Guide to the Human Genome
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Name: LOC100293440 Sequence: fasta or formatted (288aa) NCBI GI: 239757668
Description:

PREDICTED: similar to Ig lambda chain

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         23           2
 C cysteine            2.1          6           1
 D aspartate           4.2         12           1
 E glutamate           2.1          6           1
 F phenylalanine       2.8          8           2
 G glycine             9.4         27           2
 H histidine           1.4          4           1
 I isoleucine          3.1          9           1
 K lysine              2.8          8           1
 L leucine             8.7         25           2
 M methionine          1.0          3           1
 N asparagine          2.1          6           1
 P proline             8.0         23           2
 Q glutamine           4.2         12           2
 R arginine            3.5         10           1
 S serine             15.6         45           3
 T threonine           9.0         26           2
 V valine              5.6         16           1
 W tryptophan          2.1          6           1
 Y tyrosine            4.5         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Ig lambda chain 
LOC100293142          0.363   PREDICTED: similar to hCG2040019 
LOC100290481          0.232   PREDICTED: hypothetical protein XP_002348153 
LOC100293277          0.193   PREDICTED: similar to hCG2040021 
LOC651536             0.161   PREDICTED: similar to hCG96018 
LOC651536             0.161   PREDICTED: similar to hCG96018 
LOC100291682          0.137   PREDICTED: similar to hCG1686089 
LOC100290992          0.137   PREDICTED: hypothetical protein XP_002347049 
LOC650405             0.124   PREDICTED: similar to hCG2042707 
LOC100291786          0.121   PREDICTED: similar to hCG2043206 
LOC440871             0.119   PREDICTED: similar to hCG2043206 
LOC652493             0.117   PREDICTED: similar to pre-B lymphocyte gene 1 [Homo...
LOC100291027          0.115   PREDICTED: hypothetical protein XP_002348323 
LOC100130100          0.113   PREDICTED: similar to hCG26659 
LOC100291464          0.113   PREDICTED: hypothetical protein XP_002346449 
LOC100130100          0.113   PREDICTED: similar to hCG26659 
LOC642424             0.110   PREDICTED: similar to hCG1742442 
LOC642424             0.110   PREDICTED: similar to hCG1742442 
LOC642424             0.110   PREDICTED: similar to hCG1742442 
LOC642838             0.105   PREDICTED: similar to hCG1742442 
LOC100290557          0.103   PREDICTED: hypothetical protein XP_002348155 
LOC100287723          0.103   PREDICTED: hypothetical protein XP_002342271 
LOC100288993          0.101   PREDICTED: hypothetical protein XP_002342967 
LOC100132426          0.101   PREDICTED: similar to hCG1742442 
LOC439957             0.099   PREDICTED: similar to hCG1742442 
LOC439957             0.099   PREDICTED: similar to hCG1742442 
VPREB1                0.099   immunoglobulin iota chain precursor 
LOC100291731          0.098   PREDICTED: similar to hCG36857 
LOC100290819          0.098   PREDICTED: hypothetical protein XP_002348319 
VPREB3                0.083   pre-B lymphocyte 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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