Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZNF555 Sequence: fasta or formatted (628aa) NCBI GI: 40255145
Description:

zinc finger protein 555

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         25           1
 C cysteine            6.1         38           1
 D aspartate           2.5         16           2
 E glutamate           7.8         49           2
 F phenylalanine       4.6         29           1
 G glycine             5.6         35           2
 H histidine           6.5         41           1
 I isoleucine          3.3         21           1
 K lysine              9.4         59           2
 L leucine             5.4         34           2
 M methionine          2.1         13           1
 N asparagine          2.5         16           2
 P proline             4.5         28           2
 Q glutamine           4.5         28           2
 R arginine            6.8         43           2
 S serine              8.4         53           3
 T threonine           6.5         41           2
 V valine              4.0         25           2
 W tryptophan          1.0          6           1
 Y tyrosine            4.5         28           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 555 
ZNF709                0.477   zinc finger protein 709 isoform a 
ZNF699                0.468   zinc finger protein 699 
ZNF14                 0.464   zinc finger protein 14 
ZNF791                0.464   zinc finger protein 791 
ZNF564                0.453   zinc finger protein 564 
ZNF57                 0.453   zinc finger protein 57 
ZNF709                0.446   zinc finger protein 709 isoform b 
ZNF420                0.430   zinc finger protein 420 
ZNF44                 0.425   zinc finger protein 44 
ZNF77                 0.424   zinc finger protein 77 
ZNF443                0.422   zinc finger protein 443 
ZNF700                0.420   zinc finger protein 700 
LOC100292533          0.416   PREDICTED: similar to zinc finger protein 564 [Homo...
ZNF799                0.415   zinc finger protein 799 
LOC100290363          0.414   PREDICTED: hypothetical protein XP_002347962 
LOC100287841          0.414   PREDICTED: hypothetical protein XP_002343682 
LOC729747             0.414   similar to zinc finger protein 709 
ZNF433                0.413   zinc finger protein 433 
ZNF442                0.412   zinc finger protein 442 
ZNF93                 0.409   zinc finger protein 93 
ZNF823                0.407   ZFP-36 for a zinc finger protein 
ZNF136                0.407   zinc finger protein 136 
ZNF135                0.406   zinc finger protein 135 
ZNF283                0.403   zinc finger protein 283 
ZNF184                0.401   zinc finger protein 184 
ZNF595                0.398   zinc finger protein 595 
ZNF429                0.395   zinc finger protein 429 
ZNF665                0.395   zinc finger protein 665 
ZNF441                0.394   zinc finger protein 441 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press