Guide to the Human Genome
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Name: FAM100A Sequence: fasta or formatted (177aa) NCBI GI: 21687062
Description:

hypothetical protein LOC124402

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.3         27           2
 C cysteine            1.1          2           1
 D aspartate           2.3          4           1
 E glutamate           4.0          7           1
 F phenylalanine       4.5          8           2
 G glycine             3.4          6           2
 H histidine           6.8         12           4
 I isoleucine          1.1          2           1
 K lysine              1.7          3           1
 L leucine             5.1          9           2
 M methionine          4.5          8           2
 N asparagine          2.8          5           1
 P proline            15.3         27           3
 Q glutamine           7.3         13           2
 R arginine            1.7          3           1
 S serine             10.7         19           3
 T threonine           7.9         14           1
 V valine              1.7          3           1
 W tryptophan          2.3          4           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC124402 
FAM100B               0.514   hypothetical protein LOC283991 
KIF13B                0.062   kinesin family member 13B 
SALL3                 0.056   sal-like 3 
MLL2                  0.051   myeloid/lymphoid or mixed-lineage leukemia 2 
SAMD1                 0.051   sterile alpha motif domain containing 1 
FLJ22184              0.048   PREDICTED: hypothetical protein FLJ22184 
C9orf86               0.048   Rab-like GTP-binding protein 1 isoform 2 
C9orf86               0.048   Rab-like GTP-binding protein 1 isoform 1 
LOC729978             0.048   PREDICTED: NPIP-like protein 2 isoform 2 
NCOR2                 0.048   nuclear receptor co-repressor 2 isoform 1 
PRR12                 0.048   proline rich 12 
ATXN1L                0.045   ataxin 1-like 
PI16                  0.045   protease inhibitor 16 precursor 
MUC7                  0.045   mucin 7, secreted precursor 
SETD1A                0.045   SET domain containing 1A 
MUC7                  0.045   mucin 7, secreted precursor 
MUC7                  0.045   mucin 7, secreted precursor 
ATN1                  0.045   atrophin-1 
ATN1                  0.045   atrophin-1 
RPH3A                 0.045   rabphilin 3A homolog isoform 1 
RPH3A                 0.045   rabphilin 3A homolog isoform 2 
NACA                  0.045   nascent polypeptide-associated complex alpha subuni...
FMNL1                 0.045   formin-like 1 
FOXL2                 0.042   forkhead box L2 
MUC2                  0.042   mucin 2 precursor 
ESX1                  0.042   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
SETD1B                0.042   SET domain containing 1B 
SFPQ                  0.042   splicing factor proline/glutamine rich (polypyrimidin...
RTN4                  0.042   reticulon 4 isoform B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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