Guide to the Human Genome
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Name: TMEM132D Sequence: fasta or formatted (1099aa) NCBI GI: 171460922
Description:

transmembrane protein 132D

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         54           2
 C cysteine            1.4         15           1
 D aspartate           6.3         69           2
 E glutamate           7.0         77           4
 F phenylalanine       3.2         35           2
 G glycine             6.8         75           2
 H histidine           2.1         23           2
 I isoleucine          5.6         61           3
 K lysine              5.6         61           3
 L leucine             9.3        102           2
 M methionine          2.3         25           1
 N asparagine          3.5         38           2
 P proline             5.1         56           2
 Q glutamine           4.7         52           1
 R arginine            5.4         59           2
 S serine              9.3        102           3
 T threonine           5.6         62           3
 V valine              8.5         93           3
 W tryptophan          1.4         15           1
 Y tyrosine            2.3         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 132D 
TMEM132C              0.532   transmembrane protein 132C 
TMEM132B              0.479   transmembrane protein 132B 
TMEM132E              0.252   transmembrane protein 132E 
TMEM132A              0.224   transmembrane protein 132A isoform b 
TMEM132A              0.223   transmembrane protein 132A isoform a 
LOC121296             0.061   PREDICTED: similar to TMEM132B protein 
LOC121296             0.061   PREDICTED: similar to TMEM132B protein 
LOC121296             0.061   PREDICTED: hypothetical protein 
PLCH1                 0.004   phospholipase C eta 1 isoform a 
PLCH1                 0.004   phospholipase C eta 1 isoform b 
HOMER1                0.004   homer 1 
CLSTN1                0.003   calsyntenin 1 isoform 1 
CLSTN1                0.003   calsyntenin 1 isoform 2 
YIF1B                 0.003   Yip1 interacting factor homolog B isoform 2 
YIF1B                 0.003   Yip1 interacting factor homolog B isoform 6 
YIF1B                 0.003   Yip1 interacting factor homolog B isoform 2 
YIF1B                 0.003   Yip1 interacting factor homolog B isoform 3 
YIF1B                 0.003   Yip1 interacting factor homolog B isoform 4 
YIF1B                 0.003   Yip1 interacting factor homolog B isoform 5 
ATRX                  0.003   transcriptional regulator ATRX isoform 2 
ATRX                  0.003   transcriptional regulator ATRX isoform 1 
PCNT                  0.002   pericentrin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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