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Search of human proteins with 30425464
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30425464 transmembrane protein 105 [Homo sapiens]
(129 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30425464 transmembrane protein 105 [Homo sapiens] 275 7e-75
gi|239740845 PREDICTED: hypothetical protein XP_002344070 [Homo ... 35 0.021
gi|239740737 PREDICTED: hypothetical protein [Homo sapiens] 35 0.021
gi|239740652 PREDICTED: hypothetical protein [Homo sapiens] 35 0.021
gi|11138123 cholinergic receptor, nicotinic, alpha 10 [Homo sapi... 33 0.081
gi|4505349 necdin [Homo sapiens] 31 0.24
gi|239754312 PREDICTED: hypothetical protein XP_002345955 [Homo ... 31 0.31
gi|239748874 PREDICTED: hypothetical protein XP_002346837 [Homo ... 31 0.31
gi|239742903 PREDICTED: hypothetical protein XP_002342672 [Homo ... 31 0.31
gi|169204521 PREDICTED: hypothetical protein [Homo sapiens] 30 0.40
gi|169205149 PREDICTED: hypothetical protein [Homo sapiens] 30 0.40
gi|169204400 PREDICTED: hypothetical protein [Homo sapiens] 30 0.40
gi|239756926 PREDICTED: similar to TBC1 domain family, member 3 ... 30 0.53
gi|89886237 cyclin I family, member 2 [Homo sapiens] 30 0.53
gi|18079216 CASK interacting protein 1 [Homo sapiens] 29 0.90
gi|239755452 PREDICTED: hypothetical protein [Homo sapiens] 29 0.90
gi|239749933 PREDICTED: hypothetical protein XP_002347217 [Homo ... 29 0.90
gi|239744256 PREDICTED: hypothetical protein XP_002343085 [Homo ... 29 0.90
gi|95147356 mitogen-activated protein kinase 15 [Homo sapiens] 28 1.5
gi|98961138 ZXD family zinc finger C isoform 2 [Homo sapiens] 28 1.5
gi|98961133 ZXD family zinc finger C isoform 1 [Homo sapiens] 28 1.5
gi|58218966 hypothetical protein LOC339201 [Homo sapiens] 28 1.5
gi|149944548 neurobeachin-like 2 [Homo sapiens] 28 2.0
gi|171460922 transmembrane protein 132D [Homo sapiens] 28 2.6
gi|20162568 melanoma antigen family C, 3 isoform 1 [Homo sapiens] 28 2.6
gi|29294655 melanoma antigen family C, 3 isoform 2 [Homo sapiens] 28 2.6
gi|87116681 lysophosphatidylcholine acyltransferase 4 [Homo sapi... 27 3.4
gi|55956910 meningioma 1 [Homo sapiens] 27 3.4
gi|134031945 SCO-spondin [Homo sapiens] 27 3.4
gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens] 27 3.4
>gi|30425464 transmembrane protein 105 [Homo sapiens]
Length = 129
Score = 275 bits (703), Expect = 7e-75
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MLLKVRRASLKPPATPHQGAFRAGNVIGQLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSP 60
MLLKVRRASLKPPATPHQGAFRAGNVIGQLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSP
Sbjct: 1 MLLKVRRASLKPPATPHQGAFRAGNVIGQLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSP 60
Query: 61 PRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAGGLHLVPSSLSLAACGVVRMKGLW 120
PRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAGGLHLVPSSLSLAACGVVRMKGLW
Sbjct: 61 PRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAGGLHLVPSSLSLAACGVVRMKGLW 120
Query: 121 GRGAGIRGR 129
GRGAGIRGR
Sbjct: 121 GRGAGIRGR 129
>gi|239740845 PREDICTED: hypothetical protein XP_002344070 [Homo
sapiens]
Length = 222
Score = 34.7 bits (78), Expect = 0.021
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 19 GAFRAGNVIGQLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSPPRSPWG 66
GA+R G V+G LL W +T +R P +GP + R PWG
Sbjct: 169 GAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFG-RDPGKRRPWG 215
>gi|239740737 PREDICTED: hypothetical protein [Homo sapiens]
Length = 147
Score = 34.7 bits (78), Expect = 0.021
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 19 GAFRAGNVIGQLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSPPRSPWG 66
GA+R G V+G LL W +T +R P +GP + R PWG
Sbjct: 94 GAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFG-RDPGKRRPWG 140
>gi|239740652 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 34.7 bits (78), Expect = 0.021
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 19 GAFRAGNVIGQLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSPPRSPWG 66
GA+R G V+G LL W +T +R P +GP + R PWG
Sbjct: 143 GAYRGGGVLGTKPRLLGWGRYTLRVRGPGATEGPAFG-RDPGKRRPWG 189
>gi|11138123 cholinergic receptor, nicotinic, alpha 10 [Homo
sapiens]
Length = 450
Score = 32.7 bits (73), Expect = 0.081
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 44 RPPTLLQGPRTSPQGSPPRSPWGDCAEPSCLCEMK 78
RPP L P++ G+ P P G C EP CLC +
Sbjct: 361 RPPELSPSPQSPEGGAGP--PAGPCHEPRCLCRQE 393
>gi|4505349 necdin [Homo sapiens]
Length = 321
Score = 31.2 bits (69), Expect = 0.24
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 51 GPRTSPQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSG 93
GP +PQ +PP D +P L + R H+ P+ Q G
Sbjct: 47 GPTAAPQAAPPPQAPNDEGDPKALQQAAEEGRAHQAPSAAQPG 89
>gi|239754312 PREDICTED: hypothetical protein XP_002345955 [Homo
sapiens]
Length = 127
Score = 30.8 bits (68), Expect = 0.31
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 16/69 (23%)
Query: 43 LRPPTLLQGPRT-----SPQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAG 97
L PP L+G T PQ SPP + E + +R R GPA +S F G
Sbjct: 10 LNPPHTLEGATTLALTRGPQASPPG-----------ILEPREKRGRDHGPARPRSAFFPG 58
Query: 98 GLHLVPSSL 106
P SL
Sbjct: 59 ERRCPPGSL 67
>gi|239748874 PREDICTED: hypothetical protein XP_002346837 [Homo
sapiens]
Length = 127
Score = 30.8 bits (68), Expect = 0.31
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 16/69 (23%)
Query: 43 LRPPTLLQGPRT-----SPQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAG 97
L PP L+G T PQ SPP + E + +R R GPA +S F G
Sbjct: 10 LNPPHTLEGATTLALTRGPQASPPG-----------ILEPREKRGRDHGPARPRSAFFPG 58
Query: 98 GLHLVPSSL 106
P SL
Sbjct: 59 ERRCPPGSL 67
>gi|239742903 PREDICTED: hypothetical protein XP_002342672 [Homo
sapiens]
Length = 127
Score = 30.8 bits (68), Expect = 0.31
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 16/69 (23%)
Query: 43 LRPPTLLQGPRT-----SPQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAG 97
L PP L+G T PQ SPP + E + +R R GPA +S F G
Sbjct: 10 LNPPHTLEGATTLALTRGPQASPPG-----------ILEPREKRGRDHGPARPRSAFFPG 58
Query: 98 GLHLVPSSL 106
P SL
Sbjct: 59 ERRCPPGSL 67
>gi|169204521 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 30.4 bits (67), Expect = 0.40
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 56 PQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAGGLHLVPSSLSLAACGVVR 115
P+G P P C E + RRR HEG A G+ A P++ + A G R
Sbjct: 311 PRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRA-GRAR 369
Query: 116 MKGLWGRGAGIR 127
+G R G R
Sbjct: 370 PRGRRHREHGTR 381
>gi|169205149 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 30.4 bits (67), Expect = 0.40
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 56 PQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAGGLHLVPSSLSLAACGVVR 115
P+G P P C E + RRR HEG A G+ A P++ + A G R
Sbjct: 311 PRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRA-GRAR 369
Query: 116 MKGLWGRGAGIR 127
+G R G R
Sbjct: 370 PRGRRHREHGTR 381
>gi|169204400 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 30.4 bits (67), Expect = 0.40
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 56 PQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAGGLHLVPSSLSLAACGVVR 115
P+G P P C E + RRR HEG A G+ A P++ + A G R
Sbjct: 311 PRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRA-GRAR 369
Query: 116 MKGLWGRGAGIR 127
+G R G R
Sbjct: 370 PRGRRHREHGTR 381
>gi|239756926 PREDICTED: similar to TBC1 domain family, member 3
[Homo sapiens]
Length = 424
Score = 30.0 bits (66), Expect = 0.53
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
Query: 6 RRASLKPPATPHQGAFRAGNVIGQLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSPPRSPW 65
++ L PPA P QG+ + V A TL +G R +P G P R PW
Sbjct: 228 KQGDLPPPAKPEQGSSASRPV-------------PASRGGKTLCKGDRQAPPGPPARFPW 274
>gi|89886237 cyclin I family, member 2 [Homo sapiens]
Length = 369
Score = 30.0 bits (66), Expect = 0.53
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 50 QGPRTSPQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAW 89
Q PR +PQ PR+ GD E LC +++ + R E W
Sbjct: 99 QAPRPAPQSRKPRNLEGDLDERRLLCHLQLAQDR-EARLW 137
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 29.3 bits (64), Expect = 0.90
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 49 LQGPRTSPQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAGGLHLVPSSLSL 108
L GP T + R P G+ A+P E R+R GP+ G++G L V +S +L
Sbjct: 1066 LSGPVTGLLATARRGP-GESADPGPFVEDGTGRQRPRGPSKGEAGVEGPPLAKVEASATL 1124
>gi|239755452 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 29.3 bits (64), Expect = 0.90
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 12/49 (24%)
Query: 21 FRAGNVIG----QLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSPPRSPW 65
F G V G Q +YLL W PP LL+G + Q P R+PW
Sbjct: 127 FPKGQVWGCWCPQHVYLLLW--------PPGLLRGEGVAIQPPPYRAPW 167
>gi|239749933 PREDICTED: hypothetical protein XP_002347217 [Homo
sapiens]
Length = 171
Score = 29.3 bits (64), Expect = 0.90
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 12/49 (24%)
Query: 21 FRAGNVIG----QLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSPPRSPW 65
F G V G Q +YLL W PP LL+G + Q P R+PW
Sbjct: 127 FPKGQVWGCWCPQHVYLLLW--------PPGLLRGEGVAIQPPPYRAPW 167
>gi|239744256 PREDICTED: hypothetical protein XP_002343085 [Homo
sapiens]
Length = 171
Score = 29.3 bits (64), Expect = 0.90
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 12/49 (24%)
Query: 21 FRAGNVIG----QLIYLLTWSLFTAWLRPPTLLQGPRTSPQGSPPRSPW 65
F G V G Q +YLL W PP LL+G + Q P R+PW
Sbjct: 127 FPKGQVWGCWCPQHVYLLLW--------PPGLLRGEGVAIQPPPYRAPW 167
>gi|95147356 mitogen-activated protein kinase 15 [Homo sapiens]
Length = 544
Score = 28.5 bits (62), Expect = 1.5
Identities = 28/100 (28%), Positives = 35/100 (35%), Gaps = 19/100 (19%)
Query: 47 TLLQGPRTSPQGSP----------------PRSPWGDCAEPSCLCEMKIRRRRHEGPAWG 90
T +QGPR PQ SP PR + + L + E P
Sbjct: 381 TPVQGPRPRPQSSPGHDPAEHESPRAAKNVPRQNSAPLLQTALLGNGERPPGAKEAPPLT 440
Query: 91 QSGFLAGGLHLVPSSLSLAACGVVR---MKGLWGRGAGIR 127
S G PS S AA V ++G W RG G+R
Sbjct: 441 LSLVKPSGRGAAPSLTSQAAAQVANQALIRGDWNRGGGVR 480
>gi|98961138 ZXD family zinc finger C isoform 2 [Homo sapiens]
Length = 710
Score = 28.5 bits (62), Expect = 1.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 52 PRTSPQGSPPRSPWGDCAEPSC 73
PR +PQ S P +P C EP C
Sbjct: 161 PRRAPQASGPSTPGYRCPEPQC 182
>gi|98961133 ZXD family zinc finger C isoform 1 [Homo sapiens]
Length = 858
Score = 28.5 bits (62), Expect = 1.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 52 PRTSPQGSPPRSPWGDCAEPSC 73
PR +PQ S P +P C EP C
Sbjct: 161 PRRAPQASGPSTPGYRCPEPQC 182
>gi|58218966 hypothetical protein LOC339201 [Homo sapiens]
Length = 193
Score = 28.5 bits (62), Expect = 1.5
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 27/81 (33%)
Query: 49 LQGPRTSPQGS--PPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAGGLHLVPSSL 106
+ GP ++PQG+ PRSP +RR+ + P+WG G P++
Sbjct: 1 MSGPPSAPQGALAAPRSP-------------AVRRKGLQAPSWGSPG--------RPAAH 39
Query: 107 SLAACGVVRMKGLWGRGAGIR 127
S ACG WG G R
Sbjct: 40 SPWACGPPH----WGPQRGPR 56
>gi|149944548 neurobeachin-like 2 [Homo sapiens]
Length = 2754
Score = 28.1 bits (61), Expect = 2.0
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 40 TAWLRPPTLLQGPRTSPQGSPPRSPWGDCAEPS 72
TA PP+ + P TSP+ +PP+ P AEPS
Sbjct: 1298 TAGSPPPSSPESP-TSPKPAPPKPPTESPAEPS 1329
>gi|171460922 transmembrane protein 132D [Homo sapiens]
Length = 1099
Score = 27.7 bits (60), Expect = 2.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 11/42 (26%)
Query: 38 LFTAWLRPPTLLQGPRTS---PQGSP--------PRSPWGDC 68
L ++W PPT++ G R S P+G+P P GDC
Sbjct: 198 LLSSWFSPPTVVAGRRKSVDQPEGTPVELYYTVHPGGERGDC 239
>gi|20162568 melanoma antigen family C, 3 isoform 1 [Homo sapiens]
Length = 643
Score = 27.7 bits (60), Expect = 2.6
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 52 PRTSPQG---SPPRSPWGDCAEP 71
P+ SPQG SPP+SP C+ P
Sbjct: 400 PKISPQGPPQSPPQSPLDSCSSP 422
>gi|29294655 melanoma antigen family C, 3 isoform 2 [Homo sapiens]
Length = 346
Score = 27.7 bits (60), Expect = 2.6
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 52 PRTSPQG---SPPRSPWGDCAEP 71
P+ SPQG SPP+SP C+ P
Sbjct: 102 PKISPQGPPQSPPQSPLDSCSSP 124
>gi|87116681 lysophosphatidylcholine acyltransferase 4 [Homo
sapiens]
Length = 524
Score = 27.3 bits (59), Expect = 3.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 38 LFTAWLRPPTLLQGPRTSPQGSPPRSP 64
LF+ +LRPP +G +P S P +P
Sbjct: 482 LFSTYLRPPHTSRGTSQTPNASSPGNP 508
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 27.3 bits (59), Expect = 3.4
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 45 PPTLLQGPRTSPQGSPPRSPWGDCAEPSCLCEMKIRRRRHEGPAWGQSGFLAGGLHLVPS 104
PP Q P+ PQ PP P + SC + R +G A SG L G ++PS
Sbjct: 346 PPPQQQPPQQPPQQQPPPPPGLLVRQNSCPPALP---RPQQGEAGTPSGGLQDGGPMLPS 402
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 27.3 bits (59), Expect = 3.4
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 63 SPWGDCAEPSCLCEMKIRRRRHEGPAWGQS-GFLAGGLH 100
SPW C+EP C M +R+ H G++ L GGLH
Sbjct: 1757 SPWSVCSEP-CRGTMTRQRQCHSPQNGGRTCAALPGGLH 1794
>gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens]
Length = 845
Score = 27.3 bits (59), Expect = 3.4
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 2 LLKVRRASLKPPATPHQGAFRAGNVIGQLIYLLTWSLFTAWL-RPPTLLQGPRT--SPQG 58
+++++ + +PP+T + AG G W+ T+ + RPP QGP T S G
Sbjct: 446 VIEIQVSEQEPPSTDVPPSPEAGGTTGP------WTSTTSEVPRPPEPSQGPSTTSSGGG 499
Query: 59 SPPRSPWGDCAEP 71
+ P P G P
Sbjct: 500 TGPHPPSGTTLRP 512
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.140 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,517,093
Number of Sequences: 37866
Number of extensions: 336989
Number of successful extensions: 1178
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1140
Number of HSP's gapped (non-prelim): 80
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.