Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZNF439 Sequence: fasta or formatted (499aa) NCBI GI: 22748625
Description:

zinc finger protein 439

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         21           1
 C cysteine            6.2         31           1
 D aspartate           2.2         11           2
 E glutamate           8.4         42           2
 F phenylalanine       4.8         24           1
 G glycine             6.4         32           1
 H histidine           6.2         31           1
 I isoleucine          3.0         15           2
 K lysine             11.0         55           3
 L leucine             4.6         23           2
 M methionine          1.6          8           1
 N asparagine          3.0         15           1
 P proline             4.4         22           1
 Q glutamine           4.8         24           2
 R arginine            7.4         37           2
 S serine              7.4         37           3
 T threonine           5.6         28           1
 V valine              2.8         14           2
 W tryptophan          1.0          5           1
 Y tyrosine            4.8         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 439 
ZNF440                0.775   zinc finger protein 440 
ZNF700                0.770   zinc finger protein 700 
ZNF433                0.592   zinc finger protein 433 
ZNF763                0.559   zinc finger protein 440 like 
ZNF20                 0.548   zinc finger protein 20 
ZNF709                0.512   zinc finger protein 709 isoform a 
ZNF627                0.511   zinc finger protein 627 
ZNF491                0.511   zinc finger protein 491 
LOC729747             0.510   similar to zinc finger protein 709 
ZNF823                0.501   ZFP-36 for a zinc finger protein 
ZNF136                0.492   zinc finger protein 136 
ZNF564                0.488   zinc finger protein 564 
ZNF791                0.487   zinc finger protein 791 
ZNF442                0.482   zinc finger protein 442 
ZNF563                0.482   zinc finger protein 563 
ZNF44                 0.481   zinc finger protein 44 
ZNF490                0.481   zinc finger protein 490 
ZNF14                 0.477   zinc finger protein 14 
ZNF799                0.477   zinc finger protein 799 
LOC100292533          0.470   PREDICTED: similar to zinc finger protein 564 [Homo...
LOC100290363          0.470   PREDICTED: hypothetical protein XP_002347962 
LOC100287841          0.470   PREDICTED: hypothetical protein XP_002343682 
ZNF709                0.469   zinc finger protein 709 isoform b 
ZNF443                0.465   zinc finger protein 443 
ZNF441                0.449   zinc finger protein 441 
ZNF844                0.445   zinc finger protein 844 
ZNF77                 0.405   zinc finger protein 77 
ZNF699                0.400   zinc finger protein 699 
ZNF555                0.394   zinc finger protein 555 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press