Guide to the Human Genome
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Name: ZNF564 Sequence: fasta or formatted (553aa) NCBI GI: 21699060
Description:

zinc finger protein 564

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         21           1
 C cysteine            6.7         37           1
 D aspartate           3.3         18           1
 E glutamate           8.3         46           2
 F phenylalanine       5.1         28           1
 G glycine             7.2         40           1
 H histidine           6.3         35           2
 I isoleucine          4.3         24           1
 K lysine              9.4         52           2
 L leucine             3.8         21           2
 M methionine          1.6          9           1
 N asparagine          2.7         15           1
 P proline             5.2         29           1
 Q glutamine           4.0         22           1
 R arginine            6.9         38           2
 S serine              7.8         43           4
 T threonine           5.6         31           1
 V valine              3.3         18           1
 W tryptophan          0.5          3           1
 Y tyrosine            4.2         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 564 
ZNF709                0.609   zinc finger protein 709 isoform a 
ZNF136                0.594   zinc finger protein 136 
ZNF14                 0.573   zinc finger protein 14 
ZNF709                0.564   zinc finger protein 709 isoform b 
ZNF791                0.538   zinc finger protein 791 
ZNF823                0.532   ZFP-36 for a zinc finger protein 
ZNF20                 0.529   zinc finger protein 20 
ZNF433                0.528   zinc finger protein 433 
ZNF441                0.526   zinc finger protein 441 
LOC100292533          0.525   PREDICTED: similar to zinc finger protein 564 [Homo...
ZNF44                 0.524   zinc finger protein 44 
LOC100290363          0.523   PREDICTED: hypothetical protein XP_002347962 
LOC100287841          0.523   PREDICTED: hypothetical protein XP_002343682 
ZNF700                0.522   zinc finger protein 700 
ZNF443                0.515   zinc finger protein 443 
ZNF799                0.512   zinc finger protein 799 
ZNF555                0.511   zinc finger protein 555 
ZNF442                0.508   zinc finger protein 442 
LOC729747             0.498   similar to zinc finger protein 709 
ZNF490                0.487   zinc finger protein 490 
ZNF627                0.472   zinc finger protein 627 
ZNF699                0.439   zinc finger protein 699 
ZNF440                0.438   zinc finger protein 440 
ZNF420                0.435   zinc finger protein 420 
ZNF93                 0.431   zinc finger protein 93 
LOC100290283          0.428   PREDICTED: hypothetical protein XP_002347961 
ZNF563                0.424   zinc finger protein 563 
ZNF569                0.423   zinc finger protein 569 
ZNF726                0.422   PREDICTED: zinc finger protein 726 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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