Guide to the Human Genome
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Name: CDK5RAP1 Sequence: fasta or formatted (587aa) NCBI GI: 28872782
Description:

CDK5 regulatory subunit associated protein 1 isoform a

Referenced in:

Cyclins and Related Functions

Other entries for this name:
alt prot [497aa] CDK5 regulatory subunit associated protein 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         38           2
 C cysteine            2.6         15           1
 D aspartate           4.8         28           2
 E glutamate           7.3         43           2
 F phenylalanine       2.9         17           1
 G glycine             5.3         31           2
 H histidine           2.2         13           2
 I isoleucine          4.1         24           1
 K lysine              4.1         24           2
 L leucine            11.1         65           2
 M methionine          2.7         16           2
 N asparagine          3.4         20           2
 P proline             4.6         27           3
 Q glutamine           5.1         30           2
 R arginine            8.7         51           2
 S serine              9.2         54           2
 T threonine           5.1         30           2
 V valine              7.2         42           1
 W tryptophan          0.7          4           1
 Y tyrosine            2.6         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CDK5 regulatory subunit associated protein 1 isoform... 
CDK5RAP1              0.839   CDK5 regulatory subunit associated protein 1 isoform...
CDKAL1                0.092   CDK5 regulatory subunit associated protein 1-like 1 ...
LAMB4                 0.007   laminin, beta 4 
PNPLA2                0.007   patatin-like phospholipase domain containing 2 [Homo...
PILRA                 0.004   paired immunoglobulin-like type 2 receptor alpha iso...
PILRA                 0.004   paired immunoglobulin-like type 2 receptor alpha iso...
PILRA                 0.004   paired immunoglobulin-like type 2 receptor alpha iso...
SYTL3                 0.004   synaptotagmin-like 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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