Guide to the Human Genome
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Name: LOC100294209 Sequence: fasta or formatted (147aa) NCBI GI: 239740737
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1          9           1
 C cysteine            4.1          6           1
 D aspartate           2.7          4           1
 E glutamate           6.8         10           2
 F phenylalanine       4.8          7           1
 G glycine            18.4         27           3
 H histidine           2.0          3           1
 I isoleucine          0.7          1           1
 K lysine              6.1          9           2
 L leucine             6.8         10           2
 M methionine          1.4          2           1
 N asparagine          1.4          2           1
 P proline             8.2         12           1
 Q glutamine           2.7          4           1
 R arginine            7.5         11           2
 S serine              4.1          6           1
 T threonine           6.1          9           2
 V valine              4.1          6           1
 W tryptophan          4.8          7           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294257          0.931   PREDICTED: hypothetical protein XP_002344070 
LOC100294096          0.921   PREDICTED: hypothetical protein 
TMEM105               0.033   transmembrane protein 105 
LOC100288473          0.026   PREDICTED: hypothetical protein XP_002343336 
KBTBD11               0.026   kelch repeat and BTB (POZ) domain containing 11 [Homo...
ZNF469                0.026   zinc finger protein 469 
KLF1                  0.023   Kruppel-like factor 1 (erythroid) 
NTN3                  0.023   netrin 3 
SSPO                  0.016   SCO-spondin 
LOC100292623          0.013   PREDICTED: hypothetical protein 
LOC100290254          0.013   PREDICTED: hypothetical protein XP_002347960 
BIN1                  0.013   bridging integrator 1 isoform 7 
BIN1                  0.013   bridging integrator 1 isoform 3 
TK2                   0.013   thymidine kinase 2, mitochondrial 
VWCE                  0.013   von Willebrand factor C and EGF domains 
LOC100293408          0.013   PREDICTED: hypothetical protein 
LOC100289362          0.013   PREDICTED: hypothetical protein 
LOC100289782          0.013   PREDICTED: hypothetical protein XP_002347588 
LOC100289362          0.013   PREDICTED: hypothetical protein XP_002343719 
SPSB2                 0.010   splA/ryanodine receptor domain and SOCS box contain...
LOC100130897          0.010   PREDICTED: hypothetical protein 
LOC100287163          0.010   PREDICTED: hypothetical protein XP_002343923 
LOC100130897          0.010   PREDICTED: hypothetical protein 
ZNF717                0.010   zinc finger protein 717 
APOB48R               0.010   apolipoprotein B48 receptor 
LOC100132369          0.010   PREDICTED: hypothetical protein 
LOC100132369          0.010   PREDICTED: hypothetical protein 
LOC100132369          0.010   PREDICTED: hypothetical protein 
PRKAR2B               0.010   cAMP-dependent protein kinase, regulatory subunit be...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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