQGDLPPPAKPEQGSSASRPV-------------PASRGGKTLCKGDRQAPPGPPARFPW 274 >gi|89886237 cyclin I family, member 2 [Homo sapiens] Length = 369 Score = 30.0 bits (66), Expect = 0.53 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Query: 50 QGPRTSPQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAW 89 Q PR +PQ PR+ GD E LC +++ + R E W Sbjct: 99 QAPRPAPQSRKPRNLEGDLDERRLLCHLQLAQDR-EARLW 137 >gi|18079216 CASK interacting protein 1 [Homo sapiens] Length = 1431 Score = 29.3 bits (64), Expect = 0.90 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 49 LQGPRTSPQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAGGLHLVPSSLSL 108 L GP T + R P G+ A+P E R+R GP+ G++G L V +S +L Sbjct: 1066 LSGPVTGLLATARRGP-GESADPGPFVEDGTGRQRPRGPSKGEAGVEGPPLAKVEASATL 1124 >gi|239755452 PREDICTED: hypothetical protein [Homo sapiens] Length = 171 Score = 29.3 bits (64), Expect = 0.90 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 12/49 (24%) Query: 21 FRAGNVIG----QLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSPPRSPW 65 F G V G Q +YLL W PP LL+G + Q P R+PW Sbjct: 127 FPKGQVWGCWCPQHVYLLLW--------PPGLLRGEGVAIQPPPYRAPW 167 >gi|239749933 PREDICTED: hypothetical protein XP_002347217 [Homo sapiens] Length = 171 Score = 29.3 bits (64), Expect = 0.90 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 12/49 (24%) Query: 21 FRAGNVIG----QLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSPPRSPW 65 F G V G Q +YLL W PP LL+G + Q P R+PW Sbjct: 127 FPKGQVWGCWCPQHVYLLLW--------PPGLLRGEGVAIQPPPYRAPW 167 >gi|239744256 PREDICTED: hypothetical protein XP_002343085 [Homo sapiens] Length = 171 Score = 29.3 bits (64), Expect = 0.90 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 12/49 (24%) Query: 21 FRAGNVIG----QLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSPPRSPW 65 F G V G Q +YLL W PP LL+G + Q P R+PW Sbjct: 127 FPKGQVWGCWCPQHVYLLLW--------PPGLLRGEGVAIQPPPYRAPW 167 >gi|95147356 mitogen-activated protein kinase 15 [Homo sapiens] Length = 544 Score = 28.5 bits (62), Expect = 1.5 Identities = 28/100 (28%), Positives = 35/100 (35%), Gaps = 19/100 (19%) Query: 47 TLLQGPRTSPQGSP----------------PRSPWGDCAEPSCLCEMKIRRRRHEGPAWG 90 T +QGPR PQ SP PR + + L + E P Sbjct: 381 TPVQGPRPRPQSSPGHDPAEHESPRAAKNVPRQNSAPLLQTALLGNGERPPGAKEAPPLT 440 Query: 91 QSGFLAGGLHLVPSSLSLAACGVVR---MKGLWGRGAGIR 127 S G PS S AA V ++G W RG G+R Sbjct: 441 LSLVKPSGRGAAPSLTSQAAAQVANQALIRGDWNRGGGVR 480 >gi|98961138 ZXD family zinc finger C isoform 2 [Homo sapiens] Length = 710 Score = 28.5 bits (62), Expect = 1.5 Identities = 11/22 (50%), Positives = 13/22 (59%) Query: 52 PRTSPQGSPPRSPWGDCAEPSC 73 PR +PQ S P +P C EP C Sbjct: 161 PRRAPQASGPSTPGYRCPEPQC 182 >gi|98961133 ZXD family zinc finger C isoform 1 [Homo sapiens] Length = 858 Score = 28.5 bits (62), Expect = 1.5 Identities = 11/22 (50%), Positives = 13/22 (59%) Query: 52 PRTSPQGSPPRSPWGDCAEPSC 73 PR +PQ S P +P C EP C Sbjct: 161 PRRAPQASGPSTPGYRCPEPQC 182 >gi|58218966 hypothetical protein LOC339201 [Homo sapiens] Length = 193 Score = 28.5 bits (62), Expect = 1.5 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 27/81 (33%) Query: 49 LQGPRTSPQGS--PPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAGGLHLVPSSL 106 + GP ++PQG+ PRSP +RR+ + P+WG G P++ Sbjct: 1 MSGPPSAPQGALAAPRSP-------------AVRRKGLQAPSWGSPG--------RPAAH 39 Query: 107 SLAACGVVRMKGLWGRGAGIR 127 S ACG WG G R Sbjct: 40 SPWACGPPH----WGPQRGPR 56 >gi|149944548 neurobeachin-like 2 [Homo sapiens] Length = 2754 Score = 28.1 bits (61), Expect = 2.0 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Query: 40 TAWLRPPTLLQGPRTSPQGSPPRSPWGDCAEPS 72 TA PP+ + P TSP+ +PP+ P AEPS Sbjct: 1298 TAGSPPPSSPESP-TSPKPAPPKPPTESPAEPS 1329 >gi|171460922 transmembrane protein 132D [Homo sapiens] Length = 1099 Score = 27.7 bits (60), Expect = 2.6 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 11/42 (26%) Query: 38 LFTAWLRPPTLLQGPRTS---PQGSP--------PRSPWGDC 68 L ++W PPT++ G R S P+G+P P GDC Sbjct: 198 LLSSWFSPPTVVAGRRKSVDQPEGTPVELYYTVHPGGERGDC 239 >gi|20162568 melanoma antigen family C, 3 isoform 1 [Homo sapiens] Length = 643 Score = 27.7 bits (60), Expect = 2.6 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 3/23 (13%) Query: 52 PRTSPQG---SPPRSPWGDCAEP 71 P+ SPQG SPP+SP C+ P Sbjct: 400 PKISPQGPPQSPPQSPLDSCSSP 422 >gi|29294655 melanoma antigen family C, 3 isoform 2 [Homo sapiens] Length = 346 Score = 27.7 bits (60), Expect = 2.6 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 3/23 (13%) Query: 52 PRTSPQG---SPPRSPWGDCAEP 71 P+ SPQG SPP+SP C+ P Sbjct: 102 PKISPQGPPQSPPQSPLDSCSSP 124 >gi|87116681 lysophosphatidylcholine acyltransferase 4 [Homo sapiens] Length = 524 Score = 27.3 bits (59), Expect = 3.4 Identities = 11/27 (40%), Positives = 16/27 (59%) Query: 38 LFTAWLRPPTLLQGPRTSPQGSPPRSP 64 LF+ +LRPP +G +P S P +P Sbjct: 482 LFSTYLRPPHTSRGTSQTPNASSPGNP 508 >gi|55956910 meningioma 1 [Homo sapiens] Length = 1320 Score = 27.3 bits (59), Expect = 3.4 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Query: 45 PPTLLQGPRTSPQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAGGLHLVPS 104 PP Q P+ PQ PP P + SC + R +G A SG L G ++PS Sbjct: 346 PPPQQQPPQQPPQQQPPPPPGLLVRQNSCPPALP---RPQQGEAGTPSGGLQDGGPMLPS 402 >gi|134031945 SCO-spondin [Homo sapiens] Length = 5147 Score = 27.3 bits (59), Expect = 3.4 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Query: 63 SPWGDCAEPSCLCEMKIRRRRHEGPAWGQS-GFLAGGLH 100 SPW C+EP C M +R+ H G++ L GGLH Sbjct: 1757 SPWSVCSEP-CRGTMTRQRQCHSPQNGGRTCAALPGGLH 1794 >gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens] Length = 845 Score = 27.3 bits (59), Expect = 3.4 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 9/73 (12%) Query: 2 LLKVRRASLKPPATPHQGAFRAGNVIGQLIYLLTWSLFTAWL-RPPTLLQGPRT--SPQG 58 +++++ + +PP+T + AG G W+ T+ + RPP QGP T S G Sbjct: 446 VIEIQVSEQEPPSTDVPPSPEAGGTTGP------WTSTTSEVPRPPEPSQGPSTTSSGGG 499 Query: 59 SPPRSPWGDCAEP 71 + P P G P Sbjct: 500 TGPHPPSGTTLRP 512 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.323 0.140 0.476 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,517,093 Number of Sequences: 37866 Number of extensions: 336989 Number of successful extensions: 1178 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 49 Number of HSP's that attempted gapping in prelim test: 1140 Number of HSP's gapped (non-prelim): 80 length of query: 129 length of database: 18,247,518 effective HSP length: 90 effective length of query: 39 effective length of database: 14,839,578 effective search space: 578743542 effective search space used: 578743542 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.