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Search of human proteins with 30179907
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30179907 paired immunoglobulin-like type 2 receptor alpha
isoform 3 precursor [Homo sapiens]
(175 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30179907 paired immunoglobulin-like type 2 receptor alpha iso... 363 e-101
gi|30179909 paired immunoglobulin-like type 2 receptor alpha iso... 320 4e-88
gi|30179905 paired immunoglobulin-like type 2 receptor alpha iso... 318 2e-87
gi|30179915 paired immunoglobulin-like type 2 receptor beta isof... 286 6e-78
gi|30179911 paired immunoglobulin-like type 2 receptor beta isof... 286 6e-78
gi|30179913 paired immunoglobulin-like type 2 receptor beta isof... 40 8e-04
gi|4502659 sialic acid binding Ig-like lectin 5 [Homo sapiens] 38 0.005
gi|148762980 sialic acid binding Ig-like lectin 14 [Homo sapiens] 38 0.005
gi|47106069 sialic acid binding Ig-like lectin 15 [Homo sapiens] 35 0.025
gi|9507239 immunoglobulin iota chain precursor [Homo sapiens] 33 0.13
gi|205830473 sialic acid binding Ig-like lectin 11 isoform 2 [Ho... 32 0.22
gi|205830470 sialic acid binding Ig-like lectin 11 isoform 1 [Ho... 32 0.22
gi|205277425 immunoglobulin superfamily, member 9 isoform a [Hom... 32 0.28
gi|205277423 immunoglobulin superfamily, member 9 isoform b [Hom... 32 0.28
gi|4502685 CD79A antigen isoform 1 precursor [Homo sapiens] 30 0.82
gi|27886665 potassium voltage-gated channel, subfamily H, member... 30 0.82
gi|27886653 potassium voltage-gated channel, subfamily H, member... 30 0.82
gi|193083163 roundabout, axon guidance receptor, homolog 2 isofo... 30 1.1
gi|61888896 roundabout, axon guidance receptor, homolog 2 isofor... 30 1.1
gi|28872784 CDK5 regulatory subunit associated protein 1 isoform... 30 1.4
gi|28872782 CDK5 regulatory subunit associated protein 1 isoform... 30 1.4
gi|27597078 TYRO3 protein tyrosine kinase [Homo sapiens] 29 1.8
gi|239758119 PREDICTED: similar to hCG2042717 [Homo sapiens] 29 2.4
gi|239757668 PREDICTED: similar to Ig lambda chain [Homo sapiens] 29 2.4
gi|21361571 CD48 molecule [Homo sapiens] 28 3.1
gi|238624147 neuroplastin isoform c precursor [Homo sapiens] 28 3.1
gi|6912646 neuroplastin isoform b precursor [Homo sapiens] 28 3.1
gi|239750235 PREDICTED: hypothetical protein [Homo sapiens] 28 4.1
gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo ... 28 4.1
gi|19923572 SLAM family member 7 [Homo sapiens] 28 4.1
>gi|30179907 paired immunoglobulin-like type 2 receptor alpha
isoform 3 precursor [Homo sapiens]
Length = 175
Score = 363 bits (933), Expect = e-101
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
Sbjct: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
Query: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGNPSKTQRSHMRISGMKDKIQIPS 175
SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGNPSKTQRSHMRISGMKDKIQIPS
Sbjct: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGNPSKTQRSHMRISGMKDKIQIPS 175
>gi|30179909 paired immunoglobulin-like type 2 receptor alpha
isoform 1 precursor [Homo sapiens]
Length = 303
Score = 320 bits (820), Expect = 4e-88
Identities = 154/159 (96%), Positives = 155/159 (97%)
Query: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
Sbjct: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
Query: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGNPSKTQR 159
SVYFCRVELDTRSSGRQQWQSIEGTKLSITQ + TQR
Sbjct: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQAVTTTTQR 159
>gi|30179905 paired immunoglobulin-like type 2 receptor alpha
isoform 2 precursor [Homo sapiens]
Length = 230
Score = 318 bits (815), Expect = 2e-87
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
Sbjct: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
Query: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQG 152
SVYFCRVELDTRSSGRQQWQSIEGTKLSITQG
Sbjct: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQG 152
>gi|30179915 paired immunoglobulin-like type 2 receptor beta isoform
a precursor [Homo sapiens]
Length = 227
Score = 286 bits (732), Expect = 6e-78
Identities = 138/157 (87%), Positives = 145/157 (92%)
Query: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLL LL PPAFLQP GSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
LA P+VRISWRRGHFH QSFYSTRPPSIHKDYVNRLFLNWTEGQ+SGFLRISNL+K+DQ
Sbjct: 61 LAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ 120
Query: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGNPSKT 157
SVYFCRVELDTR SGRQQ QSI+GTKL+ITQ + T
Sbjct: 121 SVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTT 157
>gi|30179911 paired immunoglobulin-like type 2 receptor beta isoform
a precursor [Homo sapiens]
Length = 227
Score = 286 bits (732), Expect = 6e-78
Identities = 138/157 (87%), Positives = 145/157 (92%)
Query: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLL LL PPAFLQP GSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
LA P+VRISWRRGHFH QSFYSTRPPSIHKDYVNRLFLNWTEGQ+SGFLRISNL+K+DQ
Sbjct: 61 LAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ 120
Query: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGNPSKT 157
SVYFCRVELDTR SGRQQ QSI+GTKL+ITQ + T
Sbjct: 121 SVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTT 157
>gi|30179913 paired immunoglobulin-like type 2 receptor beta
isoform b [Homo sapiens]
Length = 149
Score = 40.4 bits (93), Expect = 8e-04
Identities = 19/21 (90%), Positives = 19/21 (90%)
Query: 1 MGRPLLLPLLPLLLPPAFLQP 21
MGRPLLLPLL LL PPAFLQP
Sbjct: 1 MGRPLLLPLLLLLQPPAFLQP 21
>gi|4502659 sialic acid binding Ig-like lectin 5 [Homo sapiens]
Length = 551
Score = 37.7 bits (86), Expect = 0.005
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 9 LLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPW-ELATAPDV 67
+LPLLL P L GS P +Y + K ++ G V +P SF YPW ++P +
Sbjct: 1 MLPLLLLP--LLWGGSLQEKP--VYELQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPL 56
Query: 68 RISWRRG---HFHRQSFYSTRPP-SIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVY 123
+ W R ++ + + P + + R L +K+ L I + + +D Y
Sbjct: 57 YVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSY 116
Query: 124 FCRVE--LDTRSSGRQQWQSIEGTKL 147
F RVE D + S +Q ++E T L
Sbjct: 117 FFRVERGRDVKYSYQQNKLNLEVTAL 142
>gi|148762980 sialic acid binding Ig-like lectin 14 [Homo sapiens]
Length = 396
Score = 37.7 bits (86), Expect = 0.005
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 9 LLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPW-ELATAPDV 67
+LPLLL P L GS P +Y + K ++ G V +P SF YPW ++P +
Sbjct: 1 MLPLLLLP--LLWGGSLQEKP--VYELQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPL 56
Query: 68 RISWRRG---HFHRQSFYSTRPP-SIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVY 123
+ W R ++ + + P + + R L +K+ L I + + +D Y
Sbjct: 57 YVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSY 116
Query: 124 FCRVE--LDTRSSGRQQWQSIEGTKL 147
F RVE D + S +Q ++E T L
Sbjct: 117 FFRVERGRDVKYSYQQNKLNLEVTAL 142
>gi|47106069 sialic acid binding Ig-like lectin 15 [Homo sapiens]
Length = 328
Score = 35.4 bits (80), Expect = 0.025
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 18/135 (13%)
Query: 27 SGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWELATAPDVRISWRRGHFH--------- 77
S P+ + + P +SA G + +P +F +P P I WR G +
Sbjct: 38 SSPAQRWSMQVPPEVSAEAGDAAVLPCTFTHPHRHYDGPLTAI-WRAGEPYAGPQVFRCA 96
Query: 78 --RQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVYFCRVELDTRSSG 135
R S S+H + RL N S LR+ L D YFCRVE
Sbjct: 97 AARGSELCQTALSLHGRF--RLLGNPRRNDLS--LRVERLALADDRRYFCRVEF--AGDV 150
Query: 136 RQQWQSIEGTKLSIT 150
+++S G +L +T
Sbjct: 151 HDRYESRHGVRLHVT 165
>gi|9507239 immunoglobulin iota chain precursor [Homo sapiens]
Length = 145
Score = 33.1 bits (74), Expect = 0.13
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 25 TGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWELATAPDVRISWRRGHFHR--QSFY 82
TG GP + + QP +S+++G ++ + + ++ R GH R ++
Sbjct: 15 TGCGPQPV--LHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYF 72
Query: 83 STRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVYFCRVELDTRSSGRQQ 138
S S R + + G+L IS LQ +D+++Y+C + RSS +++
Sbjct: 73 SQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYC--AMGARSSEKEE 126
>gi|205830473 sialic acid binding Ig-like lectin 11 isoform 2 [Homo
sapiens]
Length = 602
Score = 32.3 bits (72), Expect = 0.22
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 9 LLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYP---WELATAP 65
LLPLLLP + +GS PSY V + + G V + + YP W+ +TA
Sbjct: 15 LLPLLLP---VLGAGSLNKDPSYSLQVQ--RQVPVPEGLCVIVSCNLSYPRDGWDESTA- 68
Query: 66 DVRISWRRGHFHRQS----FYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQS 121
W +G ++ + + + +R L G+ S L I + Q++D++
Sbjct: 69 -AYGYWFKGRTSPKTGAPVATNNQSREVEMSTRDRFQLTGDPGKGSCSLVIRDAQREDEA 127
Query: 122 VYFCRVELDTR 132
YF RVE +R
Sbjct: 128 WYFFRVERGSR 138
>gi|205830470 sialic acid binding Ig-like lectin 11 isoform 1 [Homo
sapiens]
Length = 698
Score = 32.3 bits (72), Expect = 0.22
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 9 LLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYP---WELATAP 65
LLPLLLP + +GS PSY V + + G V + + YP W+ +TA
Sbjct: 15 LLPLLLP---VLGAGSLNKDPSYSLQVQ--RQVPVPEGLCVIVSCNLSYPRDGWDESTA- 68
Query: 66 DVRISWRRGHFHRQS----FYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQS 121
W +G ++ + + + +R L G+ S L I + Q++D++
Sbjct: 69 -AYGYWFKGRTSPKTGAPVATNNQSREVEMSTRDRFQLTGDPGKGSCSLVIRDAQREDEA 127
Query: 122 VYFCRVELDTR 132
YF RVE +R
Sbjct: 128 WYFFRVERGSR 138
>gi|205277425 immunoglobulin superfamily, member 9 isoform a [Homo
sapiens]
Length = 1179
Score = 32.0 bits (71), Expect = 0.28
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 69 ISWRRGHFHRQSF--YSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVYFCR 126
I W R F F + P I DYV R+ L QK L+I L+ +DQ Y CR
Sbjct: 55 IEWLRFGFLLPIFIQFGLYSPRIDPDYVGRVRL-----QKGASLQIEGLRVEDQGWYECR 109
Query: 127 V 127
V
Sbjct: 110 V 110
>gi|205277423 immunoglobulin superfamily, member 9 isoform b [Homo
sapiens]
Length = 1163
Score = 32.0 bits (71), Expect = 0.28
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 69 ISWRRGHFHRQSF--YSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVYFCR 126
I W R F F + P I DYV R+ L QK L+I L+ +DQ Y CR
Sbjct: 55 IEWLRFGFLLPIFIQFGLYSPRIDPDYVGRVRL-----QKGASLQIEGLRVEDQGWYECR 109
Query: 127 V 127
V
Sbjct: 110 V 110
>gi|4502685 CD79A antigen isoform 1 precursor [Homo sapiens]
Length = 226
Score = 30.4 bits (67), Expect = 0.82
Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 31/156 (19%)
Query: 2 GRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWEL 61
G P +L LP + FL + G G L+ P L S+G F P
Sbjct: 3 GGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAH----FQCPHN- 57
Query: 62 ATAPDVRISWRR---GHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQ 118
++ + ++W R G++ T PP FL E +G L I N+ K
Sbjct: 58 -SSNNANVTWWRVLHGNY-------TWPPE---------FLGPGE-DPNGTLIIQNVNKS 99
Query: 119 DQSVYFCRVELDTRSSGRQQWQSIEGTKLSITQGNP 154
+Y CRV+ G + +Q GT L + Q P
Sbjct: 100 HGGIYVCRVQ-----EGNESYQQSCGTYLRVRQPPP 130
>gi|27886665 potassium voltage-gated channel, subfamily H, member 7
isoform 2 [Homo sapiens]
Length = 732
Score = 30.4 bits (67), Expect = 0.82
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 83 STRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVYFCRVELDTRSSGRQQWQSI 142
S+ PSI YV L+ ++ GF +S ++ C + + G + SI
Sbjct: 597 SSSGPSIKDKYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLI-----GSLMYASI 651
Query: 143 EGTKLSITQGNPSKTQRSHMRISGMKDKI---QIPS 175
G +I Q S T R HM++ +K+ I QIP+
Sbjct: 652 FGNVSAIIQRLYSGTARYHMQMLRVKEFIRFHQIPN 687
>gi|27886653 potassium voltage-gated channel, subfamily H, member 7
isoform 1 [Homo sapiens]
Length = 1196
Score = 30.4 bits (67), Expect = 0.82
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 83 STRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVYFCRVELDTRSSGRQQWQSI 142
S+ PSI YV L+ ++ GF +S ++ C + + G + SI
Sbjct: 604 SSSGPSIKDKYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLI-----GSLMYASI 658
Query: 143 EGTKLSITQGNPSKTQRSHMRISGMKDKI---QIPS 175
G +I Q S T R HM++ +K+ I QIP+
Sbjct: 659 FGNVSAIIQRLYSGTARYHMQMLRVKEFIRFHQIPN 694
>gi|193083163 roundabout, axon guidance receptor, homolog 2 isoform
ROBO2a [Homo sapiens]
Length = 1394
Score = 30.0 bits (66), Expect = 1.1
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 105 QKSGFLRISNLQKQDQSVYFCRVELDTRSSGRQQWQSI-----------EGTKLSITQGN 153
Q+ G L+I NL+ D Y C + T SSG W ++ + LS G
Sbjct: 484 QEQGTLQIKNLRISDTGTYTC---VATSSSGETSWSAVLDVTESGATISKNYDLSDLPGP 540
Query: 154 PSKTQ 158
PSK Q
Sbjct: 541 PSKPQ 545
>gi|61888896 roundabout, axon guidance receptor, homolog 2 isoform
ROBO2b [Homo sapiens]
Length = 1378
Score = 30.0 bits (66), Expect = 1.1
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 14/65 (21%)
Query: 105 QKSGFLRISNLQKQDQSVYFCRVELDTRSSGRQQWQSI-----------EGTKLSITQGN 153
Q+ G L+I NL+ D Y C + T SSG W ++ + LS G
Sbjct: 468 QEQGTLQIKNLRISDTGTYTC---VATSSSGETSWSAVLDVTESGATISKNYDLSDLPGP 524
Query: 154 PSKTQ 158
PSK Q
Sbjct: 525 PSKPQ 529
>gi|28872784 CDK5 regulatory subunit associated protein 1 isoform b
[Homo sapiens]
Length = 497
Score = 29.6 bits (65), Expect = 1.4
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 94 VNRLFLNWTEGQKSGFLRISNLQKQD 119
VN + W+ QKSG+LR SNLQ+ D
Sbjct: 23 VNDTEIAWSILQKSGYLRTSNLQEAD 48
>gi|28872782 CDK5 regulatory subunit associated protein 1 isoform a
[Homo sapiens]
Length = 587
Score = 29.6 bits (65), Expect = 1.4
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 94 VNRLFLNWTEGQKSGFLRISNLQKQD 119
VN + W+ QKSG+LR SNLQ+ D
Sbjct: 113 VNDTEIAWSILQKSGYLRTSNLQEAD 138
>gi|27597078 TYRO3 protein tyrosine kinase [Homo sapiens]
Length = 890
Score = 29.3 bits (64), Expect = 1.8
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 27/151 (17%)
Query: 1 MGRPLLLPLLPLLLPP------AFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFS 54
MGRP L PL PL PP A L S + L + P L+ S G V++ S
Sbjct: 7 MGRPGLPPL-PLPPPPRLGLLLAALASLLLPESAAAGLKLMGAPVKLTVSQGQPVKLNCS 65
Query: 55 FYYPWELATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISN 114
E PD++ W + Q+ +++L++ +E GFL + +
Sbjct: 66 V----EGMEEPDIQ--WVKDGAVVQN-------------LDQLYIPVSEQHWIGFLSLKS 106
Query: 115 LQKQDQSVYFCRVELDTRSSGRQQ-WQSIEG 144
+++ D Y+C+VE + Q W ++EG
Sbjct: 107 VERSDAGRYWCQVEDGGETEISQPVWLTVEG 137
>gi|239758119 PREDICTED: similar to hCG2042717 [Homo sapiens]
Length = 196
Score = 28.9 bits (63), Expect = 2.4
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 53 FSFYYPWELATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRI 112
FS YY + AP + W + S Y+ S+ R ++ + S +L++
Sbjct: 58 FSDYYMSWIRQAPGKGLEWV-SYISSSSSYTNYADSVK----GRFTISRDNAKNSLYLQM 112
Query: 113 SNLQKQDQSVYFC 125
++L+ +D +VY+C
Sbjct: 113 NSLRAEDTAVYYC 125
>gi|239757668 PREDICTED: similar to Ig lambda chain [Homo sapiens]
Length = 288
Score = 28.9 bits (63), Expect = 2.4
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 11 PLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIP---------FSFYYPWEL 61
P L PP P+GS S Y +TQP +S S G + I ++ +YP +
Sbjct: 182 PTLWPPLLSSPAGSVAS-----YELTQPPAVSVSPGQTARISCSGDVLRDNYADWYPQKP 236
Query: 62 ATAP 65
AP
Sbjct: 237 GQAP 240
>gi|21361571 CD48 molecule [Homo sapiens]
Length = 243
Score = 28.5 bits (62), Expect = 3.1
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 106 KSGFLRISNLQKQDQSVYFCRVELDTRSSGRQQWQ 140
+SG L IS +QK+D S Y RV ++ Q+W+
Sbjct: 90 QSGALYISKVQKEDNSTYIMRVL--KKTGNEQEWK 122
>gi|238624147 neuroplastin isoform c precursor [Homo sapiens]
Length = 394
Score = 28.5 bits (62), Expect = 3.1
Identities = 36/150 (24%), Positives = 52/150 (34%), Gaps = 23/150 (15%)
Query: 10 LPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFS--------FYYPWEL 61
LP L + L SGS GP +A G V+ P S F ++
Sbjct: 6 LPSALALSLLLVSGSLLPGPG-----------AAQNAGFVKSPMSETKLTGDAFELYCDV 54
Query: 62 ATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKS-GFLRISNLQKQDQ 120
+P I W +R + K R+ +N G LRI+ L +D
Sbjct: 55 VGSPTPEIQWWYAEVNRAESFRQLWDGARK---RRVTVNTAYGSNGVSVLRITRLTLEDS 111
Query: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSIT 150
Y CR D + + +Q SI + T
Sbjct: 112 GTYECRASNDPKRNDLRQNPSITWIRAQAT 141
>gi|6912646 neuroplastin isoform b precursor [Homo sapiens]
Length = 398
Score = 28.5 bits (62), Expect = 3.1
Identities = 36/150 (24%), Positives = 52/150 (34%), Gaps = 23/150 (15%)
Query: 10 LPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFS--------FYYPWEL 61
LP L + L SGS GP +A G V+ P S F ++
Sbjct: 6 LPSALALSLLLVSGSLLPGPG-----------AAQNAGFVKSPMSETKLTGDAFELYCDV 54
Query: 62 ATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKS-GFLRISNLQKQDQ 120
+P I W +R + K R+ +N G LRI+ L +D
Sbjct: 55 VGSPTPEIQWWYAEVNRAESFRQLWDGARK---RRVTVNTAYGSNGVSVLRITRLTLEDS 111
Query: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSIT 150
Y CR D + + +Q SI + T
Sbjct: 112 GTYECRASNDPKRNDLRQNPSITWIRAQAT 141
>gi|239750235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 28.1 bits (61), Expect = 4.1
Identities = 22/46 (47%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 5 LLLPL---LPLLLP---PAFLQPSG--STGSGPSYLYGVTQPKHLS 42
LLLPL LPL LP P FL PS S+ S PSY + P S
Sbjct: 152 LLLPLFLLLPLFLPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSS 197
>gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo
sapiens]
Length = 257
Score = 28.1 bits (61), Expect = 4.1
Identities = 22/46 (47%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 5 LLLPL---LPLLLP---PAFLQPSG--STGSGPSYLYGVTQPKHLS 42
LLLPL LPL LP P FL PS S+ S PSY + P S
Sbjct: 152 LLLPLFLLLPLFLPLFIPLFLLPSSSPSSSSSPSYSSPSSSPSSSS 197
>gi|19923572 SLAM family member 7 [Homo sapiens]
Length = 335
Score = 28.1 bits (61), Expect = 4.1
Identities = 35/129 (27%), Positives = 49/129 (37%), Gaps = 33/129 (25%)
Query: 2 GRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYP--- 58
G P L L+ +L Q +GS SGP K L S+GG+V P
Sbjct: 3 GSPTCLTLIYILW-----QLTGSAASGPV--------KELVGSVGGAVTFPLKSKVKQVD 49
Query: 59 ---WELATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNL 115
W T P V I G I NR +++ +G S L++S L
Sbjct: 50 SIVWTFNTTPLVTIQPEGGTI------------IVTQNRNRERVDFPDGGYS--LKLSKL 95
Query: 116 QKQDQSVYF 124
+K D +Y+
Sbjct: 96 KKNDSGIYY 104
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,607,122
Number of Sequences: 37866
Number of extensions: 336838
Number of successful extensions: 1217
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1181
Number of HSP's gapped (non-prelim): 79
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.