Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 29568099
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|29568099 p47 protein isoform b [Homo sapiens]
(339 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|29568099 p47 protein isoform b [Homo sapiens] 664 0.0
gi|20149635 p47 protein isoform a [Homo sapiens] 647 0.0
gi|33286434 p47 protein isoform c [Homo sapiens] 405 e-113
gi|117938297 UBX domain protein 2B [Homo sapiens] 276 2e-74
gi|33457320 UBX domain containing 4 [Homo sapiens] 156 2e-38
gi|116734681 socius isoform 1 [Homo sapiens] 45 1e-04
gi|116734679 socius isoform 2 [Homo sapiens] 45 1e-04
gi|116734689 socius isoform 3 [Homo sapiens] 44 3e-04
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ... 40 0.003
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ... 40 0.003
gi|38201625 eukaryotic translation initiation factor 4 gamma, 1 ... 40 0.003
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ... 40 0.003
gi|38201619 eukaryotic translation initiation factor 4 gamma, 1 ... 40 0.003
gi|24308237 phosphatidylinositol transfer protein, membrane-asso... 37 0.019
gi|118026942 zinc finger protein Cezanne [Homo sapiens] 35 0.096
gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42... 35 0.13
gi|149944496 UBX domain containing 7 [Homo sapiens] 34 0.16
gi|18702331 OTU domain containing 7A [Homo sapiens] 34 0.16
gi|75677335 digestive-organ expansion factor homolog [Homo sapiens] 33 0.28
gi|111548650 family with sequence similarity 170, member A [Homo... 33 0.36
gi|21687062 hypothetical protein LOC124402 [Homo sapiens] 33 0.36
gi|13129078 alveolar soft part sarcoma chromosome region, candid... 33 0.48
gi|32698954 hypothetical protein LOC283991 [Homo sapiens] 33 0.48
gi|29725609 epidermal growth factor receptor isoform a precursor... 32 0.62
gi|239751768 PREDICTED: hypothetical protein XP_002347973 isofor... 32 0.81
gi|239751766 PREDICTED: hypothetical protein XP_002347974 isofor... 32 0.81
gi|239751764 PREDICTED: hypothetical protein XP_002347975 isofor... 32 0.81
gi|30089954 H326 [Homo sapiens] 32 0.81
gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 32 1.1
gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 32 1.1
>gi|29568099 p47 protein isoform b [Homo sapiens]
Length = 339
Score = 664 bits (1712), Expect = 0.0
Identities = 339/339 (100%), Positives = 339/339 (100%)
Query: 1 MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSS 60
MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSS
Sbjct: 1 MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSS 60
Query: 61 VSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELVD 120
VSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELVD
Sbjct: 61 VSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELVD 120
Query: 121 DLFKGAKEHGAVAVERVTKSPGETSKPRVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLE 180
DLFKGAKEHGAVAVERVTKSPGETSKPRVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLE
Sbjct: 121 DLFKGAKEHGAVAVERVTKSPGETSKPRVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLE 180
Query: 181 SIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTS 240
SIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTS
Sbjct: 181 SIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTS 240
Query: 241 SPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPA 300
SPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPA
Sbjct: 241 SPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPA 300
Query: 301 MAATSFILMTTFPNKELADESQTLKEANLLNAVIVQRLT 339
MAATSFILMTTFPNKELADESQTLKEANLLNAVIVQRLT
Sbjct: 301 MAATSFILMTTFPNKELADESQTLKEANLLNAVIVQRLT 339
>gi|20149635 p47 protein isoform a [Homo sapiens]
Length = 370
Score = 647 bits (1670), Expect = 0.0
Identities = 339/370 (91%), Positives = 339/370 (91%), Gaps = 31/370 (8%)
Query: 1 MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSS 60
MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSS
Sbjct: 1 MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSS 60
Query: 61 VSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELVD 120
VSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELVD
Sbjct: 61 VSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELVD 120
Query: 121 DLFKGAKEHGAVAVERVTKSPGETSKPR-------------------------------V 149
DLFKGAKEHGAVAVERVTKSPGETSKPR V
Sbjct: 121 DLFKGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDV 180
Query: 150 HVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRD 209
HVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRD
Sbjct: 181 HVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRD 240
Query: 210 EDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQI 269
EDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQI
Sbjct: 241 EDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQI 300
Query: 270 RLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANL 329
RLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANL
Sbjct: 301 RLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANL 360
Query: 330 LNAVIVQRLT 339
LNAVIVQRLT
Sbjct: 361 LNAVIVQRLT 370
>gi|33286434 p47 protein isoform c [Homo sapiens]
Length = 259
Score = 405 bits (1040), Expect = e-113
Identities = 215/247 (87%), Positives = 216/247 (87%), Gaps = 31/247 (12%)
Query: 124 KGAKEHGAVAVERVTKSPGETSKPR-------------------------------VHVV 152
+GAKEHGAVAVERVTKSPGETSKPR VHVV
Sbjct: 13 RGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVV 72
Query: 153 LKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDF 212
LKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDF
Sbjct: 73 LKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDF 132
Query: 213 VKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLA 272
VKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLA
Sbjct: 133 VKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLA 192
Query: 273 DGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNA 332
DGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNA
Sbjct: 193 DGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNA 252
Query: 333 VIVQRLT 339
VIVQRLT
Sbjct: 253 VIVQRLT 259
>gi|117938297 UBX domain protein 2B [Homo sapiens]
Length = 331
Score = 276 bits (706), Expect = 2e-74
Identities = 157/349 (44%), Positives = 214/349 (61%), Gaps = 55/349 (15%)
Query: 17 GAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSSVSRGTAPSDNRVTSFR 76
G +E R+ + DLQ+ALA YED S+ P + T F+
Sbjct: 10 GEQERRSSGPRPPSARDLQLALAELYED-----------EVKCKSSKSNRP---KATVFK 55
Query: 77 DLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVER 136
QRFY+ E SG IV P S ++V++LFK A+EHGAV +
Sbjct: 56 S---------PRTPPQRFYSSEHEYSGLNIVRP----STGKIVNELFKEAREHGAVPLNE 102
Query: 137 VTKSPG---------------------------ETSKPRVHVVLKLWKSGFSLDNGELRS 169
T++ G E V ++LKLW +GFSLD+GELR
Sbjct: 103 ATRASGDDKSKSFTGGGYRLGSSFCKRSEYIYGENQLQDVQILLKLWSNGFSLDDGELRP 162
Query: 170 YQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKL 229
Y +P+NAQFLES++RGE+P EL+RL HGGQVNLDMEDH+D++++KP+ FKAF+GEGQKL
Sbjct: 163 YNEPTNAQFLESVKRGEIPLELQRLVHGGQVNLDMEDHQDQEYIKPRLRFKAFSGEGQKL 222
Query: 230 GSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISD 289
GS P+++ST S ++ E+++ ++ +LID+S PTT IQIRLADG RL+Q+FN +HRI D
Sbjct: 223 GSLTPEIVSTPSSPEE-EDKSILNAVVLIDDSVPTTKIQIRLADGSRLIQRFNSTHRILD 281
Query: 290 IRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQRL 338
+R FIV +RP AA FIL+T+FPNKEL DES TL EA++LN V++Q+L
Sbjct: 282 VRNFIVQSRPEFAALDFILVTSFPNKELTDESLTLLEADILNTVLLQQL 330
>gi|33457320 UBX domain containing 4 [Homo sapiens]
Length = 259
Score = 156 bits (395), Expect = 2e-38
Identities = 96/238 (40%), Positives = 150/238 (63%), Gaps = 11/238 (4%)
Query: 102 SGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRVHVVLKLWKSGFS 161
S Q +G ++ + VD LF+ A++ + V SP E K +V V +KLWK+GF+
Sbjct: 20 SDNQPLGNNQQSNCEYFVDSLFEEAQKVSSKCV-----SPAEQKK-QVDVNIKLWKNGFT 73
Query: 162 LDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKA 221
+ N + RSY D ++ QFL SI++GE+P+EL+ + +V++ +ED ++E + K F+
Sbjct: 74 V-NDDFRSYSDGASQQFLNSIKKGELPSELQGIFDKEEVDVKVEDKKNEICLSTKPVFQP 132
Query: 222 FTGEGQKLGSTAPQVLSTSSPAQQAENEAKAS-SSILIDESEPTTNIQIRLADGGRLVQK 280
F+G+G +LGS P+++S A+ E E K + S++ ++ EP TNIQI LA+G R+VQK
Sbjct: 133 FSGQGHRLGSATPKIVSK---AKNIEVENKNNLSAVPLNNLEPITNIQIWLANGKRIVQK 189
Query: 281 FNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQRL 338
FN +HR+S I+ FI + + + F L T P L DE+ TL+EA+L NAVI+QRL
Sbjct: 190 FNITHRVSHIKDFIEKYQGSQRSPPFSLATALPVLRLLDETLTLEEADLQNAVIIQRL 247
>gi|116734681 socius isoform 1 [Homo sapiens]
Length = 487
Score = 44.7 bits (104), Expect = 1e-04
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 22/161 (13%)
Query: 81 DQDEDEEE---EEGQRFYAGGSERSGQQIVGPPRKKSPNEL-VDDLFKGAKEHGAVAVE- 135
DQ++ E + E G+R + + ++ P +P E+ D L ++ + VE
Sbjct: 127 DQEDSESKTVSEHGERDWM-----TAKKFWKPGDSLAPPEVDFDRLLASLQDLSELVVEG 181
Query: 136 --RVTKSPG----ETSKPRVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPA 189
+VT PG T +P + LKL+++G + +G + + DPS + L I G P+
Sbjct: 182 DTQVTPVPGGARLRTLEP---IPLKLYRNGIMMFDGPFQPFYDPSTQRCLRDILDGFFPS 238
Query: 190 ELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLG 230
EL+RL G V + D R++ ++ + F GEG+ +G
Sbjct: 239 ELQRLYPNG-VPFKVSDLRNQVYL--EDGLDPFPGEGRVVG 276
>gi|116734679 socius isoform 2 [Homo sapiens]
Length = 520
Score = 44.7 bits (104), Expect = 1e-04
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 22/161 (13%)
Query: 81 DQDEDEEE---EEGQRFYAGGSERSGQQIVGPPRKKSPNEL-VDDLFKGAKEHGAVAVE- 135
DQ++ E + E G+R + + ++ P +P E+ D L ++ + VE
Sbjct: 160 DQEDSESKTVSEHGERDWM-----TAKKFWKPGDSLAPPEVDFDRLLASLQDLSELVVEG 214
Query: 136 --RVTKSPG----ETSKPRVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPA 189
+VT PG T +P + LKL+++G + +G + + DPS + L I G P+
Sbjct: 215 DTQVTPVPGGARLRTLEP---IPLKLYRNGIMMFDGPFQPFYDPSTQRCLRDILDGFFPS 271
Query: 190 ELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLG 230
EL+RL G V + D R++ ++ + F GEG+ +G
Sbjct: 272 ELQRLYPNG-VPFKVSDLRNQVYL--EDGLDPFPGEGRVVG 309
>gi|116734689 socius isoform 3 [Homo sapiens]
Length = 400
Score = 43.5 bits (101), Expect = 3e-04
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 28/167 (16%)
Query: 77 DLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELV------DDLFKGAKEHG 130
D++ D EE+ Y G +G P + + L D L ++
Sbjct: 38 DMLSDGCGSEEKISVPSCYGG---------IGAPVSRQGDSLAPPEVDFDRLLASLQDLS 88
Query: 131 AVAVE---RVTKSPG----ETSKPRVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIR 183
+ VE +VT PG T +P + LKL+++G + +G + + DPS + L I
Sbjct: 89 ELVVEGDTQVTPVPGGARLRTLEP---IPLKLYRNGIMMFDGPFQPFYDPSTQRCLRDIL 145
Query: 184 RGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLG 230
G P+EL+RL G V + D R++ ++ + F GEG+ +G
Sbjct: 146 DGFFPSELQRLYPNG-VPFKVSDLRNQVYL--EDGLDPFPGEGRVVG 189
>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 40.0 bits (92), Expect = 0.003
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 51 VTISQATPS--SVSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRFYAG--GSERSGQQI 106
VT S A P+ S + TAPS ++ +E+EEEEEG+ AG SE+ G+++
Sbjct: 428 VTASMAPPTIPSATPATAPSATSPAQEEEM----EEEEEEEEGEAGEAGEAESEKGGEEL 483
Query: 107 VGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSK 146
+ P P L +L A AV+V + + E +K
Sbjct: 484 LPPESTPIPANLSQNLEAAAATQVAVSVPKRRRKIKELNK 523
>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
isoform 2 [Homo sapiens]
Length = 1512
Score = 40.0 bits (92), Expect = 0.003
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 51 VTISQATPS--SVSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRFYAG--GSERSGQQI 106
VT S A P+ S + TAPS ++ +E+EEEEEG+ AG SE+ G+++
Sbjct: 341 VTASMAPPTIPSATPATAPSATSPAQEEEM----EEEEEEEEGEAGEAGEAESEKGGEEL 396
Query: 107 VGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSK 146
+ P P L +L A AV+V + + E +K
Sbjct: 397 LPPESTPIPANLSQNLEAAAATQVAVSVPKRRRKIKELNK 436
>gi|38201625 eukaryotic translation initiation factor 4 gamma, 1
isoform 3 [Homo sapiens]
Length = 1435
Score = 40.0 bits (92), Expect = 0.003
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 51 VTISQATPS--SVSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRFYAG--GSERSGQQI 106
VT S A P+ S + TAPS ++ +E+EEEEEG+ AG SE+ G+++
Sbjct: 264 VTASMAPPTIPSATPATAPSATSPAQEEEM----EEEEEEEEGEAGEAGEAESEKGGEEL 319
Query: 107 VGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSK 146
+ P P L +L A AV+V + + E +K
Sbjct: 320 LPPESTPIPANLSQNLEAAAATQVAVSVPKRRRKIKELNK 359
>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 40.0 bits (92), Expect = 0.003
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 51 VTISQATPS--SVSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRFYAG--GSERSGQQI 106
VT S A P+ S + TAPS ++ +E+EEEEEG+ AG SE+ G+++
Sbjct: 428 VTASMAPPTIPSATPATAPSATSPAQEEEM----EEEEEEEEGEAGEAGEAESEKGGEEL 483
Query: 107 VGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSK 146
+ P P L +L A AV+V + + E +K
Sbjct: 484 LPPESTPIPANLSQNLEAAAATQVAVSVPKRRRKIKELNK 523
>gi|38201619 eukaryotic translation initiation factor 4 gamma, 1
isoform 4 [Homo sapiens]
Length = 1403
Score = 40.0 bits (92), Expect = 0.003
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 51 VTISQATPS--SVSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRFYAG--GSERSGQQI 106
VT S A P+ S + TAPS ++ +E+EEEEEG+ AG SE+ G+++
Sbjct: 232 VTASMAPPTIPSATPATAPSATSPAQEEEM----EEEEEEEEGEAGEAGEAESEKGGEEL 287
Query: 107 VGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSK 146
+ P P L +L A AV+V + + E +K
Sbjct: 288 LPPESTPIPANLSQNLEAAAATQVAVSVPKRRRKIKELNK 327
>gi|24308237 phosphatidylinositol transfer protein,
membrane-associated 2 [Homo sapiens]
Length = 1349
Score = 37.4 bits (85), Expect = 0.019
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 32/170 (18%)
Query: 54 SQATPSSVSRGTAPSDNRVTSFR--DLIHDQDEDEEEE----------EGQRFYAGGSER 101
S + S RG +PS + ++ +R + D DE ++E + F ++
Sbjct: 307 SSKSSRSSKRGASPSRHSISEWRMQSIARDSDESSDDEFFDAHEDLSDTEEMFPKDITKW 366
Query: 102 SGQQIVGPPRKKSPNELVDDLFK-GAKE-HGAVAVERVTKSPGETSKP------RVHVVL 153
S ++ P + D L++ GA E A +VE++ E S+P ++HV+L
Sbjct: 367 SSNDLMDKIESPEPEDTQDGLYRQGAPEFRVASSVEQLNIIEDEVSQPLAAPPSKIHVLL 426
Query: 154 KLWKSGFSLDNGELRSYQDPSN--------AQFLESIRRGEVPAELRRLA 195
+ G LD G DPS+ A +++ R P+ L RLA
Sbjct: 427 LVLHGGTILDTGA----GDPSSKKGDANTIANVFDTVMRVHYPSALGRLA 472
>gi|118026942 zinc finger protein Cezanne [Homo sapiens]
Length = 843
Score = 35.0 bits (79), Expect = 0.096
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 1 MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQAT-PS 59
M + L +FV TGAE AR LE WD+ AL+ F E + + P
Sbjct: 1 MTLDMDAVLSDFVRSTGAEPGLARDLLEGKNWDVNAALSDF------EQLRQVHAGNLPP 54
Query: 60 SVSRGTAPSDNRVTSFRD 77
S S G+ S F D
Sbjct: 55 SFSEGSGGSRTPEKGFSD 72
>gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42
precursor [Homo sapiens]
Length = 2012
Score = 34.7 bits (78), Expect = 0.13
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 47 DEDIVTISQATPSSVSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRFYAGGSERS 102
D+ +T+S+ T SS++ P DN +S R I ED E+ G F SERS
Sbjct: 1381 DQPRLTVSKTTSSSITLSWLPGDNGGSSIRGYILQYSEDNSEQWGS-FPISPSERS 1435
>gi|149944496 UBX domain containing 7 [Homo sapiens]
Length = 489
Score = 34.3 bits (77), Expect = 0.16
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 9 LREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSSV 61
+++F +TGA E + LE+ +L++A+ F + GG + + S A+ S+V
Sbjct: 17 IQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGGGIAEEPSTSSASVSTV 69
>gi|18702331 OTU domain containing 7A [Homo sapiens]
Length = 926
Score = 34.3 bits (77), Expect = 0.16
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 1 MAAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASF 41
M + L +FV TGAE AR LE WDL AL+ +
Sbjct: 23 MTLDMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDY 63
>gi|75677335 digestive-organ expansion factor homolog [Homo sapiens]
Length = 756
Score = 33.5 bits (75), Expect = 0.28
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 26/156 (16%)
Query: 50 IVTISQATPSSVSRGTAPSDNRVTS--------FRDLIHDQDEDEEEEEGQRFYA----- 96
I +S+++ SS S + S+ + S +++ +++EDEEEEE +
Sbjct: 46 ICQLSESSDSSDSESDSESEPQQVSGYHRLLATLKNVSEEEEEDEEEEEEEDSIVDDAEM 105
Query: 97 ----GGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRVHVV 152
GGS+ S ++ + +SP + KE G SP E + + H
Sbjct: 106 NDEDGGSDVSVEEEMAAESTESPENVALSADPEGKEDGEEPPGTSQTSPEEFTDAK-HES 164
Query: 153 LKLWKSGF----SLDNGELRSYQDPSNAQFLESIRR 184
L ++ F S DN L++ QDP FL+ + +
Sbjct: 165 LFSLETNFLEEESGDNSSLKASQDP----FLQHVNK 196
>gi|111548650 family with sequence similarity 170, member A [Homo
sapiens]
Length = 329
Score = 33.1 bits (74), Expect = 0.36
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 29 SAGWDLQIALASFYEDGGDEDIVTISQATPSSVSRGTAPSDNRVTSFRDLIHDQDEDEEE 88
+ W+ + L S + E+ VT+S+ V GT PSD S R+L+ D + EE
Sbjct: 140 AVSWETEETLESLEKQPRMEE-VTLSEV----VRVGTPPSD---VSTRNLLSDSEPSGEE 191
Query: 89 EEGQRFYAGGSERSGQQIVGPPRKKSPNELV 119
+E + S + PR K+P+ LV
Sbjct: 192 KEHEERTESDSLPGSPTVEDTPRAKTPDWLV 222
>gi|21687062 hypothetical protein LOC124402 [Homo sapiens]
Length = 177
Score = 33.1 bits (74), Expect = 0.36
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 4 ERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYED 44
+ Q + +FV G D+A+ L++A W + AL++F+++
Sbjct: 9 KHQVMINQFVLTAGCAADQAKQLLQAAHWQFETALSAFFQE 49
>gi|13129078 alveolar soft part sarcoma chromosome region, candidate
1 [Homo sapiens]
Length = 553
Score = 32.7 bits (73), Expect = 0.48
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 260 ESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELAD 319
E P +++ D L F S + D+R F V + SF L T P L D
Sbjct: 386 ERYPKVALRVLFPDRYVLQGFFRPSETVGDLRDF-VRSHLGNPELSFYLFITPPKTVLDD 444
Query: 320 ESQTLKEANLLNAVIV 335
+QTL +ANL A +V
Sbjct: 445 HTQTLFQANLFPAALV 460
>gi|32698954 hypothetical protein LOC283991 [Homo sapiens]
Length = 164
Score = 32.7 bits (73), Expect = 0.48
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 6 QEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYED 44
Q + +FV G D+A+ L++A W + AL++F+++
Sbjct: 11 QVMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQE 49
>gi|29725609 epidermal growth factor receptor isoform a precursor
[Homo sapiens]
Length = 1210
Score = 32.3 bits (72), Expect = 0.62
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 170 YQDP-----SNAQFLESIRRGEVPAELRRLAHGGQ-----VNLDMEDHRDEDF---VKPK 216
YQDP N ++L +++ V + AH Q ++LD D++ + F KP
Sbjct: 1125 YQDPHSTAVGNPEYLNTVQPTCVNSTFDSPAHWAQKGSHQISLDNPDYQQDFFPKEAKPN 1184
Query: 217 GAFKAFTGEGQKLGSTAPQ 235
G FK T E + APQ
Sbjct: 1185 GIFKGSTAENAEYLRVAPQ 1203
>gi|239751768 PREDICTED: hypothetical protein XP_002347973 isoform 1
[Homo sapiens]
Length = 479
Score = 32.0 bits (71), Expect = 0.81
Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 25/151 (16%)
Query: 77 DLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVER 136
++IH+++++ E E ++ + GS+ Q + +K S N K A H + +
Sbjct: 108 EIIHNKEKEPECGECRKIFNSGSDLIKHQTLHESKKHSENN------KCAFNHDSGITQP 161
Query: 137 VTKSPGETSKPRVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAH 196
+ + GE KP K + G ++++ S + + GE P + R
Sbjct: 162 QSINTGE--KPH-----KCKECG--------KAFRSSSQISQHQRMHLGEKPYKCRECGK 206
Query: 197 G----GQVNLDMEDHRDEDFVKPKGAFKAFT 223
Q+NL H DE + + K KAFT
Sbjct: 207 AFPSTAQLNLHQRIHTDEKYYECKECGKAFT 237
>gi|239751766 PREDICTED: hypothetical protein XP_002347974 isoform 2
[Homo sapiens]
Length = 479
Score = 32.0 bits (71), Expect = 0.81
Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 25/151 (16%)
Query: 77 DLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVER 136
++IH+++++ E E ++ + GS+ Q + +K S N K A H + +
Sbjct: 108 EIIHNKEKEPECGECRKIFNSGSDLIKHQTLHESKKHSENN------KCAFNHDSGITQP 161
Query: 137 VTKSPGETSKPRVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAH 196
+ + GE KP K + G ++++ S + + GE P + R
Sbjct: 162 QSINTGE--KPH-----KCKECG--------KAFRSSSQISQHQRMHLGEKPYKCRECGK 206
Query: 197 G----GQVNLDMEDHRDEDFVKPKGAFKAFT 223
Q+NL H DE + + K KAFT
Sbjct: 207 AFPSTAQLNLHQRIHTDEKYYECKECGKAFT 237
>gi|239751764 PREDICTED: hypothetical protein XP_002347975 isoform 3
[Homo sapiens]
Length = 543
Score = 32.0 bits (71), Expect = 0.81
Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 25/151 (16%)
Query: 77 DLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVER 136
++IH+++++ E E ++ + GS+ Q + +K S N K A H + +
Sbjct: 172 EIIHNKEKEPECGECRKIFNSGSDLIKHQTLHESKKHSENN------KCAFNHDSGITQP 225
Query: 137 VTKSPGETSKPRVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAH 196
+ + GE KP K + G ++++ S + + GE P + R
Sbjct: 226 QSINTGE--KPH-----KCKECG--------KAFRSSSQISQHQRMHLGEKPYKCRECGK 270
Query: 197 G----GQVNLDMEDHRDEDFVKPKGAFKAFT 223
Q+NL H DE + + K KAFT
Sbjct: 271 AFPSTAQLNLHQRIHTDEKYYECKECGKAFT 301
>gi|30089954 H326 [Homo sapiens]
Length = 597
Score = 32.0 bits (71), Expect = 0.81
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 15 VTGAEEDRARFF-LESAGWDLQIALASFYEDGGDEDIVTISQATPSSVSRGTAPSDNRVT 73
++GAEE R +E DL ++L +DGG T S+ T + S SD+
Sbjct: 26 MSGAEEGRETSSGIEVEASDLSLSLTG--DDGGPNRTSTESRGTDTESSGEDKDSDSMED 83
Query: 74 SFR------DLIHDQDEDEEEEE 90
+ + +HD+ E+EEEEE
Sbjct: 84 TGHYSINDENRVHDRSEEEEEEE 106
>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
Length = 517
Score = 31.6 bits (70), Expect = 1.1
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 46 GDEDIVTISQATPSSVSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRFYAGGSERSGQQ 105
G + T+S+ +P S S+ D ++D++EEE+E G E S +
Sbjct: 75 GGGEAETMSEPSPESASQAGEDEDE----------EEDDEEEEDESSSSGGGEEESSAES 124
Query: 106 IVGPPRKKSPNE 117
+VG S +E
Sbjct: 125 LVGSSGGSSSDE 136
>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
Length = 503
Score = 31.6 bits (70), Expect = 1.1
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 46 GDEDIVTISQATPSSVSRGTAPSDNRVTSFRDLIHDQDEDEEEEEGQRFYAGGSERSGQQ 105
G + T+S+ +P S S+ D ++D++EEE+E G E S +
Sbjct: 75 GGGEAETMSEPSPESASQAGEDEDE----------EEDDEEEEDESSSSGGGEEESSAES 124
Query: 106 IVGPPRKKSPNE 117
+VG S +E
Sbjct: 125 LVGSSGGSSSDE 136
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,960,562
Number of Sequences: 37866
Number of extensions: 620693
Number of successful extensions: 2711
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 2600
Number of HSP's gapped (non-prelim): 113
length of query: 339
length of database: 18,247,518
effective HSP length: 103
effective length of query: 236
effective length of database: 14,347,320
effective search space: 3385967520
effective search space used: 3385967520
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.