Guide to the Human Genome
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Name: LOC100293211 Sequence: fasta or formatted (196aa) NCBI GI: 239758119
Description:

PREDICTED: similar to hCG2042717

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         14           2
 C cysteine            3.1          6           1
 D aspartate           3.6          7           1
 E glutamate           2.6          5           1
 F phenylalanine       5.1         10           1
 G glycine            10.2         20           3
 H histidine           1.0          2           1
 I isoleucine          3.1          6           2
 K lysine              3.1          6           1
 L leucine             8.7         17           2
 M methionine          1.5          3           1
 N asparagine          3.1          6           1
 P proline             5.1         10           2
 Q glutamine           5.6         11           1
 R arginine            6.1         12           1
 S serine             12.2         24           5
 T threonine           4.1          8           1
 V valine              8.2         16           2
 W tryptophan          2.0          4           1
 Y tyrosine            4.6          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2042717 
LOC100293270          0.810   PREDICTED: similar to hCG2042717 
LOC100290320          0.810   PREDICTED: hypothetical protein XP_002347525 
LOC100291190          0.691   PREDICTED: hypothetical protein XP_002347529 
LOC100290036          0.541   PREDICTED: hypothetical protein XP_002347522 
LOC646057             0.538   PREDICTED: similar to hCG2003024 
LOC646057             0.536   PREDICTED: similar to hCG2003024 
LOC652494             0.530   PREDICTED: similar to hCG2042717 
LOC100289290          0.522   PREDICTED: hypothetical protein XP_002343511 
LOC100290115          0.509   PREDICTED: hypothetical protein XP_002347523 
LOC401847             0.509   PREDICTED: similar to hCG1793095 
LOC100290738          0.496   PREDICTED: hypothetical protein XP_002348171 
LOC100287372          0.496   PREDICTED: hypothetical protein XP_002343513 
LOC100132941          0.459   PREDICTED: similar to Ig heavy chain 
LOC100292999          0.451   PREDICTED: hypothetical protein 
LOC100291056          0.449   PREDICTED: hypothetical protein XP_002347527 
LOC100132941          0.443   PREDICTED: similar to Ig heavy chain 
LOC646057             0.427   PREDICTED: similar to hCG2003024 
LOC100290146          0.372   PREDICTED: hypothetical protein XP_002347524 
LOC100134397          0.325   PREDICTED: similar to hCG1812074 
LOC642131             0.325   PREDICTED: similar to hCG1812074 
LOC642131             0.322   PREDICTED: similar to hCG1812074 
LOC642131             0.319   PREDICTED: similar to hCG1812074 
LOC100292483          0.285   PREDICTED: similar to pre-B lymphocyte gene 2 [Homo...
LOC100290448          0.285   PREDICTED: hypothetical protein XP_002347494 
LOC100133862          0.280   PREDICTED: similar to hCG1773549 
LOC100130811          0.274   PREDICTED: similar to hCG2038921 
LOC100130811          0.274   PREDICTED: similar to hCG2038921 
LOC100292858          0.261   PREDICTED: similar to hCG2029977 
LOC100292611          0.253   PREDICTED: similar to pre-B lymphocyte gene 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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