Guide to the Human Genome
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Name: LOC100293927 Sequence: fasta or formatted (171aa) NCBI GI: 239755452
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         16           3
 C cysteine            4.1          7           1
 D aspartate           1.2          2           1
 E glutamate           5.3          9           1
 F phenylalanine       1.8          3           1
 G glycine            11.7         20           1
 H histidine           2.9          5           2
 I isoleucine          1.8          3           1
 K lysine              1.2          2           1
 L leucine            13.5         23           3
 M methionine          1.2          2           1
 N asparagine          0.0          0           0
 P proline            11.1         19           3
 Q glutamine           7.6         13           1
 R arginine            4.1          7           1
 S serine              5.8         10           2
 T threonine           3.5          6           1
 V valine              7.6         13           2
 W tryptophan          4.1          7           1
 Y tyrosine            2.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290226          0.988   PREDICTED: hypothetical protein XP_002347217 
LOC100288718          0.988   PREDICTED: hypothetical protein XP_002343085 
CDCA4                 0.017   cell division cycle associated 4 
CDCA4                 0.017   cell division cycle associated 4 
HERC1                 0.015   guanine nucleotide exchange factor p532 
NUDT19                0.015   nudix (nucleoside diphosphate linked moiety X)-type...
ANKRD11               0.015   ankyrin repeat domain 11 
RABEP2                0.012   rabaptin, RAB GTPase binding effector protein 2 [Ho...
TMEM105               0.012   transmembrane protein 105 
FGD1                  0.012   faciogenital dysplasia protein 
SOX15                 0.012   SRY-box 15 
SEC16A                0.009   SEC16 homolog A 
LOC100293652          0.009   PREDICTED: hypothetical protein 
LOC100291016          0.009   PREDICTED: hypothetical protein XP_002347804 
LOC100287809          0.009   PREDICTED: hypothetical protein XP_002343597 
C4orf50               0.009   hypothetical protein LOC389197 
DIRC2                 0.009   disrupted in renal carcinoma 2 
ROR2                  0.009   receptor tyrosine kinase-like orphan receptor 2 prec...
LOC100287971          0.009   PREDICTED: hypothetical protein XP_002343195 
MLL2                  0.009   myeloid/lymphoid or mixed-lineage leukemia 2 
CMPK2                 0.009   UMP-CMP kinase 2 
HPX-2                 0.006   PREDICTED: similar to double homeobox, 4 
LOC100129129          0.006   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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