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Search of human proteins with 12232413
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|12232413 poly ADP-ribose polymerase 12 [Homo sapiens]
(701 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|12232413 poly ADP-ribose polymerase 12 [Homo sapiens] 1461 0.0
gi|27477136 zinc finger antiviral protein isoform 1 [Homo sapiens] 292 6e-79
gi|194328777 poly (ADP-ribose) polymerase family, member 11 [Hom... 221 2e-57
gi|38524594 TCDD-inducible poly(ADP-ribose) polymerase [Homo sap... 202 1e-51
gi|27477138 zinc finger antiviral protein isoform 2 [Homo sapiens] 167 4e-41
gi|22749259 poly (ADP-ribose) polymerase family, member 15 isofo... 140 5e-33
gi|165377137 poly (ADP-ribose) polymerase family, member 15 isof... 140 5e-33
gi|18087829 zinc finger CCCH-type, antiviral 1-like [Homo sapiens] 138 2e-32
gi|154813199 poly (ADP-ribose) polymerase family, member 14 [Hom... 128 2e-29
gi|157738665 poly (ADP-ribose) polymerase family, member 10 [Hom... 93 7e-19
gi|13376842 tankyrase, TRF1-interacting ankyrin-related ADP-ribo... 62 1e-09
gi|226371716 poly (ADP-ribose) polymerase family, member 9 isofo... 62 2e-09
gi|226371714 poly (ADP-ribose) polymerase family, member 9 isofo... 62 2e-09
gi|226371712 poly (ADP-ribose) polymerase family, member 9 isofo... 62 2e-09
gi|226371710 poly (ADP-ribose) polymerase family, member 9 isofo... 62 2e-09
gi|226371706 poly (ADP-ribose) polymerase family, member 9 isofo... 62 2e-09
gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribo... 55 2e-07
gi|193788659 cleavage and polyadenylation specific factor 4-like... 43 9e-04
gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens] 38 0.037
gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens] 38 0.037
gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo ... 38 0.037
gi|5032243 makorin ring finger protein 3 [Homo sapiens] 36 0.11
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 36 0.11
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap... 36 0.11
gi|125987603 cleavage and polyadenylation specific factor 4, 30k... 35 0.24
gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa... 35 0.24
gi|32880199 makorin ring finger protein 2 [Homo sapiens] 35 0.24
gi|6679074 nucleoporin like 2 [Homo sapiens] 34 0.40
gi|118150660 erythropoietin 4 immediate early response [Homo sap... 34 0.40
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 33 1.2
>gi|12232413 poly ADP-ribose polymerase 12 [Homo sapiens]
Length = 701
Score = 1461 bits (3783), Expect = 0.0
Identities = 701/701 (100%), Positives = 701/701 (100%)
Query: 1 MAQAGVVGEVTQVLCAAGGALELPELRRRLRMGLSADALERLLRQRGRFVVAVRAGGAAA 60
MAQAGVVGEVTQVLCAAGGALELPELRRRLRMGLSADALERLLRQRGRFVVAVRAGGAAA
Sbjct: 1 MAQAGVVGEVTQVLCAAGGALELPELRRRLRMGLSADALERLLRQRGRFVVAVRAGGAAA 60
Query: 61 APERVVLAASPLRLCRAHQGSKPGCVGLCAQLHLCRFMVYGACKFLRAGKNCRNSHSLTT 120
APERVVLAASPLRLCRAHQGSKPGCVGLCAQLHLCRFMVYGACKFLRAGKNCRNSHSLTT
Sbjct: 61 APERVVLAASPLRLCRAHQGSKPGCVGLCAQLHLCRFMVYGACKFLRAGKNCRNSHSLTT 120
Query: 121 EHNLSVLRTHGVDHLSYNELCQLLFQNDPWLLPEICQHYNKGDGPHGSCAFQKQCIKLHI 180
EHNLSVLRTHGVDHLSYNELCQLLFQNDPWLLPEICQHYNKGDGPHGSCAFQKQCIKLHI
Sbjct: 121 EHNLSVLRTHGVDHLSYNELCQLLFQNDPWLLPEICQHYNKGDGPHGSCAFQKQCIKLHI 180
Query: 181 CQYFLQGECKFGTSCKRSHDFSNSENLEKLEKLGMSSDLVSRLPTIYRNAHDIKNKSSAP 240
CQYFLQGECKFGTSCKRSHDFSNSENLEKLEKLGMSSDLVSRLPTIYRNAHDIKNKSSAP
Sbjct: 181 CQYFLQGECKFGTSCKRSHDFSNSENLEKLEKLGMSSDLVSRLPTIYRNAHDIKNKSSAP 240
Query: 241 SRVPPLFVPQGTSERKDSSGSVSPNTLSQEEGDQICLYHIRKSCSFQDKCHRVHFHLPYR 300
SRVPPLFVPQGTSERKDSSGSVSPNTLSQEEGDQICLYHIRKSCSFQDKCHRVHFHLPYR
Sbjct: 241 SRVPPLFVPQGTSERKDSSGSVSPNTLSQEEGDQICLYHIRKSCSFQDKCHRVHFHLPYR 300
Query: 301 WQFLDRGKWEDLDNMELIEEAYCNPKIERILCSESASTFHSHCLNFNAMTYGATQARRLS 360
WQFLDRGKWEDLDNMELIEEAYCNPKIERILCSESASTFHSHCLNFNAMTYGATQARRLS
Sbjct: 301 WQFLDRGKWEDLDNMELIEEAYCNPKIERILCSESASTFHSHCLNFNAMTYGATQARRLS 360
Query: 361 TASSVTKPPHFILTTDWIWYWSDEFGSWQEYGRQGTVHPVTTVSSSDVEKAYLAYCTPGS 420
TASSVTKPPHFILTTDWIWYWSDEFGSWQEYGRQGTVHPVTTVSSSDVEKAYLAYCTPGS
Sbjct: 361 TASSVTKPPHFILTTDWIWYWSDEFGSWQEYGRQGTVHPVTTVSSSDVEKAYLAYCTPGS 420
Query: 421 DGQAATLKFQAGKHNYELDFKAFVQKNLVYGTTKKVCRRPKYVSPQDVTTMQTCNTKFPG 480
DGQAATLKFQAGKHNYELDFKAFVQKNLVYGTTKKVCRRPKYVSPQDVTTMQTCNTKFPG
Sbjct: 421 DGQAATLKFQAGKHNYELDFKAFVQKNLVYGTTKKVCRRPKYVSPQDVTTMQTCNTKFPG 480
Query: 481 PKSIPDYWDSSALPDPGFQKITLSSSSEEYQKVWNLFNRTLPFYFVQKIERVQNLALWEV 540
PKSIPDYWDSSALPDPGFQKITLSSSSEEYQKVWNLFNRTLPFYFVQKIERVQNLALWEV
Sbjct: 481 PKSIPDYWDSSALPDPGFQKITLSSSSEEYQKVWNLFNRTLPFYFVQKIERVQNLALWEV 540
Query: 541 YQWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSYFARD 600
YQWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSYFARD
Sbjct: 541 YQWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSYFARD 600
Query: 601 AAYSHHYSKSDTQTHTMFLARVLVGEFVRGNASFVRPPAKEGWSNAFYDSCVNSVSDPSI 660
AAYSHHYSKSDTQTHTMFLARVLVGEFVRGNASFVRPPAKEGWSNAFYDSCVNSVSDPSI
Sbjct: 601 AAYSHHYSKSDTQTHTMFLARVLVGEFVRGNASFVRPPAKEGWSNAFYDSCVNSVSDPSI 660
Query: 661 FVIFEKHQVYPEYVIQYTTSSKPSVTPSILLALGSLFSSRQ 701
FVIFEKHQVYPEYVIQYTTSSKPSVTPSILLALGSLFSSRQ
Sbjct: 661 FVIFEKHQVYPEYVIQYTTSSKPSVTPSILLALGSLFSSRQ 701
>gi|27477136 zinc finger antiviral protein isoform 1 [Homo sapiens]
Length = 902
Score = 292 bits (748), Expect = 6e-79
Identities = 170/438 (38%), Positives = 239/438 (54%), Gaps = 50/438 (11%)
Query: 257 DSSGSVSPNTLSQ---EEGDQICLYHIRKSCSFQDKCHRVHFHLPYRWQFLDRGKWEDLD 313
DS V+ T S+ + ++ICL H+ K C C +VHFHLPYRWQ L W D +
Sbjct: 491 DSLSDVTSTTSSRVDDHDSEEICLDHLCKGCPLNGSCSKVHFHLPYRWQMLIGKTWTDFE 550
Query: 314 NMELIEEAYCNPKIERILCSESASTFHSHCLNFNAMTYGATQARRLSTASSVTKPPHFIL 373
+ME IE+ YCNP I LCS S+ +NF M+ + RRLST SSVTKP + +
Sbjct: 551 HMETIEKGYCNPGIH--LCSVG-----SYTINFRVMSCDSFPIRRLSTPSSVTKPANSVF 603
Query: 374 TTDWIWYWSDEFGSWQEYGRQGTVHPVTTVSSSDVEKAYLAYCTPGSDGQAATLKFQAGK 433
TT WIWYW +E G+W +YG + + V SS +E Y + C G + FQAG
Sbjct: 604 TTKWIWYWKNESGTWIQYGEEKDKRKNSNVDSSYLESLYQS-CPRG------VVPFQAGS 656
Query: 434 HNYELDFKAFVQKNLVYGTTKKVCRRPKYVSPQDVTTMQTCNTKFPGPKSIPDYWDSSAL 493
NYEL F+ +Q N+ T K V RRP +V V M+ GP P S +L
Sbjct: 657 RNYELSFQGMIQTNIASKTQKDVIRRPTFVPQWYVQQMKR------GPDHQPAKTSSVSL 710
Query: 494 -----PDPGF-----QKITLSSSSE---EYQKVWNLFNRTLPFYFVQKIERVQNLALWEV 540
P F +K LS EY +V F ++ + ++KI++++N L +
Sbjct: 711 TATFRPQEDFCFLSSKKYKLSEIHHLHPEYVRVSEHFKASMKNFKIEKIKKIENSELLDK 770
Query: 541 YQWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSYFARD 600
+ W+K QM+++ + LF+ TS +V++IC NFD + H YGKG YFA+D
Sbjct: 771 FTWKKSQMKEEG-------KLLFYATSRAYVESICSNNFDSFLHETHENKYGKGIYFAKD 823
Query: 601 AAYSHHYSKSDTQTHTMFLARVLVGEFVRGNASFVRPPAKEGWSNAFYDSCVNSVSDPSI 660
A YSH D + MF+A+VLVG+F GN ++ PP + +DSCV++ S+PS+
Sbjct: 824 AIYSHKNCPYDAKNVVMFVAQVLVGKFTEGNITYTSPPPQ-------FDSCVDTRSNPSV 876
Query: 661 FVIFEKHQVYPEYVIQYT 678
FVIF+K QVYP+YVI+YT
Sbjct: 877 FVIFQKDQVYPQYVIEYT 894
Score = 136 bits (343), Expect = 6e-32
Identities = 84/238 (35%), Positives = 128/238 (53%), Gaps = 14/238 (5%)
Query: 1 MAQAGVVGEVTQVLCAAGGALELPELRRRLRMGLSADALERLLRQRG--RFVVAVRAGGA 58
MA V +T++LCA GG + L L + + LS L +L+ G RFVV G A
Sbjct: 1 MADPEVCCFITKILCAHGGRMALDALLQEI--ALSEPQLCEVLQVAGPDRFVVLETGGEA 58
Query: 59 AAAPERVVLAASPLRLCRAHQGSKPGCVGLCAQLHLCRFMVYGACKFLRAGKN-CRNSHS 117
R V+A + R+CR +P C LHLC+ + G C + ++ +N C+ SH
Sbjct: 59 GIT--RSVVATTRARVCRRKYCQRP-----CDNLHLCKLNLLGRCNYSQSERNLCKYSHE 111
Query: 118 LTTEHNLSVLRTHGVDHLSYNELCQLLFQNDPWLLPEICQHYNKGDGPHGSCAFQKQCIK 177
+ +E N VL+ H + L+ EL LL Q+DP+ +PEIC+ Y KG+G C Q C +
Sbjct: 112 VLSEENFKVLKNHELSGLNKEELAVLLLQSDPFFMPEICKSY-KGEGRQQICNQQPPCSR 170
Query: 178 LHICQYFLQGECKFGTSCKRSHDFSNSENLEKLEKLGMSSDLVSRLPTIYRNAHDIKN 235
LHIC +F +G C+F +C RSH+ + + L + + G++ D+V + I + H KN
Sbjct: 171 LHICDHFTRGNCRF-PNCLRSHNLMDRKVLAIMREHGLNPDVVQNIQDICNSKHMQKN 227
>gi|194328777 poly (ADP-ribose) polymerase family, member 11 [Homo
sapiens]
Length = 338
Score = 221 bits (562), Expect = 2e-57
Identities = 118/323 (36%), Positives = 183/323 (56%), Gaps = 37/323 (11%)
Query: 375 TDWIWYWSDEFGSWQEYGRQGTVHPVTTVSSSDVEKAYLAYCTPGSDGQAATLKFQAGKH 434
T W W++ E G W + Q + +VSS D+EK++ ++ F K
Sbjct: 32 TQWGWFYLAECGKWHMF--QPDTNSQCSVSSEDIEKSF-------KTNPCGSISFTTSKF 82
Query: 435 NYELDFKAFVQKNLVYGTTKKVCRRPKYVSPQDVTTMQTCNTKFPGPKSIPDYWDSSALP 494
+Y++DF Q NL G + + R P +S N P +P +W++
Sbjct: 83 SYKIDFAEMKQMNLTTGKQRLIKRAPFSISAFSYICE---NEAIP----MPPHWENVNTQ 135
Query: 495 DPGFQKITLSSSSEEYQKVWNLFNRTLPFYFVQKIERVQNLALWEVYQWQKGQMQKQNGG 554
P +Q I L + + EY +V NLF +T+ +++I+R+QNL LWE + +K Q++K+ G
Sbjct: 136 VP-YQLIPLHNQTHEYNEVANLFGKTMDRNRIKRIQRIQNLDLWEFFCRKKAQLKKKRGV 194
Query: 555 KAVDERQLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSYFARDAAYSHHYSKSDT-- 612
++E+ LFHGTS+ FV+AIC NFDWR+ G+HG +GKG+YFARDAAYS + K D
Sbjct: 195 PQINEQMLFHGTSSEFVEAICIHNFDWRINGIHGAVFGKGTYFARDAAYSSRFCKDDIKH 254
Query: 613 ----QTH--------------TMFLARVLVGEFVRGNASFVRPPAKEGWSNAFYDSCVNS 654
Q H +MFLARVL+G+++ G++ ++RPP+K+G YDSCV+
Sbjct: 255 GNTFQIHGVSLQQRHLFRTYKSMFLARVLIGDYINGDSKYMRPPSKDGSYVNLYDSCVDD 314
Query: 655 VSDPSIFVIFEKHQVYPEYVIQY 677
+P IFV+F+ +Q+YPEY+I +
Sbjct: 315 TWNPKIFVVFDANQIYPEYLIDF 337
>gi|38524594 TCDD-inducible poly(ADP-ribose) polymerase [Homo
sapiens]
Length = 657
Score = 202 bits (513), Expect = 1e-51
Identities = 144/446 (32%), Positives = 219/446 (49%), Gaps = 70/446 (15%)
Query: 269 QEEGDQICLYHIRKSCSFQDKCHRVHFHLPYRWQF--LDRGKWEDL--DNMELIEEAYCN 324
QE G +IC+ ++ +C + C + H LPY WQ KW+ + D+ E +E YCN
Sbjct: 236 QENGIEICMDFLQGTCIYGRDCLKHHTVLPYHWQIKRTTTQKWQSVFNDSQEHLERFYCN 295
Query: 325 PKIERILCSESASTFHSHCLNFNAMTYGAT----QARRLSTASSVTKPPHFILTTDWIWY 380
P+ +R+ F + + NAM T Q RRLST S + I T W ++
Sbjct: 296 PENDRMRMKYGGQEFWA---DLNAMNVYETTEFDQLRRLSTPPSSNV--NSIYHTVWKFF 350
Query: 381 WSDEFGSWQEYGRQGTVHPVTTVSSSDVEKAYLAYCTPGSDGQAATLKFQAGKHNYELDF 440
D FG W+EY + + + +S +++ ++F ++Y L
Sbjct: 351 CRDHFG-WREYP-ESVIRLIEEANSRGLKE----------------VRFMMWNNHYILHN 392
Query: 441 KAFVQKNLVYGTTKKVCRRPKYVS--------------------PQDVTTMQT--CNTKF 478
F +++ RRP + S P + T+ C
Sbjct: 393 SFF---------RREIKRRPLFRSCFILLPYLQTLGGVPTQAPPPLEATSSSQIICPDGV 443
Query: 479 PGPKSIPDYWDSSALPDPGFQKITLSSSSEEYQKVWNLFNRTLPF--YFVQKIERVQNLA 536
P+ W P F ++ +S+ + Y+ ++NLF++T+P Y + +I RVQN
Sbjct: 444 TSANFYPETWVYMH-PSQDFIQVPVSAEDKSYRIIYNLFHKTVPEFKYRILQILRVQNQF 502
Query: 537 LWEVYQWQKGQMQKQNGGK--AVDERQLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKG 594
LWE Y+ +K M ++ G+ ++ER LFHGTS VD IC+ NFD RVCG H T +G+G
Sbjct: 503 LWEKYKRKKEYMNRKMFGRDRIINERHLFHGTSQDVVDGICKHNFDPRVCGKHATMFGQG 562
Query: 595 SYFARDAAYSHHYSKSDTQ-THTMFLARVLVGEFVRGNASFVRPPAKEGWS--NAFYDSC 651
SYFA+ A+YSH++SK ++ H MFLA+VL G + G+ RPP S + YDSC
Sbjct: 563 SYFAKKASYSHNFSKKSSKGVHFMFLAKVLTGRYTMGSHGMRRPPPVNPGSVTSDLYDSC 622
Query: 652 VNSVSDPSIFVIFEKHQVYPEYVIQY 677
V++ +P IFVIF Q YP +VIQY
Sbjct: 623 VDNFFEPQIFVIFNDDQSYPYFVIQY 648
>gi|27477138 zinc finger antiviral protein isoform 2 [Homo sapiens]
Length = 699
Score = 167 bits (422), Expect = 4e-41
Identities = 91/219 (41%), Positives = 120/219 (54%), Gaps = 17/219 (7%)
Query: 257 DSSGSVSPNTLSQ---EEGDQICLYHIRKSCSFQDKCHRVHFHLPYRWQFLDRGKWEDLD 313
DS V+ T S+ + ++ICL H+ K C C +VHFHLPYRWQ L W D +
Sbjct: 491 DSLSDVTSTTSSRVDDHDSEEICLDHLCKGCPLNGSCSKVHFHLPYRWQMLIGKTWTDFE 550
Query: 314 NMELIEEAYCNPKIERILCSESASTFHSHCLNFNAMTYGATQARRLSTASSVTKPPHFIL 373
+ME IE+ YCNP I LCS S+ +NF M+ + RRLST SSVTKP + +
Sbjct: 551 HMETIEKGYCNPGIH--LCSVG-----SYTINFRVMSCDSFPIRRLSTPSSVTKPANSVF 603
Query: 374 TTDWIWYWSDEFGSWQEYGRQGTVHPVTTVSSSDVEKAYLAYCTPGSDGQAATLKFQAGK 433
TT WIWYW +E G+W +YG + + V SS +E Y + C G + FQAG
Sbjct: 604 TTKWIWYWKNESGTWIQYGEEKDKRKNSNVDSSYLESLYQS-CPRG------VVPFQAGS 656
Query: 434 HNYELDFKAFVQKNLVYGTTKKVCRRPKYVSPQDVTTMQ 472
NYEL F+ +Q N+ T K V RRP +V V M+
Sbjct: 657 RNYELSFQGMIQTNIASKTQKDVIRRPTFVPQWYVQQMK 695
Score = 136 bits (343), Expect = 6e-32
Identities = 84/238 (35%), Positives = 128/238 (53%), Gaps = 14/238 (5%)
Query: 1 MAQAGVVGEVTQVLCAAGGALELPELRRRLRMGLSADALERLLRQRG--RFVVAVRAGGA 58
MA V +T++LCA GG + L L + + LS L +L+ G RFVV G A
Sbjct: 1 MADPEVCCFITKILCAHGGRMALDALLQEI--ALSEPQLCEVLQVAGPDRFVVLETGGEA 58
Query: 59 AAAPERVVLAASPLRLCRAHQGSKPGCVGLCAQLHLCRFMVYGACKFLRAGKN-CRNSHS 117
R V+A + R+CR +P C LHLC+ + G C + ++ +N C+ SH
Sbjct: 59 GIT--RSVVATTRARVCRRKYCQRP-----CDNLHLCKLNLLGRCNYSQSERNLCKYSHE 111
Query: 118 LTTEHNLSVLRTHGVDHLSYNELCQLLFQNDPWLLPEICQHYNKGDGPHGSCAFQKQCIK 177
+ +E N VL+ H + L+ EL LL Q+DP+ +PEIC+ Y KG+G C Q C +
Sbjct: 112 VLSEENFKVLKNHELSGLNKEELAVLLLQSDPFFMPEICKSY-KGEGRQQICNQQPPCSR 170
Query: 178 LHICQYFLQGECKFGTSCKRSHDFSNSENLEKLEKLGMSSDLVSRLPTIYRNAHDIKN 235
LHIC +F +G C+F +C RSH+ + + L + + G++ D+V + I + H KN
Sbjct: 171 LHICDHFTRGNCRF-PNCLRSHNLMDRKVLAIMREHGLNPDVVQNIQDICNSKHMQKN 227
>gi|22749259 poly (ADP-ribose) polymerase family, member 15 isoform
2 [Homo sapiens]
Length = 444
Score = 140 bits (352), Expect = 5e-33
Identities = 84/217 (38%), Positives = 116/217 (53%), Gaps = 15/217 (6%)
Query: 466 QDVTTMQTCNTKFPGPKSIPDYWDSSALPDPGFQKITLSSSSEEYQKVWNLFNRTLPFYF 525
Q +M TCN +P++W + F + L EY + + F RT Y
Sbjct: 238 QSTFSMTTCN--------LPEHWTD--MNHQLFCMVQLEPGQSEYNTIKDKFTRTCSSYA 287
Query: 526 VQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCG 585
++KIER+QN LW+ YQ +K QM +N K +ER LFHGT A V + Q F+ G
Sbjct: 288 IEKIERIQNAFLWQSYQVKKRQMDIKNDHKN-NERLLFHGTDADSVPYVNQHGFNRSCAG 346
Query: 586 VHGTSYGKGSYFARDAAYS--HHYSKSDTQTHT-MFLARVLVGEFVRGNASFVRPPAKEG 642
+ SYGKG+YFA DA+YS YSK D+ M++ RVL G F +G A V PP K
Sbjct: 347 KNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTPPPKNP 406
Query: 643 WS-NAFYDSCVNSVSDPSIFVIFEKHQVYPEYVIQYT 678
+ +DS N+ P +FV+F +Q YPEY+I +T
Sbjct: 407 HNPTDLFDSVTNNTRSPKLFVVFFDNQAYPEYLITFT 443
>gi|165377137 poly (ADP-ribose) polymerase family, member 15 isoform
1 [Homo sapiens]
Length = 678
Score = 140 bits (352), Expect = 5e-33
Identities = 84/217 (38%), Positives = 116/217 (53%), Gaps = 15/217 (6%)
Query: 466 QDVTTMQTCNTKFPGPKSIPDYWDSSALPDPGFQKITLSSSSEEYQKVWNLFNRTLPFYF 525
Q +M TCN +P++W + F + L EY + + F RT Y
Sbjct: 472 QSTFSMTTCN--------LPEHWTD--MNHQLFCMVQLEPGQSEYNTIKDKFTRTCSSYA 521
Query: 526 VQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCG 585
++KIER+QN LW+ YQ +K QM +N K +ER LFHGT A V + Q F+ G
Sbjct: 522 IEKIERIQNAFLWQSYQVKKRQMDIKNDHKN-NERLLFHGTDADSVPYVNQHGFNRSCAG 580
Query: 586 VHGTSYGKGSYFARDAAYS--HHYSKSDTQTHT-MFLARVLVGEFVRGNASFVRPPAKEG 642
+ SYGKG+YFA DA+YS YSK D+ M++ RVL G F +G A V PP K
Sbjct: 581 KNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTPPPKNP 640
Query: 643 WS-NAFYDSCVNSVSDPSIFVIFEKHQVYPEYVIQYT 678
+ +DS N+ P +FV+F +Q YPEY+I +T
Sbjct: 641 HNPTDLFDSVTNNTRSPKLFVVFFDNQAYPEYLITFT 677
>gi|18087829 zinc finger CCCH-type, antiviral 1-like [Homo sapiens]
Length = 300
Score = 138 bits (347), Expect = 2e-32
Identities = 92/248 (37%), Positives = 124/248 (50%), Gaps = 22/248 (8%)
Query: 1 MAQAGVVGEVTQVLCAAGGALELPELR-------RRLRMGLSADALERLLRQRGRF---- 49
MA+ V +T+VLCA GG + L +LR RLR L ER L Q
Sbjct: 1 MAEPTVCSFLTKVLCAHGGRMFLKDLRGHVELSEARLRDVLQRAGPERFLLQEVETQEGL 60
Query: 50 ------VVAVRAGGAAAAPERVVLAASPLRLCRAHQGSKPGCVGLCAQLHLCRFMVYGAC 103
A GG + RVV A S +RLC +Q G C QLH CR + G C
Sbjct: 61 GDAEAEAAAGAVGGGGTSAWRVV-AVSSVRLCARYQR---GECQACDQLHFCRRHMLGKC 116
Query: 104 KFLRAGKNCRNSHSLTTEHNLSVLRTHGVDHLSYNELCQLLFQNDPWLLPEICQHYNKGD 163
C SH + T N+ VL++HG+ L+ N+L LL QNDP LLPE+C YNKG+
Sbjct: 117 PNRDCWSTCTLSHDIHTPVNMQVLKSHGLFGLNENQLRILLLQNDPCLLPEVCLLYNKGE 176
Query: 164 GPHGSCAFQKQCIKLHICQYFLQGECKFGTSCKRSHDFSNSENLEKLEKLGMSSDLVSRL 223
+G C + +C K H+C+ F++GECK T CKRSH ++ +L+ L+ G++ V
Sbjct: 177 ALYGYCNLKDKCNKFHVCKSFVKGECKLQT-CKRSHQLIHAASLKLLQDQGLNIPSVVNF 235
Query: 224 PTIYRNAH 231
I H
Sbjct: 236 QIISTYKH 243
>gi|154813199 poly (ADP-ribose) polymerase family, member 14 [Homo
sapiens]
Length = 1801
Score = 128 bits (322), Expect = 2e-29
Identities = 75/198 (37%), Positives = 112/198 (56%), Gaps = 7/198 (3%)
Query: 484 IPDYWDSSALPDPGFQKITLSSSSEEYQKVWNLFNRTLPFYFVQKIERVQNLALWEVYQW 543
IP +W S + F + L S EY V + FN+T + ++KIER+QN LW YQ
Sbjct: 1605 IPAHW--SDMKQQNFCVVELLPSDPEYNTVASKFNQTCSHFRIEKIERIQNPDLWNSYQA 1662
Query: 544 QKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSYFARDAAY 603
+K M +NG + ++E+QLFHGT A V + + F+ G + +YGKG+YFA +A Y
Sbjct: 1663 KKKTMDAKNG-QTMNEKQLFHGTDAGSVPHVNRNGFNRSYAGKNAVAYGKGTYFAVNANY 1721
Query: 604 SHH--YSKSDTQTHT-MFLARVLVGEFVRGNASFVRPPAKEGWS-NAFYDSCVNSVSDPS 659
S + YS+ D ++ RVL G + GN S + PP+K + YD+ ++V PS
Sbjct: 1722 SANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKNPQNPTDLYDTVTDNVHHPS 1781
Query: 660 IFVIFEKHQVYPEYVIQY 677
+FV F +Q YPEY+I +
Sbjct: 1782 LFVAFYDYQAYPEYLITF 1799
>gi|157738665 poly (ADP-ribose) polymerase family, member 10 [Homo
sapiens]
Length = 1025
Score = 93.2 bits (230), Expect = 7e-19
Identities = 67/193 (34%), Positives = 101/193 (52%), Gaps = 11/193 (5%)
Query: 503 LSSSSEEYQKVWNLFNRTLPF----YFVQKIERVQNLALWEVYQWQKGQMQKQNGGKAVD 558
L+ ++ E+Q+V F TL V ++ERV + L + Y+ + ++ ++ + V
Sbjct: 823 LAENTGEFQEVVRAFYDTLDAARSSIRVVRVERVSHPLLQQQYELYRERLLQRCERRPV- 881
Query: 559 ERQLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSYFARDAAYS--HHYSKSDTQTH- 615
E+ L+HGT+A V IC F+ CG + T YGKG YFAR A+ S YS + H
Sbjct: 882 EQVLYHGTTAPAVPDICAHGFNRSFCGRNATVYGKGVYFARRASLSVQDRYSPPNADGHK 941
Query: 616 TMFLARVLVGEFVRGNASFVRPPAK-EGWSNAFYDSCVNSVSDPSIFVIFEKHQVYPEYV 674
+F+ARVL G++ +G PP + G YDS V+ + PSIFVIF Q P ++
Sbjct: 942 AVFVARVLTGDYGQGRRGLRAPPLRGPGHVLLRYDSAVDCICQPSIFVIFHDTQALPTHL 1001
Query: 675 IQYTTSSKPSVTP 687
I T P +P
Sbjct: 1002 I--TCEHVPRASP 1012
>gi|13376842 tankyrase, TRF1-interacting ankyrin-related ADP-ribose
polymerase 2 [Homo sapiens]
Length = 1166
Score = 62.4 bits (150), Expect = 1e-09
Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 24/177 (13%)
Query: 516 LFNRTLPFYFVQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAIC 575
+FNR Y + KI++V N LWE Y ++ ++ ++N A +ER LFHG+ FV+AI
Sbjct: 988 IFNR----YNILKIQKVCNKKLWERYTHRRKEVSEENHNHA-NERMLFHGSP--FVNAII 1040
Query: 576 QQNFDWRVCGVHGTSYGKGSYFARDAAYSHHY--------------SKSDTQTHTMFL-A 620
+ FD R + G +G G YFA +++ S+ Y +S H L
Sbjct: 1041 HKGFDERHAYI-GGMFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFC 1099
Query: 621 RVLVGEFVRGNASFVRPPAKEGWSNAFYDSCVNSVSDPSIFVIFEKHQVYPEYVIQY 677
RV +G+ ++ + G + VN ++ + +VI+ Q YPEY+I Y
Sbjct: 1100 RVTLGKSFLQFSAMKMAHSPPGHHSVTGRPSVNGLA-LAEYVIYRGEQAYPEYLITY 1155
>gi|226371716 poly (ADP-ribose) polymerase family, member 9 isoform
b [Homo sapiens]
Length = 819
Score = 62.0 bits (149), Expect = 2e-09
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 526 VQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCG 585
V K+E++ N L +Q +K M+++ + V R LF F + +C+ F
Sbjct: 633 VLKVEKIDNEVLMAAFQRKKKMMEEKLHRQPVSHR-LFQQVPYQFCNVVCRVGFQRMYST 691
Query: 586 VHGTSYGKGSYFARD----AAYSHHYSKSDTQTHTMFLARVLVGEFVRGNASFVRPPAKE 641
YG G YF ++ A + S +D + +F A VL G F +G+ + PP
Sbjct: 692 PCDPKYGAGIYFTKNLKNLAEKAKKISAADKLIY-VFEAEVLTGFFCQGHPLNIVPPPLS 750
Query: 642 GWSNAFYDSCVNSVSDPSIFVIFEKHQVYPEYV 674
+ +DS V++VS P FVIF Q P+Y+
Sbjct: 751 PGAIDGHDSVVDNVSSPETFVIFSGMQAIPQYL 783
>gi|226371714 poly (ADP-ribose) polymerase family, member 9 isoform
b [Homo sapiens]
Length = 819
Score = 62.0 bits (149), Expect = 2e-09
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 526 VQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCG 585
V K+E++ N L +Q +K M+++ + V R LF F + +C+ F
Sbjct: 633 VLKVEKIDNEVLMAAFQRKKKMMEEKLHRQPVSHR-LFQQVPYQFCNVVCRVGFQRMYST 691
Query: 586 VHGTSYGKGSYFARD----AAYSHHYSKSDTQTHTMFLARVLVGEFVRGNASFVRPPAKE 641
YG G YF ++ A + S +D + +F A VL G F +G+ + PP
Sbjct: 692 PCDPKYGAGIYFTKNLKNLAEKAKKISAADKLIY-VFEAEVLTGFFCQGHPLNIVPPPLS 750
Query: 642 GWSNAFYDSCVNSVSDPSIFVIFEKHQVYPEYV 674
+ +DS V++VS P FVIF Q P+Y+
Sbjct: 751 PGAIDGHDSVVDNVSSPETFVIFSGMQAIPQYL 783
>gi|226371712 poly (ADP-ribose) polymerase family, member 9 isoform
b [Homo sapiens]
Length = 819
Score = 62.0 bits (149), Expect = 2e-09
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 526 VQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCG 585
V K+E++ N L +Q +K M+++ + V R LF F + +C+ F
Sbjct: 633 VLKVEKIDNEVLMAAFQRKKKMMEEKLHRQPVSHR-LFQQVPYQFCNVVCRVGFQRMYST 691
Query: 586 VHGTSYGKGSYFARD----AAYSHHYSKSDTQTHTMFLARVLVGEFVRGNASFVRPPAKE 641
YG G YF ++ A + S +D + +F A VL G F +G+ + PP
Sbjct: 692 PCDPKYGAGIYFTKNLKNLAEKAKKISAADKLIY-VFEAEVLTGFFCQGHPLNIVPPPLS 750
Query: 642 GWSNAFYDSCVNSVSDPSIFVIFEKHQVYPEYV 674
+ +DS V++VS P FVIF Q P+Y+
Sbjct: 751 PGAIDGHDSVVDNVSSPETFVIFSGMQAIPQYL 783
>gi|226371710 poly (ADP-ribose) polymerase family, member 9 isoform
a [Homo sapiens]
Length = 854
Score = 62.0 bits (149), Expect = 2e-09
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 526 VQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCG 585
V K+E++ N L +Q +K M+++ + V R LF F + +C+ F
Sbjct: 668 VLKVEKIDNEVLMAAFQRKKKMMEEKLHRQPVSHR-LFQQVPYQFCNVVCRVGFQRMYST 726
Query: 586 VHGTSYGKGSYFARD----AAYSHHYSKSDTQTHTMFLARVLVGEFVRGNASFVRPPAKE 641
YG G YF ++ A + S +D + +F A VL G F +G+ + PP
Sbjct: 727 PCDPKYGAGIYFTKNLKNLAEKAKKISAADKLIY-VFEAEVLTGFFCQGHPLNIVPPPLS 785
Query: 642 GWSNAFYDSCVNSVSDPSIFVIFEKHQVYPEYV 674
+ +DS V++VS P FVIF Q P+Y+
Sbjct: 786 PGAIDGHDSVVDNVSSPETFVIFSGMQAIPQYL 818
>gi|226371706 poly (ADP-ribose) polymerase family, member 9 isoform
a [Homo sapiens]
Length = 854
Score = 62.0 bits (149), Expect = 2e-09
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 526 VQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCG 585
V K+E++ N L +Q +K M+++ + V R LF F + +C+ F
Sbjct: 668 VLKVEKIDNEVLMAAFQRKKKMMEEKLHRQPVSHR-LFQQVPYQFCNVVCRVGFQRMYST 726
Query: 586 VHGTSYGKGSYFARD----AAYSHHYSKSDTQTHTMFLARVLVGEFVRGNASFVRPPAKE 641
YG G YF ++ A + S +D + +F A VL G F +G+ + PP
Sbjct: 727 PCDPKYGAGIYFTKNLKNLAEKAKKISAADKLIY-VFEAEVLTGFFCQGHPLNIVPPPLS 785
Query: 642 GWSNAFYDSCVNSVSDPSIFVIFEKHQVYPEYV 674
+ +DS V++VS P FVIF Q P+Y+
Sbjct: 786 PGAIDGHDSVVDNVSSPETFVIFSGMQAIPQYL 818
>gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribose
polymerase [Homo sapiens]
Length = 1327
Score = 55.1 bits (131), Expect = 2e-07
Identities = 50/177 (28%), Positives = 83/177 (46%), Gaps = 24/177 (13%)
Query: 516 LFNRTLPFYFVQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAIC 575
+FNR Y V +I++V N L E + ++ ++ ++N +ER LFHG+ F++AI
Sbjct: 1141 IFNR----YNVIRIQKVVNKKLRERFCHRQKEVSEENHNHH-NERMLFHGSP--FINAII 1193
Query: 576 QQNFDWRVCGVHGTSYGKGSYFARDAAYSHHY-----SKSDTQTHT----------MFLA 620
+ FD R + G +G G YFA +++ S+ Y + TH M
Sbjct: 1194 HKGFDERHAYIGGM-FGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFC 1252
Query: 621 RVLVGEFVRGNASFVRPPAKEGWSNAFYDSCVNSVSDPSIFVIFEKHQVYPEYVIQY 677
RV +G+ ++ A G + VN ++ +VI+ Q YPEY+I Y
Sbjct: 1253 RVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSVNGLAYAE-YVIYRGEQAYPEYLITY 1308
>gi|193788659 cleavage and polyadenylation specific factor 4-like
[Homo sapiens]
Length = 179
Score = 43.1 bits (100), Expect = 9e-04
Identities = 38/114 (33%), Positives = 49/114 (42%), Gaps = 19/114 (16%)
Query: 94 LCRFMVYGACKFLRAGKNC-----RNSHSLTTEHNLSVLRTHGVDHLSYNELCQLLFQND 148
+C F G C+ GK C R + +H L L G DH C+ L Q D
Sbjct: 40 VCNFFTKGLCE---KGKLCPFRHDRGEKMVVCKHWLRGLCKKG-DH------CKFLHQYD 89
Query: 149 PWLLPEICQHYNK-GDGPHGSCAFQ--KQCIKLHICQYFLQGECKFGTSCKRSH 199
+PE C Y+K GD + C+F K K C ++ QG CK G CK H
Sbjct: 90 LTRMPE-CYFYSKFGDCSNKECSFLHVKPAFKSQDCPWYDQGFCKDGPLCKYRH 142
Score = 32.7 bits (73), Expect = 1.2
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 21/100 (21%)
Query: 155 ICQHYNKGDGPHGS-CAFQK-QCIKLHICQYFLQGECKFGTSCKRSHDFSNSENLEKLEK 212
+C + KG G C F+ + K+ +C+++L+G CK G CK H +
Sbjct: 40 VCNFFTKGLCEKGKLCPFRHDRGEKMVVCKHWLRGLCKKGDHCKFLHQYD---------- 89
Query: 213 LGMSSDLVSRLPT--IYRNAHDIKNKSSAPSRVPPLFVPQ 250
++R+P Y D NK + V P F Q
Sbjct: 90 -------LTRMPECYFYSKFGDCSNKECSFLHVKPAFKSQ 122
>gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens]
Length = 329
Score = 37.7 bits (86), Expect = 0.037
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 52 AVRAGGAAAAPERVVLAASPLRLCRAHQGSKPGCVGLCAQLHLCRFMVYGACKFLRAGKN 111
A A AAA+P + +P G G G + CR+ ++G CK G N
Sbjct: 18 AAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVTCRYFMHGVCK---EGDN 74
Query: 112 CRNSHSLTTEHNLSVLRTHGVDHLSYNELCQ 142
CR SH L+ V + + Y + C+
Sbjct: 75 CRYSHDLSDSPYSVVCKYFQRGYCIYGDRCR 105
Score = 37.0 bits (84), Expect = 0.062
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 162 GDGPHGSCAFQKQCIKLHICQYFLQGECKFGTSCKRSHDFSNS 204
G G GS K C+YF+ G CK G +C+ SHD S+S
Sbjct: 42 GGGGGGSDGSGGGWTKQVTCRYFMHGVCKEGDNCRYSHDLSDS 84
>gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens]
Length = 482
Score = 37.7 bits (86), Expect = 0.037
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 52 AVRAGGAAAAPERVVLAASPLRLCRAHQGSKPGCVGLCAQLHLCRFMVYGACKFLRAGKN 111
A A AAA+P + +P G G G + CR+ ++G CK G N
Sbjct: 18 AAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVTCRYFMHGVCK---EGDN 74
Query: 112 CRNSHSLTTEHNLSVLRTHGVDHLSYNELCQ 142
CR SH L+ V + + Y + C+
Sbjct: 75 CRYSHDLSDSPYSVVCKYFQRGYCIYGDRCR 105
Score = 37.0 bits (84), Expect = 0.062
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 162 GDGPHGSCAFQKQCIKLHICQYFLQGECKFGTSCKRSHDFSNS 204
G G GS K C+YF+ G CK G +C+ SHD S+S
Sbjct: 42 GGGGGGSDGSGGGWTKQVTCRYFMHGVCKEGDNCRYSHDLSDS 84
>gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo
sapiens]
Length = 1386
Score = 37.7 bits (86), Expect = 0.037
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 178 LHICQYFLQGECKFGTSCKRSHDFSNSENLEKLEK 212
L IC+++L+G CKFG+ C+ H+ ++ + ++E+
Sbjct: 302 LEICKFYLKGNCKFGSKCRFKHEVPPNQIVGRIER 336
>gi|5032243 makorin ring finger protein 3 [Homo sapiens]
Length = 507
Score = 36.2 bits (82), Expect = 0.11
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 180 ICQYFLQGECKFGTSCKRSHDFS 202
IC+Y++ G+CK G +C+ SHD S
Sbjct: 100 ICRYYIHGQCKEGENCRYSHDLS 122
Score = 32.0 bits (71), Expect = 2.0
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 87 GLCAQLHLCRFMVYGACKFLRAGKNCRNSHSLT 119
G+ + +CR+ ++G CK G+NCR SH L+
Sbjct: 93 GIWTKQIICRYYIHGQCK---EGENCRYSHDLS 122
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 36.2 bits (82), Expect = 0.11
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 155 ICQHYNKGDGPHGSCAFQKQCI--KLHICQYFLQGECKFGTSCKRSH 199
+C ++ KG + +C + + K +C FL+G C G CK+ H
Sbjct: 728 VCSYFLKGICSNSNCPYSHVYVSRKAEVCSDFLKGYCPLGAKCKKKH 774
>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
sapiens]
Length = 1189
Score = 36.2 bits (82), Expect = 0.11
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 154 EICQHYNKGDGPHGSCAFQKQCIKLHI---CQYFLQG-ECKFGTSCKRSHDFSNSENLEK 209
EIC+ Y +G C + CI +H C+++ G +C G +CK SHD E +
Sbjct: 305 EICKFYLQG-----YCTKGENCIYMHNEFPCKFYHSGAKCYQGDNCKFSHDDLTKETKKL 359
Query: 210 LEK-LGMSSDLVSRLPTIYRNAHDIKNKSSAPSRVPP 245
L+K L +L++ R +++ + P PP
Sbjct: 360 LDKVLNTDEELINE---DERELEELRKRGITPLPKPP 393
Score = 32.3 bits (72), Expect = 1.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 180 ICQYFLQGECKFGTSCKRSHD 200
IC+YFL+G C G CK HD
Sbjct: 277 ICKYFLEGRCIKGDQCKFDHD 297
>gi|125987603 cleavage and polyadenylation specific factor 4, 30kDa
isoform 2 [Homo sapiens]
Length = 244
Score = 35.0 bits (79), Expect = 0.24
Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 29/119 (24%)
Query: 94 LCRFMVYGACKFLRAGKNCRNSH-----SLTTEHNLSVLRTHGVDHLSYNELCQLLFQND 148
+C F + AC G C H ++ +H L L G + C+ L + D
Sbjct: 40 VCEFFLKAACG---KGGMCPFRHISGEKTVVCKHWLRGLCKKG-------DQCEFLHEYD 89
Query: 149 PWLLPEICQHYNKGDGPHGSCAFQKQCIKLHI--------CQYFLQGECKFGTSCKRSH 199
+PE C Y+K G C+ K+C LHI C ++ +G CK G C+ H
Sbjct: 90 MTKMPE-CYFYSK----FGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRH 142
Score = 30.4 bits (67), Expect = 5.8
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 155 ICQHYNKGD-GPHGSCAFQK-QCIKLHICQYFLQGECKFGTSCKRSHDF 201
+C+ + K G G C F+ K +C+++L+G CK G C+ H++
Sbjct: 40 VCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEY 88
Score = 29.6 bits (65), Expect = 9.9
Identities = 31/120 (25%), Positives = 43/120 (35%), Gaps = 13/120 (10%)
Query: 87 GLCAQLHL-------CRFMVYGACKFLRAGKNCRNSHSLTTEHNLSVLRTHGVDHLSYNE 139
G+C H+ C+ + G CK G C H S N+
Sbjct: 53 GMCPFRHISGEKTVVCKHWLRGLCK---KGDQCEFLHEYDMTKMPECYFYSKFGECS-NK 108
Query: 140 LCQLLFQNDPWLLPEICQHYNKGDGPHGSCAFQKQCIKLHICQYFLQGECKFGTSCKRSH 199
C L DP + C Y++G HG + ++ IC +L G C G SCK H
Sbjct: 109 ECPFL-HIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRV-ICVNYLVGFCPEGPSCKFMH 166
>gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa
isoform 1 [Homo sapiens]
Length = 269
Score = 35.0 bits (79), Expect = 0.24
Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 29/119 (24%)
Query: 94 LCRFMVYGACKFLRAGKNCRNSH-----SLTTEHNLSVLRTHGVDHLSYNELCQLLFQND 148
+C F + AC G C H ++ +H L L G + C+ L + D
Sbjct: 40 VCEFFLKAACG---KGGMCPFRHISGEKTVVCKHWLRGLCKKG-------DQCEFLHEYD 89
Query: 149 PWLLPEICQHYNKGDGPHGSCAFQKQCIKLHI--------CQYFLQGECKFGTSCKRSH 199
+PE C Y+K G C+ K+C LHI C ++ +G CK G C+ H
Sbjct: 90 MTKMPE-CYFYSK----FGECS-NKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRH 142
Score = 30.4 bits (67), Expect = 5.8
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 155 ICQHYNKGD-GPHGSCAFQK-QCIKLHICQYFLQGECKFGTSCKRSHDF 201
+C+ + K G G C F+ K +C+++L+G CK G C+ H++
Sbjct: 40 VCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGDQCEFLHEY 88
Score = 30.4 bits (67), Expect = 5.8
Identities = 46/221 (20%), Positives = 80/221 (36%), Gaps = 24/221 (10%)
Query: 87 GLCAQLHL-------CRFMVYGACKFLRAGKNCRNSHSLTTEHNLSVLRTHGVDHLSYNE 139
G+C H+ C+ + G CK G C H S N+
Sbjct: 53 GMCPFRHISGEKTVVCKHWLRGLCK---KGDQCEFLHEYDMTKMPECYFYSKFGECS-NK 108
Query: 140 LCQLLFQNDPWLLPEICQHYNKGDGPHGSCAFQKQCIKLHICQYFLQGECKFGTSCKRSH 199
C L DP + C Y++G HG + ++ IC +L G C G SCK H
Sbjct: 109 ECPFL-HIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRV-ICVNYLVGFCPEGPSCKFMH 166
Query: 200 DF----SNSENLEKLEKLGMSSDLVSRLPTIYRNAH--DIKNKSSAPSRVPPLFVPQGTS 253
+ L + S P + R++ + +++S+P++ V
Sbjct: 167 PRFELPMGTTEQPPLPQQTQPPAKQSNNPPLQRSSSLIQLTSQNSSPNQQRTPQVIGVMQ 226
Query: 254 ERKDSSGSVSPNTLSQEEGDQICLYHIRKSCSFQDKCHRVH 294
+ S+G+ P L +Q+ Y + + ++C + H
Sbjct: 227 SQNSSAGNRGPRPL-----EQVTCYKCGEKGHYANRCTKGH 262
>gi|32880199 makorin ring finger protein 2 [Homo sapiens]
Length = 416
Score = 35.0 bits (79), Expect = 0.24
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 9/43 (20%)
Query: 166 HGSCAFQKQCIKLH---------ICQYFLQGECKFGTSCKRSH 199
HG C QC+ H IC+Y+ +G C +GT C+ H
Sbjct: 13 HGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDH 55
Score = 34.7 bits (78), Expect = 0.31
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 181 CQYFLQGECKFGTSCKRSHDFSNSE 205
C+YF+ G C+ G+ C SHD +NS+
Sbjct: 8 CRYFMHGVCREGSQCLFSHDLANSK 32
>gi|6679074 nucleoporin like 2 [Homo sapiens]
Length = 423
Score = 34.3 bits (77), Expect = 0.40
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 180 ICQYFLQGECKFGTSCKRSH 199
ICQ+FLQG C+FG C H
Sbjct: 3 ICQFFLQGRCRFGDRCWNEH 22
>gi|118150660 erythropoietin 4 immediate early response [Homo
sapiens]
Length = 426
Score = 34.3 bits (77), Expect = 0.40
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 180 ICQYFLQGECKFGTSCKRSHDFSNSENLEK 209
+C +F QG+C G CK SHD + EK
Sbjct: 104 VCAFFKQGQCTKGDKCKFSHDLTLERKCEK 133
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 32.7 bits (73), Expect = 1.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 180 ICQYFLQGECKFGTSCKRSHD 200
IC+YF++G C +G C SHD
Sbjct: 395 ICKYFVEGRCTWGDHCNFSHD 415
Score = 30.8 bits (68), Expect = 4.5
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 154 EICQHYNKGDGPHGSCAFQKQCIKLH---ICQ-YFLQGECKFGTSCKRSHDFSNSENLEK 209
E+C+ Y G CA + C +H C+ Y G C G C SHD E E
Sbjct: 423 ELCKFYITG-----FCARAENCPYMHGDFPCKLYHTTGNCINGDDCMFSHDPLTEETREL 477
Query: 210 LEKLGMSSDLVSRLPTIYRNAHDIKNKSSAPSRVPP 245
L+K M +D + ++K + P PP
Sbjct: 478 LDK--MLADDAEAGAEDEKEVEELKKQGINPLPKPP 511
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,404,501
Number of Sequences: 37866
Number of extensions: 1373595
Number of successful extensions: 3266
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3118
Number of HSP's gapped (non-prelim): 87
length of query: 701
length of database: 18,247,518
effective HSP length: 109
effective length of query: 592
effective length of database: 14,120,124
effective search space: 8359113408
effective search space used: 8359113408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.