Guide to the Human Genome
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Name: ZNF823 Sequence: fasta or formatted (610aa) NCBI GI: 122937422
Description:

ZFP-36 for a zinc finger protein

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         24           2
 C cysteine            7.4         45           1
 D aspartate           3.0         18           2
 E glutamate           7.9         48           2
 F phenylalanine       4.6         28           1
 G glycine             7.4         45           1
 H histidine           7.9         48           2
 I isoleucine          2.5         15           1
 K lysine             10.2         62           2
 L leucine             5.2         32           2
 M methionine          1.0          6           1
 N asparagine          2.5         15           1
 P proline             4.3         26           2
 Q glutamine           4.3         26           1
 R arginine            6.1         37           2
 S serine              7.4         45           3
 T threonine           7.4         45           2
 V valine              2.5         15           2
 W tryptophan          0.8          5           1
 Y tyrosine            4.1         25           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ZFP-36 for a zinc finger protein 
ZNF442                0.771   zinc finger protein 442 
ZNF799                0.761   zinc finger protein 799 
ZNF443                0.758   zinc finger protein 443 
ZNF44                 0.740   zinc finger protein 44 
ZNF441                0.580   zinc finger protein 441 
ZNF709                0.576   zinc finger protein 709 isoform a 
ZNF700                0.536   zinc finger protein 700 
ZNF709                0.532   zinc finger protein 709 isoform b 
ZNF433                0.529   zinc finger protein 433 
ZNF563                0.523   zinc finger protein 563 
ZNF14                 0.522   zinc finger protein 14 
ZNF791                0.482   zinc finger protein 791 
ZNF136                0.462   zinc finger protein 136 
ZNF20                 0.453   zinc finger protein 20 
ZNF564                0.442   zinc finger protein 564 
LOC729747             0.430   similar to zinc finger protein 709 
ZNF420                0.428   zinc finger protein 420 
ZNF627                0.427   zinc finger protein 627 
ZNF491                0.411   zinc finger protein 491 
ZNF555                0.410   zinc finger protein 555 
ZNF440                0.407   zinc finger protein 440 
ZNF665                0.404   zinc finger protein 665 
ZNF439                0.402   zinc finger protein 439 
LOC100292052          0.401   PREDICTED: similar to hCG1773661 
LOC100287226          0.401   PREDICTED: similar to hCG1773661 
LOC100287226          0.401   PREDICTED: hypothetical protein XP_002343677 
ZNF569                0.400   zinc finger protein 569 
LOC100292533          0.399   PREDICTED: similar to zinc finger protein 564 [Homo...
LOC100290363          0.398   PREDICTED: hypothetical protein XP_002347962 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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