Guide to the Human Genome
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Name: FAM100B Sequence: fasta or formatted (164aa) NCBI GI: 32698954
Description:

hypothetical protein LOC283991

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.0         23           3
 C cysteine            1.8          3           1
 D aspartate           2.4          4           1
 E glutamate           2.4          4           1
 F phenylalanine       5.5          9           2
 G glycine             3.7          6           2
 H histidine           6.1         10           4
 I isoleucine          1.8          3           1
 K lysine              1.8          3           1
 L leucine             5.5          9           2
 M methionine          5.5          9           2
 N asparagine          4.9          8           1
 P proline            12.2         20           2
 Q glutamine           9.8         16           2
 R arginine            2.4          4           1
 S serine              9.8         16           2
 T threonine           6.1         10           2
 V valine              1.8          3           1
 W tryptophan          2.4          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC283991 
FAM100A               0.560   hypothetical protein LOC124402 
BRD4                  0.040   bromodomain-containing protein 4 isoform long 
FLJ22184              0.037   PREDICTED: hypothetical protein FLJ22184 
NACA                  0.034   nascent polypeptide-associated complex alpha subuni...
MUC6                  0.031   mucin 6, gastric 
ZCCHC14               0.031   zinc finger, CCHC domain containing 14 
CNOT4                 0.031   CCR4-NOT transcription complex, subunit 4 isoform a ...
SRRM1                 0.028   serine/arginine repetitive matrix 1 
ATN1                  0.028   atrophin-1 
ATN1                  0.028   atrophin-1 
MAPK1IP1L             0.028   MAPK-interacting and spindle-stabilizing protein [Ho...
MUC2                  0.025   mucin 2 precursor 
SYVN1                 0.025   synoviolin 1 isoform b 
SYVN1                 0.025   synoviolin 1 isoform a 
C21orf58              0.025   hypothetical protein LOC54058 
PAX7                  0.025   paired box 7 isoform 1 
PAX7                  0.025   paired box 7 isoform 2 
PAX7                  0.025   paired box 7 isoform 3 
NSD1                  0.025   nuclear receptor binding SET domain protein 1 isofor...
NSD1                  0.025   nuclear receptor binding SET domain protein 1 isofor...
NSFL1C                0.025   p47 protein isoform b 
NSFL1C                0.025   p47 protein isoform a 
WIPF3                 0.025   WAS/WASL interacting protein family, member 3 [Homo...
SETD1B                0.025   SET domain containing 1B 
LOC100128056          0.022   PREDICTED: hypothetical protein 
LOC100287204          0.022   PREDICTED: hypothetical protein 
LOC100128056          0.022   PREDICTED: hypothetical protein 
LOC100287204          0.022   PREDICTED: hypothetical protein XP_002343693 
LOC100128056          0.022   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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