Guide to the Human Genome
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Name: LOC100287841 Sequence: fasta or formatted (540aa) NCBI GI: 239746166
Description:

PREDICTED: hypothetical protein XP_002343682

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         28           1
 C cysteine            6.5         35           2
 D aspartate           1.3          7           1
 E glutamate           8.3         45           2
 F phenylalanine       4.4         24           1
 G glycine             7.4         40           2
 H histidine           7.4         40           2
 I isoleucine          2.8         15           1
 K lysine             13.7         74           2
 L leucine             3.5         19           2
 M methionine          1.1          6           1
 N asparagine          2.4         13           1
 P proline             3.0         16           1
 Q glutamine           4.4         24           1
 R arginine            5.6         30           2
 S serine              7.2         39           4
 T threonine           6.1         33           1
 V valine              3.0         16           1
 W tryptophan          0.9          5           1
 Y tyrosine            5.7         31           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343682 
LOC100290363          1.000   PREDICTED: hypothetical protein XP_002347962 
LOC100292533          0.984   PREDICTED: similar to zinc finger protein 564 [Homo...
ZNF709                0.593   zinc finger protein 709 isoform a 
ZNF14                 0.556   zinc finger protein 14 
ZNF791                0.550   zinc finger protein 791 
ZNF709                0.544   zinc finger protein 709 isoform b 
ZNF564                0.535   zinc finger protein 564 
ZNF136                0.528   zinc finger protein 136 
ZNF433                0.512   zinc finger protein 433 
ZNF20                 0.509   zinc finger protein 20 
LOC729747             0.500   similar to zinc finger protein 709 
ZNF490                0.490   zinc finger protein 490 
ZNF700                0.488   zinc finger protein 700 
ZNF555                0.477   zinc finger protein 555 
ZNF44                 0.471   zinc finger protein 44 
ZNF823                0.469   ZFP-36 for a zinc finger protein 
ZNF443                0.467   zinc finger protein 443 
ZNF799                0.459   zinc finger protein 799 
ZNF442                0.459   zinc finger protein 442 
ZNF441                0.451   zinc finger protein 441 
ZNF627                0.447   zinc finger protein 627 
ZNF699                0.440   zinc finger protein 699 
ZNF439                0.432   zinc finger protein 439 
ZNF420                0.413   zinc finger protein 420 
ZNF491                0.412   zinc finger protein 491 
ZNF440                0.412   zinc finger protein 440 
ZNF57                 0.411   zinc finger protein 57 
ZNF569                0.410   zinc finger protein 569 
ZNF283                0.410   zinc finger protein 283 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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