Guide to the Human Genome
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Name: LOC100294096 Sequence: fasta or formatted (196aa) NCBI GI: 239740652
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         12           1
 C cysteine            3.6          7           1
 D aspartate           2.0          4           1
 E glutamate           5.6         11           2
 F phenylalanine       4.1          8           1
 G glycine            16.3         32           3
 H histidine           1.0          2           1
 I isoleucine          1.0          2           1
 K lysine              6.1         12           2
 L leucine             9.2         18           2
 M methionine          0.5          1           1
 N asparagine          3.6          7           1
 P proline             7.1         14           1
 Q glutamine           3.1          6           1
 R arginine            7.7         15           2
 S serine              6.6         13           2
 T threonine           7.1         14           2
 V valine              4.1          8           1
 W tryptophan          3.6          7           1
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294257          0.711   PREDICTED: hypothetical protein XP_002344070 
LOC100294209          0.706   PREDICTED: hypothetical protein 
TMEM105               0.025   transmembrane protein 105 
LOC100288473          0.020   PREDICTED: hypothetical protein XP_002343336 
KBTBD11               0.020   kelch repeat and BTB (POZ) domain containing 11 [Homo...
ZNF469                0.020   zinc finger protein 469 
KLF1                  0.018   Kruppel-like factor 1 (erythroid) 
NTN3                  0.018   netrin 3 
LTBP3                 0.015   latent transforming growth factor beta binding prot...
LTBP3                 0.015   latent transforming growth factor beta binding prote...
SSPO                  0.013   SCO-spondin 
LOC100292623          0.010   PREDICTED: hypothetical protein 
LOC100290254          0.010   PREDICTED: hypothetical protein XP_002347960 
BIN1                  0.010   bridging integrator 1 isoform 7 
BIN1                  0.010   bridging integrator 1 isoform 3 
TK2                   0.010   thymidine kinase 2, mitochondrial 
VWCE                  0.010   von Willebrand factor C and EGF domains 
LOC100293408          0.010   PREDICTED: hypothetical protein 
LOC100289362          0.010   PREDICTED: hypothetical protein 
LOC100289782          0.010   PREDICTED: hypothetical protein XP_002347588 
LOC100289362          0.010   PREDICTED: hypothetical protein XP_002343719 
SPSB2                 0.008   splA/ryanodine receptor domain and SOCS box contain...
LOC100130897          0.008   PREDICTED: hypothetical protein 
LOC100287163          0.008   PREDICTED: hypothetical protein XP_002343923 
LOC100130897          0.008   PREDICTED: hypothetical protein 
ZNF717                0.008   zinc finger protein 717 
APOB48R               0.008   apolipoprotein B48 receptor 
LOC100132369          0.008   PREDICTED: hypothetical protein 
LOC100132369          0.008   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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