Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 30179905
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30179905 paired immunoglobulin-like type 2 receptor alpha
isoform 2 precursor [Homo sapiens]
(230 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30179905 paired immunoglobulin-like type 2 receptor alpha iso... 475 e-134
gi|30179907 paired immunoglobulin-like type 2 receptor alpha iso... 318 2e-87
gi|30179909 paired immunoglobulin-like type 2 receptor alpha iso... 317 7e-87
gi|30179915 paired immunoglobulin-like type 2 receptor beta isof... 288 4e-78
gi|30179911 paired immunoglobulin-like type 2 receptor beta isof... 288 4e-78
gi|30179913 paired immunoglobulin-like type 2 receptor beta isof... 40 0.001
gi|4502659 sialic acid binding Ig-like lectin 5 [Homo sapiens] 38 0.008
gi|148762980 sialic acid binding Ig-like lectin 14 [Homo sapiens] 38 0.008
gi|47106069 sialic acid binding Ig-like lectin 15 [Homo sapiens] 35 0.041
gi|9507239 immunoglobulin iota chain precursor [Homo sapiens] 33 0.20
gi|205830473 sialic acid binding Ig-like lectin 11 isoform 2 [Ho... 32 0.35
gi|205830470 sialic acid binding Ig-like lectin 11 isoform 1 [Ho... 32 0.35
gi|205277425 immunoglobulin superfamily, member 9 isoform a [Hom... 32 0.46
gi|205277423 immunoglobulin superfamily, member 9 isoform b [Hom... 32 0.46
gi|32469509 zinc finger and BTB domain containing 12 [Homo sapiens] 32 0.46
gi|27597078 TYRO3 protein tyrosine kinase [Homo sapiens] 31 0.78
gi|21071060 SWI/SNF-related matrix-associated actin-dependent re... 31 1.0
gi|187761314 SWI/SNF-related matrix-associated actin-dependent r... 31 1.0
gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens] 30 1.7
gi|239753786 PREDICTED: hypothetical protein LOC100129786 [Homo ... 30 2.3
gi|169167301 PREDICTED: hypothetical protein LOC100129786 [Homo ... 30 2.3
gi|169166477 PREDICTED: hypothetical protein LOC100129786 [Homo ... 30 2.3
gi|4502685 CD79A antigen isoform 1 precursor [Homo sapiens] 30 2.3
gi|116805342 human immunodeficiency virus type I enhancer bindin... 30 2.3
gi|28872784 CDK5 regulatory subunit associated protein 1 isoform... 30 2.3
gi|28872782 CDK5 regulatory subunit associated protein 1 isoform... 30 2.3
gi|239753568 PREDICTED: hypothetical protein [Homo sapiens] 29 3.0
gi|158508572 nuclear receptor subfamily 3, group C, member 2 [Ho... 29 3.9
gi|239758119 PREDICTED: similar to hCG2042717 [Homo sapiens] 29 3.9
gi|193083163 roundabout, axon guidance receptor, homolog 2 isofo... 29 3.9
>gi|30179905 paired immunoglobulin-like type 2 receptor alpha
isoform 2 precursor [Homo sapiens]
Length = 230
Score = 475 bits (1222), Expect = e-134
Identities = 230/230 (100%), Positives = 230/230 (100%)
Query: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
Sbjct: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
Query: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGQQRTKATTPAREPFQNTEEPYENIRNEG 180
SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGQQRTKATTPAREPFQNTEEPYENIRNEG
Sbjct: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGQQRTKATTPAREPFQNTEEPYENIRNEG 180
Query: 181 QNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSVLKA 230
QNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSVLKA
Sbjct: 181 QNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKSPQNETLYSVLKA 230
>gi|30179907 paired immunoglobulin-like type 2 receptor alpha
isoform 3 precursor [Homo sapiens]
Length = 175
Score = 318 bits (815), Expect = 2e-87
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
Sbjct: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
Query: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQG 152
SVYFCRVELDTRSSGRQQWQSIEGTKLSITQG
Sbjct: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQG 152
>gi|30179909 paired immunoglobulin-like type 2 receptor alpha
isoform 1 precursor [Homo sapiens]
Length = 303
Score = 317 bits (811), Expect = 7e-87
Identities = 155/169 (91%), Positives = 156/169 (92%), Gaps = 5/169 (2%)
Query: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ
Sbjct: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
Query: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGQQRTKATTPAREPFQNT 169
SVYFCRVELDTRSSGRQQWQSIEGTKLSITQ TT + P T
Sbjct: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQA-----VTTTTQRPSSMT 164
Score = 164 bits (414), Expect = 8e-41
Identities = 79/80 (98%), Positives = 80/80 (100%)
Query: 151 QGQQRTKATTPAREPFQNTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAP 210
+GQQRTKATTPAREPFQNTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAP
Sbjct: 224 KGQQRTKATTPAREPFQNTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAP 283
Query: 211 PSHRPLKSPQNETLYSVLKA 230
PSHRPLKSPQNETLYSVLKA
Sbjct: 284 PSHRPLKSPQNETLYSVLKA 303
>gi|30179915 paired immunoglobulin-like type 2 receptor beta isoform
a precursor [Homo sapiens]
Length = 227
Score = 288 bits (736), Expect = 4e-78
Identities = 139/162 (85%), Positives = 146/162 (90%)
Query: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLL LL PPAFLQP GSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
LA P+VRISWRRGHFH QSFYSTRPPSIHKDYVNRLFLNWTEGQ+SGFLRISNL+K+DQ
Sbjct: 61 LAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ 120
Query: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGQQRTKATTPA 162
SVYFCRVELDTR SGRQQ QSI+GTKL+ITQ T P+
Sbjct: 121 SVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPS 162
>gi|30179911 paired immunoglobulin-like type 2 receptor beta isoform
a precursor [Homo sapiens]
Length = 227
Score = 288 bits (736), Expect = 4e-78
Identities = 139/162 (85%), Positives = 146/162 (90%)
Query: 1 MGRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
MGRPLLLPLL LL PPAFLQP GSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE
Sbjct: 1 MGRPLLLPLLLLLQPPAFLQPGGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWE 60
Query: 61 LATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQ 120
LA P+VRISWRRGHFH QSFYSTRPPSIHKDYVNRLFLNWTEGQ+SGFLRISNL+K+DQ
Sbjct: 61 LAIVPNVRISWRRGHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRKEDQ 120
Query: 121 SVYFCRVELDTRSSGRQQWQSIEGTKLSITQGQQRTKATTPA 162
SVYFCRVELDTR SGRQQ QSI+GTKL+ITQ T P+
Sbjct: 121 SVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPS 162
>gi|30179913 paired immunoglobulin-like type 2 receptor beta
isoform b [Homo sapiens]
Length = 149
Score = 40.4 bits (93), Expect = 0.001
Identities = 19/21 (90%), Positives = 19/21 (90%)
Query: 1 MGRPLLLPLLPLLLPPAFLQP 21
MGRPLLLPLL LL PPAFLQP
Sbjct: 1 MGRPLLLPLLLLLQPPAFLQP 21
>gi|4502659 sialic acid binding Ig-like lectin 5 [Homo sapiens]
Length = 551
Score = 37.7 bits (86), Expect = 0.008
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 9 LLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPW-ELATAPDV 67
+LPLLL P L GS P +Y + K ++ G V +P SF YPW ++P +
Sbjct: 1 MLPLLLLP--LLWGGSLQEKP--VYELQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPL 56
Query: 68 RISWRRG---HFHRQSFYSTRPP-SIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVY 123
+ W R ++ + + P + + R L +K+ L I + + +D Y
Sbjct: 57 YVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSY 116
Query: 124 FCRVE--LDTRSSGRQQWQSIEGTKL 147
F RVE D + S +Q ++E T L
Sbjct: 117 FFRVERGRDVKYSYQQNKLNLEVTAL 142
>gi|148762980 sialic acid binding Ig-like lectin 14 [Homo sapiens]
Length = 396
Score = 37.7 bits (86), Expect = 0.008
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 9 LLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPW-ELATAPDV 67
+LPLLL P L GS P +Y + K ++ G V +P SF YPW ++P +
Sbjct: 1 MLPLLLLP--LLWGGSLQEKP--VYELQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPL 56
Query: 68 RISWRRG---HFHRQSFYSTRPP-SIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVY 123
+ W R ++ + + P + + R L +K+ L I + + +D Y
Sbjct: 57 YVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSY 116
Query: 124 FCRVE--LDTRSSGRQQWQSIEGTKL 147
F RVE D + S +Q ++E T L
Sbjct: 117 FFRVERGRDVKYSYQQNKLNLEVTAL 142
>gi|47106069 sialic acid binding Ig-like lectin 15 [Homo sapiens]
Length = 328
Score = 35.4 bits (80), Expect = 0.041
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 18/135 (13%)
Query: 27 SGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWELATAPDVRISWRRGHFH--------- 77
S P+ + + P +SA G + +P +F +P P I WR G +
Sbjct: 38 SSPAQRWSMQVPPEVSAEAGDAAVLPCTFTHPHRHYDGPLTAI-WRAGEPYAGPQVFRCA 96
Query: 78 --RQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVYFCRVELDTRSSG 135
R S S+H + RL N S LR+ L D YFCRVE
Sbjct: 97 AARGSELCQTALSLHGRF--RLLGNPRRNDLS--LRVERLALADDRRYFCRVEF--AGDV 150
Query: 136 RQQWQSIEGTKLSIT 150
+++S G +L +T
Sbjct: 151 HDRYESRHGVRLHVT 165
>gi|9507239 immunoglobulin iota chain precursor [Homo sapiens]
Length = 145
Score = 33.1 bits (74), Expect = 0.20
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 25 TGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWELATAPDVRISWRRGHFHR--QSFY 82
TG GP + + QP +S+++G ++ + + ++ R GH R ++
Sbjct: 15 TGCGPQPV--LHQPPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYF 72
Query: 83 STRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVYFCRVELDTRSSGRQQ 138
S S R + + G+L IS LQ +D+++Y+C + RSS +++
Sbjct: 73 SQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQPEDEAMYYC--AMGARSSEKEE 126
>gi|205830473 sialic acid binding Ig-like lectin 11 isoform 2 [Homo
sapiens]
Length = 602
Score = 32.3 bits (72), Expect = 0.35
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 9 LLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYP---WELATAP 65
LLPLLLP + +GS PSY V + + G V + + YP W+ +TA
Sbjct: 15 LLPLLLP---VLGAGSLNKDPSYSLQVQ--RQVPVPEGLCVIVSCNLSYPRDGWDESTA- 68
Query: 66 DVRISWRRGHFHRQS----FYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQS 121
W +G ++ + + + +R L G+ S L I + Q++D++
Sbjct: 69 -AYGYWFKGRTSPKTGAPVATNNQSREVEMSTRDRFQLTGDPGKGSCSLVIRDAQREDEA 127
Query: 122 VYFCRVELDTR 132
YF RVE +R
Sbjct: 128 WYFFRVERGSR 138
>gi|205830470 sialic acid binding Ig-like lectin 11 isoform 1 [Homo
sapiens]
Length = 698
Score = 32.3 bits (72), Expect = 0.35
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 9 LLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYP---WELATAP 65
LLPLLLP + +GS PSY V + + G V + + YP W+ +TA
Sbjct: 15 LLPLLLP---VLGAGSLNKDPSYSLQVQ--RQVPVPEGLCVIVSCNLSYPRDGWDESTA- 68
Query: 66 DVRISWRRGHFHRQS----FYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQS 121
W +G ++ + + + +R L G+ S L I + Q++D++
Sbjct: 69 -AYGYWFKGRTSPKTGAPVATNNQSREVEMSTRDRFQLTGDPGKGSCSLVIRDAQREDEA 127
Query: 122 VYFCRVELDTR 132
YF RVE +R
Sbjct: 128 WYFFRVERGSR 138
>gi|205277425 immunoglobulin superfamily, member 9 isoform a [Homo
sapiens]
Length = 1179
Score = 32.0 bits (71), Expect = 0.46
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 69 ISWRRGHFHRQSF--YSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVYFCR 126
I W R F F + P I DYV R+ L QK L+I L+ +DQ Y CR
Sbjct: 55 IEWLRFGFLLPIFIQFGLYSPRIDPDYVGRVRL-----QKGASLQIEGLRVEDQGWYECR 109
Query: 127 V 127
V
Sbjct: 110 V 110
>gi|205277423 immunoglobulin superfamily, member 9 isoform b [Homo
sapiens]
Length = 1163
Score = 32.0 bits (71), Expect = 0.46
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 69 ISWRRGHFHRQSF--YSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQDQSVYFCR 126
I W R F F + P I DYV R+ L QK L+I L+ +DQ Y CR
Sbjct: 55 IEWLRFGFLLPIFIQFGLYSPRIDPDYVGRVRL-----QKGASLQIEGLRVEDQGWYECR 109
Query: 127 V 127
V
Sbjct: 110 V 110
>gi|32469509 zinc finger and BTB domain containing 12 [Homo sapiens]
Length = 459
Score = 32.0 bits (71), Expect = 0.46
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 170 EEPYENIRNE-GQNTDPKLNPKDDGIVYASLALS-SSTSPRAPPSHRPLKSPQ 220
E E RN Q +PK+ K+DG+ ASL S S+T PP+ P +P+
Sbjct: 113 EHVVEKCRNALSQFIEPKIGLKEDGVSEASLVSSISATKSLLPPARTPKPAPK 165
>gi|27597078 TYRO3 protein tyrosine kinase [Homo sapiens]
Length = 890
Score = 31.2 bits (69), Expect = 0.78
Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 30/174 (17%)
Query: 1 MGRPLLLPLLPLLLPP------AFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFS 54
MGRP L PL PL PP A L S + L + P L+ S G V++ S
Sbjct: 7 MGRPGLPPL-PLPPPPRLGLLLAALASLLLPESAAAGLKLMGAPVKLTVSQGQPVKLNCS 65
Query: 55 FYYPWELATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISN 114
E PD++ W + Q+ +++L++ +E GFL + +
Sbjct: 66 V----EGMEEPDIQ--WVKDGAVVQN-------------LDQLYIPVSEQHWIGFLSLKS 106
Query: 115 LQKQDQSVYFCRVELDTRSSGRQQ-WQSIEGTKLSITQGQQRTKATTPAREPFQ 167
+++ D Y+C+VE + Q W ++EG + + P PFQ
Sbjct: 107 VERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKD---LAVPPNAPFQ 157
>gi|21071060 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a-like 1 [Homo sapiens]
Length = 954
Score = 30.8 bits (68), Expect = 1.0
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 136 RQQWQSIEGTKLSITQGQQRTKATTPAREPFQNTEEPYENIRNEGQNTDPKLNPKDDGIV 195
RQ+ + KL Q Q+ + T+ A PFQ + P +N E P G++
Sbjct: 17 RQKALARRAEKLLAEQHQRTSSGTSIAGNPFQAKQGPSQNFPRE------SCKPVSHGVI 70
Query: 196 YASLALSSSTSPRAPP 211
+ LSSS++ P
Sbjct: 71 FKQQNLSSSSNADQRP 86
>gi|187761314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a-like 1 [Homo sapiens]
Length = 954
Score = 30.8 bits (68), Expect = 1.0
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 136 RQQWQSIEGTKLSITQGQQRTKATTPAREPFQNTEEPYENIRNEGQNTDPKLNPKDDGIV 195
RQ+ + KL Q Q+ + T+ A PFQ + P +N E P G++
Sbjct: 17 RQKALARRAEKLLAEQHQRTSSGTSIAGNPFQAKQGPSQNFPRE------SCKPVSHGVI 70
Query: 196 YASLALSSSTSPRAPP 211
+ LSSS++ P
Sbjct: 71 FKQQNLSSSSNADQRP 86
>gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]
Length = 1388
Score = 30.0 bits (66), Expect = 1.7
Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 7/105 (6%)
Query: 110 LRISNLQKQDQSVYFCRVELDTRSSGRQQWQSIE----GTKLSITQGQQRTKATTPAREP 165
+R N++ Q++ + FCR +TR+ + ++ T S G T+P
Sbjct: 14 MREENVEPQNKQMAFCRPMTETRADVQILHSHVQLPIVSTSASDPGGTSTQLMTSPV--- 70
Query: 166 FQNTEEPYENIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAP 210
F P + N G + P + D G + L +S + +P
Sbjct: 71 FDTMSAPLMGVPNSGALSPPLMPASDSGALSPLLMPASDSGALSP 115
>gi|239753786 PREDICTED: hypothetical protein LOC100129786 [Homo
sapiens]
Length = 210
Score = 29.6 bits (65), Expect = 2.3
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 134 SGRQQWQSIEGTKLSITQGQQRTKATTPAREPFQNTEEPYE-NIRNEGQNTDPKLNPKDD 192
S R+ W+ + + QR + +P P Q+T E E ++R Q+ P+ NP+
Sbjct: 81 STRESWKPTHAEQARAPETDQRGASESPGNRPTQSTRESQETDLRRARQS--PR-NPRRA 137
Query: 193 GIVYASLALSSSTSPRAPPSHRPLKSPQNE 222
+ S+ PR P + ++P+ +
Sbjct: 138 RGSPGNRPAQSTREPRKPTNAEHARAPETD 167
>gi|169167301 PREDICTED: hypothetical protein LOC100129786 [Homo
sapiens]
Length = 210
Score = 29.6 bits (65), Expect = 2.3
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 134 SGRQQWQSIEGTKLSITQGQQRTKATTPAREPFQNTEEPYE-NIRNEGQNTDPKLNPKDD 192
S R+ W+ + + QR + +P P Q+T E E ++R Q+ P+ NP+
Sbjct: 81 STRESWKPTHAEQARAPETDQRGASESPGNRPTQSTRESQETDLRRARQS--PR-NPRRA 137
Query: 193 GIVYASLALSSSTSPRAPPSHRPLKSPQNE 222
+ S+ PR P + ++P+ +
Sbjct: 138 RGSPGNRPAQSTREPRKPTNAEHARAPETD 167
>gi|169166477 PREDICTED: hypothetical protein LOC100129786 [Homo
sapiens]
Length = 210
Score = 29.6 bits (65), Expect = 2.3
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 134 SGRQQWQSIEGTKLSITQGQQRTKATTPAREPFQNTEEPYE-NIRNEGQNTDPKLNPKDD 192
S R+ W+ + + QR + +P P Q+T E E ++R Q+ P+ NP+
Sbjct: 81 STRESWKPTHAEQARAPETDQRGASESPGNRPTQSTRESQETDLRRARQS--PR-NPRRA 137
Query: 193 GIVYASLALSSSTSPRAPPSHRPLKSPQNE 222
+ S+ PR P + ++P+ +
Sbjct: 138 RGSPGNRPAQSTREPRKPTNAEHARAPETD 167
>gi|4502685 CD79A antigen isoform 1 precursor [Homo sapiens]
Length = 226
Score = 29.6 bits (65), Expect = 2.3
Identities = 41/157 (26%), Positives = 60/157 (38%), Gaps = 31/157 (19%)
Query: 2 GRPLLLPLLPLLLPPAFLQPSGSTGSGPSYLYGVTQPKHLSASMGGSVEIPFSFYYPWEL 61
G P +L LP + FL + G G L+ P L S+G F P
Sbjct: 3 GGPGVLQALPATIFLLFLLSAVYLGPGCQALWMHKVPASLMVSLGEDAH----FQCPHN- 57
Query: 62 ATAPDVRISWRR---GHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRISNLQKQ 118
++ + ++W R G++ T PP FL E +G L I N+ K
Sbjct: 58 -SSNNANVTWWRVLHGNY-------TWPPE---------FLGPGE-DPNGTLIIQNVNKS 99
Query: 119 DQSVYFCRVELDTRSSGRQQWQSIEGTKLSITQGQQR 155
+Y CRV+ G + +Q GT L + Q R
Sbjct: 100 HGGIYVCRVQ-----EGNESYQQSCGTYLRVRQPPPR 131
>gi|116805342 human immunodeficiency virus type I enhancer binding
protein 1 [Homo sapiens]
Length = 2718
Score = 29.6 bits (65), Expect = 2.3
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 6/101 (5%)
Query: 124 FCRVELDTRSSGRQQWQSIEGTKLSITQG------QQRTKATTPAREPFQNTEEPYENIR 177
+C T+ + + +S +K + G ++ + ++ F Y+
Sbjct: 2120 YCNFSFKTKGNLTKHMKSKAHSKKCVDLGVSVGLIDEQDTEESDEKQRFSYERSGYDLEE 2179
Query: 178 NEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHRPLKS 218
++G + D N DD A LS++ S A P H P +S
Sbjct: 2180 SDGPDEDDNENEDDDEDSQAESVLSATPSVTASPQHLPSRS 2220
>gi|28872784 CDK5 regulatory subunit associated protein 1 isoform b
[Homo sapiens]
Length = 497
Score = 29.6 bits (65), Expect = 2.3
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 94 VNRLFLNWTEGQKSGFLRISNLQKQD 119
VN + W+ QKSG+LR SNLQ+ D
Sbjct: 23 VNDTEIAWSILQKSGYLRTSNLQEAD 48
>gi|28872782 CDK5 regulatory subunit associated protein 1 isoform a
[Homo sapiens]
Length = 587
Score = 29.6 bits (65), Expect = 2.3
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 94 VNRLFLNWTEGQKSGFLRISNLQKQD 119
VN + W+ QKSG+LR SNLQ+ D
Sbjct: 113 VNDTEIAWSILQKSGYLRTSNLQEAD 138
>gi|239753568 PREDICTED: hypothetical protein [Homo sapiens]
Length = 352
Score = 29.3 bits (64), Expect = 3.0
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 133 SSGRQQWQSIEGTKLSITQGQQRTKATTPAREPFQNTEEPYENIRNEGQNTDPKLNPKDD 192
+ G Q Q ++ +T T+ +P +P P+ + QN P DD
Sbjct: 202 AGGSQHQQPAGPAQVFLTLSLGSTRPRSPNSDPEAPRPGPHRRGASRNQN------PADD 255
Query: 193 GIVYASLALSSSTSPRAPPSHRP 215
S+S +P APP+H P
Sbjct: 256 YTDKIVPPSSASRAPTAPPAHAP 278
>gi|158508572 nuclear receptor subfamily 3, group C, member 2 [Homo
sapiens]
Length = 984
Score = 28.9 bits (63), Expect = 3.9
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 175 NIRNEGQNTDPKLNPKDDGIVYASLALSSSTSPRAPPSHR----PLKSPQNETLYS 226
N+ N G + + + G +S S +S +PPSH P+ SP N TL S
Sbjct: 240 NVENRGSRSHSPAHASNVGSPLSSPLSSMKSSISSPPSHCSVKSPVSSPNNVTLRS 295
>gi|239758119 PREDICTED: similar to hCG2042717 [Homo sapiens]
Length = 196
Score = 28.9 bits (63), Expect = 3.9
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 53 FSFYYPWELATAPDVRISWRRGHFHRQSFYSTRPPSIHKDYVNRLFLNWTEGQKSGFLRI 112
FS YY + AP + W + S Y+ S+ R ++ + S +L++
Sbjct: 58 FSDYYMSWIRQAPGKGLEWV-SYISSSSSYTNYADSVK----GRFTISRDNAKNSLYLQM 112
Query: 113 SNLQKQDQSVYFC 125
++L+ +D +VY+C
Sbjct: 113 NSLRAEDTAVYYC 125
>gi|193083163 roundabout, axon guidance receptor, homolog 2 isoform
ROBO2a [Homo sapiens]
Length = 1394
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 105 QKSGFLRISNLQKQDQSVYFCRVELDTRSSGRQQWQSI 142
Q+ G L+I NL+ D Y C + T SSG W ++
Sbjct: 484 QEQGTLQIKNLRISDTGTYTC---VATSSSGETSWSAV 518
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,256,943
Number of Sequences: 37866
Number of extensions: 477341
Number of successful extensions: 1684
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1651
Number of HSP's gapped (non-prelim): 80
length of query: 230
length of database: 18,247,518
effective HSP length: 99
effective length of query: 131
effective length of database: 14,498,784
effective search space: 1899340704
effective search space used: 1899340704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.