Guide to the Human Genome
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Name: LOC100292533 Sequence: fasta or formatted (577aa) NCBI GI: 239757147
Description:

PREDICTED: similar to zinc finger protein 564

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         28           1
 C cysteine            6.2         36           2
 D aspartate           1.6          9           1
 E glutamate           8.1         47           2
 F phenylalanine       4.7         27           1
 G glycine             6.9         40           2
 H histidine           7.3         42           2
 I isoleucine          2.6         15           1
 K lysine             13.5         78           3
 L leucine             3.8         22           2
 M methionine          1.7         10           1
 N asparagine          2.4         14           1
 P proline             3.1         18           1
 Q glutamine           4.2         24           1
 R arginine            5.2         30           2
 S serine              7.8         45           4
 T threonine           5.9         34           1
 V valine              3.1         18           1
 W tryptophan          0.9          5           1
 Y tyrosine            6.1         35           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to zinc finger protein 564 [Homo... 
LOC100290363          0.921   PREDICTED: hypothetical protein XP_002347962 
LOC100287841          0.921   PREDICTED: hypothetical protein XP_002343682 
ZNF709                0.557   zinc finger protein 709 isoform a 
ZNF14                 0.523   zinc finger protein 14 
ZNF791                0.517   zinc finger protein 791 
ZNF709                0.510   zinc finger protein 709 isoform b 
ZNF564                0.502   zinc finger protein 564 
ZNF136                0.495   zinc finger protein 136 
ZNF433                0.480   zinc finger protein 433 
ZNF20                 0.476   zinc finger protein 20 
LOC729747             0.469   similar to zinc finger protein 709 
ZNF700                0.459   zinc finger protein 700 
ZNF490                0.458   zinc finger protein 490 
ZNF555                0.448   zinc finger protein 555 
ZNF44                 0.442   zinc finger protein 44 
ZNF823                0.441   ZFP-36 for a zinc finger protein 
ZNF443                0.438   zinc finger protein 443 
ZNF799                0.431   zinc finger protein 799 
ZNF442                0.431   zinc finger protein 442 
ZNF441                0.425   zinc finger protein 441 
ZNF627                0.420   zinc finger protein 627 
ZNF699                0.412   zinc finger protein 699 
ZNF439                0.404   zinc finger protein 439 
ZNF420                0.387   zinc finger protein 420 
ZNF440                0.387   zinc finger protein 440 
ZNF491                0.386   zinc finger protein 491 
ZNF57                 0.386   zinc finger protein 57 
ZNF283                0.384   zinc finger protein 283 
ZNF569                0.384   zinc finger protein 569 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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