Guide to the Human Genome
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Name: LOC100288718 Sequence: fasta or formatted (171aa) NCBI GI: 239744256
Description:

PREDICTED: hypothetical protein XP_002343085

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         16           3
 C cysteine            4.7          8           2
 D aspartate           1.2          2           1
 E glutamate           5.3          9           1
 F phenylalanine       1.8          3           1
 G glycine            11.7         20           1
 H histidine           2.9          5           2
 I isoleucine          1.8          3           1
 K lysine              1.2          2           1
 L leucine            13.5         23           3
 M methionine          1.2          2           1
 N asparagine          0.0          0           0
 P proline            11.1         19           3
 Q glutamine           7.6         13           1
 R arginine            3.5          6           1
 S serine              5.8         10           2
 T threonine           3.5          6           1
 V valine              7.6         13           2
 W tryptophan          4.1          7           1
 Y tyrosine            2.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343085 
LOC100290226          1.000   PREDICTED: hypothetical protein XP_002347217 
LOC100293927          0.986   PREDICTED: hypothetical protein 
SOX15                 0.023   SRY-box 15 
LOC100292631          0.020   PREDICTED: hypothetical protein 
LOC100290201          0.020   PREDICTED: hypothetical protein XP_002347929 
CDCA4                 0.017   cell division cycle associated 4 
CDCA4                 0.017   cell division cycle associated 4 
HERC1                 0.014   guanine nucleotide exchange factor p532 
NUDT19                0.014   nudix (nucleoside diphosphate linked moiety X)-type...
ANKRD11               0.014   ankyrin repeat domain 11 
PRTN3                 0.012   myeloblastin 
TMEM105               0.012   transmembrane protein 105 
RABEP2                0.012   rabaptin, RAB GTPase binding effector protein 2 [Ho...
LOC100293652          0.009   PREDICTED: hypothetical protein 
LOC100291016          0.009   PREDICTED: hypothetical protein XP_002347804 
LOC100287809          0.009   PREDICTED: hypothetical protein XP_002343597 
DIRC2                 0.009   disrupted in renal carcinoma 2 
GGA2                  0.009   ADP-ribosylation factor binding protein 2 
ROR2                  0.009   receptor tyrosine kinase-like orphan receptor 2 prec...
SEC16A                0.009   SEC16 homolog A 
LOC100287971          0.009   PREDICTED: hypothetical protein XP_002343195 
HPX-2                 0.009   PREDICTED: similar to double homeobox, 4 
MLL2                  0.009   myeloid/lymphoid or mixed-lineage leukemia 2 
CMPK2                 0.009   UMP-CMP kinase 2 
C4orf50               0.009   hypothetical protein LOC389197 
PIGQ                  0.006   phosphatidylinositol glycan anchor biosynthesis, cla...
F12                   0.006   coagulation factor XII precursor 
LOC100292387          0.006   PREDICTED: similar to hemicentin 2 
FGD1                  0.006   faciogenital dysplasia protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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