Guide to the Human Genome
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Name: ZC3HAV1L Sequence: fasta or formatted (300aa) NCBI GI: 18087829
Description:

zinc finger CCCH-type, antiviral 1-like

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         25           3
 C cysteine            6.0         18           1
 D aspartate           3.3         10           1
 E glutamate           6.3         19           1
 F phenylalanine       2.7          8           1
 G glycine             7.7         23           4
 H histidine           4.7         14           1
 I isoleucine          2.3          7           2
 K lysine              6.7         20           2
 L leucine            12.3         37           3
 M methionine          1.7          5           1
 N asparagine          4.0         12           1
 P proline             4.0         12           1
 Q glutamine           5.7         17           1
 R arginine            5.0         15           2
 S serine              6.7         20           2
 T threonine           3.7         11           1
 V valine              6.7         20           2
 W tryptophan          0.7          2           1
 Y tyrosine            1.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger CCCH-type, antiviral 1-like 
ZC3HAV1               0.258   zinc finger antiviral protein isoform 1 
ZC3HAV1               0.258   zinc finger antiviral protein isoform 2 
PARP12                0.189   poly ADP-ribose polymerase 12 
ZC3H3                 0.018   zinc finger CCCH-type containing 3 
MBNL1                 0.015   muscleblind-like 1 isoform e 
MBNL1                 0.015   muscleblind-like 1 isoform d 
INTS3                 0.012   integrator complex subunit 3 
CPSF4                 0.008   cleavage and polyadenylation specific factor 4, 30k...
CPSF4                 0.008   cleavage and polyadenylation specific factor 4, 30kDa...
KIF18A                0.008   kinesin family member 18A 
LOC100291807          0.008   PREDICTED: hypothetical protein XP_002345507 
LOC390561             0.007   PREDICTED: similar to hect domain and RLD 2 
MBNL2                 0.007   muscleblind-like 2 isoform 3 
MBNL2                 0.007   muscleblind-like 2 isoform 1 
MBNL1                 0.007   muscleblind-like 1 isoform g 
MBNL1                 0.007   muscleblind-like 1 isoform f 
MBNL1                 0.007   muscleblind-like 1 isoform c 
MBNL1                 0.007   muscleblind-like 1 isoform b 
MBNL1                 0.007   muscleblind-like 1 isoform a 
LOC728080             0.007   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.007   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.007   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.007   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC653720             0.007   PREDICTED: similar to Golgin subfamily A member 8-l...
RLF                   0.007   rearranged L-myc fusion 
KIAA1543              0.005   NEZHA isoform 2 
KIAA1543              0.005   NEZHA isoform 1 
MAGI2                 0.005   membrane associated guanylate kinase, WW and PDZ dom...
MBNL3                 0.005   muscleblind-like 3 isoform R 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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