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Search of human proteins with 12232401
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|12232401 SET and MYND domain containing 3 [Homo sapiens]
(369 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|12232401 SET and MYND domain containing 3 [Homo sapiens] 762 0.0
gi|38093643 SET and MYND domain containing 1 [Homo sapiens] 206 3e-53
gi|188035871 SET and MYND domain containing 2 [Homo sapiens] 191 7e-49
gi|156616308 SET and MYND domain containing 4 [Homo sapiens] 68 1e-11
gi|154689858 SMYD family member 5 [Homo sapiens] 62 6e-10
gi|19923997 zinc finger, MYND domain containing 19 [Homo sapiens] 46 5e-05
gi|50659084 suppressor of variegation 4-20 homolog 1 isoform 2 [... 40 0.003
gi|50659082 suppressor of variegation 4-20 homolog 1 isoform 1 [... 40 0.003
gi|28461129 ankyrin repeat and MYND domain containing 2 [Homo sa... 40 0.003
gi|67782303 zinc finger, MYND domain containing 17 [Homo sapiens] 40 0.003
gi|57529246 ubiquitin thioesterase 19 [Homo sapiens] 40 0.004
gi|38505161 tudor domain containing 1 [Homo sapiens] 39 0.007
gi|31543169 suppressor of variegation 4-20 homolog 2 [Homo sapiens] 39 0.010
gi|89353295 core-binding factor, runt domain, alpha subunit 2; t... 37 0.022
gi|74229008 core-binding factor, runt domain, alpha subunit 2; t... 37 0.022
gi|4826663 core-binding factor, runt domain, alpha subunit 2; tr... 37 0.022
gi|38016945 deformed epidermal autoregulatory factor 1 [Homo sap... 36 0.048
gi|239749940 PREDICTED: similar to deformed epidermal autoregula... 36 0.048
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 36 0.063
gi|45356743 SET domain-containing 8 [Homo sapiens] 35 0.11
gi|28329422 acute myelogenous leukemia 1 translocation 1 protein... 35 0.14
gi|28329419 acute myelogenous leukemia 1 translocation 1 protein... 35 0.14
gi|28329416 acute myelogenous leukemia 1 translocation 1 protein... 35 0.14
gi|4757916 acute myelogenous leukemia 1 translocation 1 protein ... 35 0.14
gi|110349788 absent, small, or homeotic 1-like [Homo sapiens] 35 0.14
gi|13489073 egl nine homolog 1 [Homo sapiens] 34 0.18
gi|37594444 zinc finger, MYND domain-containing 10 [Homo sapiens] 34 0.18
gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens] 34 0.24
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 34 0.24
gi|28872803 myeloid translocation gene on chromosome 16 isoform ... 34 0.24
>gi|12232401 SET and MYND domain containing 3 [Homo sapiens]
Length = 369
Score = 762 bits (1968), Expect = 0.0
Identities = 369/369 (100%), Positives = 369/369 (100%)
Query: 1 MRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSE 60
MRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSE
Sbjct: 1 MRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSE 60
Query: 61 SEKLYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVI 120
SEKLYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVI
Sbjct: 61 SEKLYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVI 120
Query: 121 CNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICY 180
CNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICY
Sbjct: 121 CNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICY 180
Query: 181 LDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAH 240
LDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAH
Sbjct: 181 LDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGDEQVWKEVQESLKKIEELKAH 240
Query: 241 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYR 300
WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYR
Sbjct: 241 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYR 300
Query: 301 IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE 360
IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE
Sbjct: 301 IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE 360
Query: 361 ECDANIRAS 369
ECDANIRAS
Sbjct: 361 ECDANIRAS 369
>gi|38093643 SET and MYND domain containing 1 [Homo sapiens]
Length = 490
Score = 206 bits (524), Expect = 3e-53
Identities = 123/392 (31%), Positives = 205/392 (52%), Gaps = 32/392 (8%)
Query: 2 RCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKL-MDGAPSE 60
RC QC+ A YC CQK AW +HK EC +K + P +++RL R+++++ +G
Sbjct: 64 RCGQCKFAHYCDRTCQKDAWLNHKNECSAIKRYG-KVPNENIRLAARIMWRVEREGTGLT 122
Query: 61 SEKLYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVI 120
L S DL++++ E++++ LR V TF + + Q S + F +
Sbjct: 123 EGCLVSVDDLQNHVEHFGEEEQKDLRVDVDTFLQYWPPQSQQFSMQY----ISHIFGVIN 178
Query: 121 CNSFTICNAE-MQEVGVGLYPSISLLNHSCDPNCSIVFN-GPH------------LLLRA 166
CN FT+ + +Q VGVG++P++ L+NH C PNC+++FN G H + LRA
Sbjct: 179 CNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRA 238
Query: 167 VRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTG------- 219
+ I GEELT+ Y+D L SEER++QL+ QY F+C C CQ + KD D+ G
Sbjct: 239 LGKISEGEELTVSYIDFLNVSEERKRQLKKQYYFDCTCEHCQKKLKD-DLFLGVKDNPKP 297
Query: 220 DEQVWKEV----QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCA 275
++V KE+ +++L+KI++ ++ + +V+ +C+ + D NIY L++L
Sbjct: 298 SQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNIYMLRMLSIV 357
Query: 276 MDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLR 335
+ L EEA FY R ++ Y + ++ G+ VM+ G H G +
Sbjct: 358 SEVLSYLQAFEEASFYARRMVDGYMKLYHPNNAQLGMAVMRAGLTNWHAGNIEVGHGMIC 417
Query: 336 LAFDIMRVTHGREHSLIEDLILLLEECDANIR 367
A+ I+ VTHG H + +DL + + + +R
Sbjct: 418 KAYAILLVTHGPSHPITKDLEAMRVQTEMELR 449
>gi|188035871 SET and MYND domain containing 2 [Homo sapiens]
Length = 433
Score = 191 bits (486), Expect = 7e-49
Identities = 115/367 (31%), Positives = 192/367 (52%), Gaps = 17/367 (4%)
Query: 2 RCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRY-PPDSVRLLGRVVFKL-MDGAPS 59
+C +C+ A YC+ +CQK+ WP HK EC + + P ++VRL R++ K + +
Sbjct: 64 KCGRCKQAFYCNVECQKEDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHPERT 123
Query: 60 ESEKLYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKV 119
SEKL + + ES+++KL +KK+ ++ + HF + + P L FA+V
Sbjct: 124 PSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFYSKHLG----FPDNDSLVVLFAQV 179
Query: 120 ICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTIC 179
CN FTI + E+ +G ++P ++L+NHSC PN + + G +RAV++I+ GEE+
Sbjct: 180 NCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTS 239
Query: 180 YLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADML--------TGDEQVWKEVQESL 231
Y+D+L +E+R +LRD Y F C+C C T+DKD + E + V+ +
Sbjct: 240 YIDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYAR 299
Query: 232 KKIEELK--AHWKW-EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEA 288
IEE + H+K ++L +C+ S D N+Y L ++ AM C+ + E A
Sbjct: 300 NVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGA 359
Query: 289 LFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 348
L YG + ++PY +P +K+G+L + K L+ A IM V HG++
Sbjct: 360 LQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKALKKAIAIMEVAHGKD 419
Query: 349 HSLIEDL 355
H I ++
Sbjct: 420 HPYISEI 426
>gi|156616308 SET and MYND domain containing 4 [Homo sapiens]
Length = 804
Score = 68.2 bits (165), Expect = 1e-11
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 126 ICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICY--LDM 183
+ ++ + G++P ISLLNHSC PN S+ F +RA + I G+E+ CY
Sbjct: 519 VTDSRQVRLATGIFPVISLLNHSCSPNTSVSFISTVATIRASQRIRKGQEILHCYGPHKS 578
Query: 184 LMTSEERRKQLRDQYCFECDCFRCQTQ 210
M ER+++LR QY F+C C CQT+
Sbjct: 579 RMGVAERQQKLRSQYFFDCACPACQTE 605
Score = 33.1 bits (74), Expect = 0.41
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 3 CSQCRVAKYCSAKCQKKAWP-DHKREC 28
C C AKYCS +C ++AW H+ EC
Sbjct: 309 CDGCSYAKYCSQECLQQAWELYHRTEC 335
>gi|154689858 SMYD family member 5 [Homo sapiens]
Length = 418
Score = 62.4 bits (150), Expect = 6e-10
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 101 QDASQLPPAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGP 160
QD QL D + F C G GL+ S NHSC PN F
Sbjct: 276 QDREQLDAFIDQLYKDIEAATGEFLNCE------GSGLFVLQSCCNHSCVPNAETSFPEN 329
Query: 161 HLLLR--AVRDIEVGEELTICYLDMLM---TSEERRKQLRDQYCFECDCFRCQTQDKDAD 215
+ LL A+ DI+ GEE+ I YLD + R K LR+ Y F C C +C + + +
Sbjct: 330 NFLLHVTALEDIKPGEEICISYLDCCQRERSRHSRHKILRENYLFVCSCPKCLAEADEPN 389
Query: 216 MLTGDEQVWKEVQESLKKIEEL 237
+ + +E+ +E +E + EL
Sbjct: 390 VTSEEEEEEEEEEEGEPEDAEL 411
>gi|19923997 zinc finger, MYND domain containing 19 [Homo sapiens]
Length = 227
Score = 46.2 bits (108), Expect = 5e-05
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 3 CSQCRVAKYCSAKCQKKAWPDHKRECK 29
C +C+VA+YC ++CQ+K WP HK+ C+
Sbjct: 187 CGRCQVARYCGSQCQQKDWPAHKKHCR 213
>gi|50659084 suppressor of variegation 4-20 homolog 1 isoform 2
[Homo sapiens]
Length = 393
Score = 40.4 bits (93), Expect = 0.003
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 143 SLLNHSCDPNCSIVFNG-PHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFE 201
+ +NH C PNC V G ++A+RDIE GEE++ Y D
Sbjct: 269 AFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFGENNE----------F 318
Query: 202 CDCFRCQTQDKDA 214
C+C+ C+ + A
Sbjct: 319 CECYTCERRGTGA 331
>gi|50659082 suppressor of variegation 4-20 homolog 1 isoform 1
[Homo sapiens]
Length = 885
Score = 40.4 bits (93), Expect = 0.003
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 143 SLLNHSCDPNCSIVFNG-PHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFE 201
+ +NH C PNC V G ++A+RDIE GEE++ Y D
Sbjct: 269 AFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFGENNE----------F 318
Query: 202 CDCFRCQTQDKDA 214
C+C+ C+ + A
Sbjct: 319 CECYTCERRGTGA 331
>gi|28461129 ankyrin repeat and MYND domain containing 2 [Homo
sapiens]
Length = 441
Score = 40.4 bits (93), Expect = 0.003
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 2 RCSQCRVAKYCSAKCQKKAWPDHKRECKCLK 32
RCS C++ YC CQK W HK+ CK LK
Sbjct: 331 RCSVCKMVIYCDQTCQKTHWFTHKKICKNLK 361
>gi|67782303 zinc finger, MYND domain containing 17 [Homo sapiens]
Length = 460
Score = 40.4 bits (93), Expect = 0.003
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 3 CSQCRVAKYCSAKCQKKAWPDHKRECKCLK 32
C +CR YC +CQK WP H+R C+ L+
Sbjct: 124 CKRCRNVYYCGPECQKSDWPAHRRVCQELR 153
>gi|57529246 ubiquitin thioesterase 19 [Homo sapiens]
Length = 1318
Score = 39.7 bits (91), Expect = 0.004
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 2 RCSQCRVAKYCSAKCQKKAWPDHKRECK 29
RC++C YC+ CQK WPDHK C+
Sbjct: 807 RCTRCYRVGYCNQLCQKTHWPDHKGLCR 834
>gi|38505161 tudor domain containing 1 [Homo sapiens]
Length = 1189
Score = 38.9 bits (89), Expect = 0.007
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1 MRCSQCRVAKYCSAKCQKKAWPDHKRECK 29
+RCSQC+ YCS CQ++ W H C+
Sbjct: 179 LRCSQCKQTYYCSTACQRRDWSAHSIVCR 207
>gi|31543169 suppressor of variegation 4-20 homolog 2 [Homo sapiens]
Length = 462
Score = 38.5 bits (88), Expect = 0.010
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 143 SLLNHSCDPNCSIV-FNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFE 201
+ +NH C PNC V +G ++ +RDIE G+E+T Y + +
Sbjct: 179 AFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFGEKNE----------H 228
Query: 202 CDCFRCQTQDKDA 214
C+C C+ + + A
Sbjct: 229 CECHTCERKGEGA 241
>gi|89353295 core-binding factor, runt domain, alpha subunit 2;
translocated to, 2 isoform MTGR1a [Homo sapiens]
Length = 575
Score = 37.4 bits (85), Expect = 0.022
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 3 CSQCRVAKYCSAKCQKKAWPDHKREC 28
CS C +A+YC + CQ K W H R C
Sbjct: 489 CSGCNIARYCGSFCQHKDWERHHRLC 514
>gi|74229008 core-binding factor, runt domain, alpha subunit 2;
translocated to, 2 isoform MTGR1c [Homo sapiens]
Length = 595
Score = 37.4 bits (85), Expect = 0.022
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 3 CSQCRVAKYCSAKCQKKAWPDHKREC 28
CS C +A+YC + CQ K W H R C
Sbjct: 509 CSGCNIARYCGSFCQHKDWERHHRLC 534
>gi|4826663 core-binding factor, runt domain, alpha subunit 2;
translocated to, 2 isoform MTGR1b [Homo sapiens]
Length = 604
Score = 37.4 bits (85), Expect = 0.022
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 3 CSQCRVAKYCSAKCQKKAWPDHKREC 28
CS C +A+YC + CQ K W H R C
Sbjct: 518 CSGCNIARYCGSFCQHKDWERHHRLC 543
>gi|38016945 deformed epidermal autoregulatory factor 1 [Homo
sapiens]
Length = 565
Score = 36.2 bits (82), Expect = 0.048
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 3 CSQCRVAKYCSAKCQKKAWPDHKREC 28
C+ C YCS CQ+K W DH+ C
Sbjct: 515 CTGCHKVNYCSTFCQRKDWKDHQHIC 540
>gi|239749940 PREDICTED: similar to deformed epidermal
autoregulatory factor 1 [Homo sapiens]
Length = 426
Score = 36.2 bits (82), Expect = 0.048
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 3 CSQCRVAKYCSAKCQKKAWPDHKREC 28
C+ C YCS CQ+K W DH+ C
Sbjct: 376 CTGCHKVNYCSTFCQRKDWKDHQHIC 401
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 35.8 bits (81), Expect = 0.063
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 145 LNHSCDPNC-SIVFN---GPHLLLRAVRDIEVGEELTICY 180
+NHSC+PNC S V N H+++ A+R I GEELT Y
Sbjct: 3905 INHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDY 3944
>gi|45356743 SET domain-containing 8 [Homo sapiens]
Length = 352
Score = 35.0 bits (79), Expect = 0.11
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 144 LLNHSCDPNCSIVFNG----PHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLR 195
L+NHS NC + PHL+L A RDI GEEL Y D S E L+
Sbjct: 296 LINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGDRSKASIEAHPWLK 351
>gi|28329422 acute myelogenous leukemia 1 translocation 1 protein
isoform MTG8c [Homo sapiens]
Length = 567
Score = 34.7 bits (78), Expect = 0.14
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 3 CSQCRVAKYCSAKCQKKAWPDHKREC 28
CS C A+YC + CQ K W H C
Sbjct: 489 CSGCNTARYCGSFCQHKDWEKHHHIC 514
>gi|28329419 acute myelogenous leukemia 1 translocation 1 protein
isoform MTG8c [Homo sapiens]
Length = 567
Score = 34.7 bits (78), Expect = 0.14
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 3 CSQCRVAKYCSAKCQKKAWPDHKREC 28
CS C A+YC + CQ K W H C
Sbjct: 489 CSGCNTARYCGSFCQHKDWEKHHHIC 514
>gi|28329416 acute myelogenous leukemia 1 translocation 1 protein
isoform MTG8b [Homo sapiens]
Length = 604
Score = 34.7 bits (78), Expect = 0.14
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 3 CSQCRVAKYCSAKCQKKAWPDHKREC 28
CS C A+YC + CQ K W H C
Sbjct: 526 CSGCNTARYCGSFCQHKDWEKHHHIC 551
>gi|4757916 acute myelogenous leukemia 1 translocation 1 protein
isoform MTG8a [Homo sapiens]
Length = 577
Score = 34.7 bits (78), Expect = 0.14
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 3 CSQCRVAKYCSAKCQKKAWPDHKREC 28
CS C A+YC + CQ K W H C
Sbjct: 499 CSGCNTARYCGSFCQHKDWEKHHHIC 524
>gi|110349788 absent, small, or homeotic 1-like [Homo sapiens]
Length = 2964
Score = 34.7 bits (78), Expect = 0.14
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 145 LNHSCDPNCSI---VFNGPHLL-LRAVRDIEVGEELTICY 180
+NHSCDPNC + NG + + L A++D+ G ELT Y
Sbjct: 2216 INHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDY 2255
>gi|13489073 egl nine homolog 1 [Homo sapiens]
Length = 426
Score = 34.3 bits (77), Expect = 0.18
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 1 MRCSQCRVAKYCSAKCQKKAWPDHKRECK 29
+RCS+CR + YC + Q++ W HK C+
Sbjct: 31 LRCSRCRSSFYCCKEHQRQDWKKHKLVCQ 59
>gi|37594444 zinc finger, MYND domain-containing 10 [Homo sapiens]
Length = 440
Score = 34.3 bits (77), Expect = 0.18
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 2 RCSQCRVAKYCSAKCQKKAWPDHKREC 28
RCS+C+ YC +CQ K W H + C
Sbjct: 404 RCSRCQNEWYCCRECQVKHWEKHGKTC 430
>gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens]
Length = 412
Score = 33.9 bits (76), Expect = 0.24
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 130 EMQEVGVGLYPSIS-LLNHSCDPNCSI--VF------NGPHLLLRAVRDIEVGEELTICY 180
++ V Y +IS +NHSCDPN + VF P + A R I GEELT Y
Sbjct: 306 DVYTVDAAYYGNISHFVNHSCDPNLQVYNVFIDNLDERLPRIAFFATRTIRAGEELTFDY 365
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 33.9 bits (76), Expect = 0.24
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 145 LNHSCDPNCSI----VFNGPHLLLRAVRDIEVGEELTICY 180
+NHSC+PNC V H+++ A+R I GEELT Y
Sbjct: 2651 INHSCEPNCFSRVIHVEGQKHIVIFALRRILRGEELTYDY 2690
>gi|28872803 myeloid translocation gene on chromosome 16 isoform
MTG16a [Homo sapiens]
Length = 653
Score = 33.9 bits (76), Expect = 0.24
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 3 CSQCRVAKYCSAKCQKKAWPDHKREC 28
CS C A+YC + CQ + W H C
Sbjct: 567 CSGCNAARYCGSFCQHRDWEKHHHVC 592
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.137 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,445,336
Number of Sequences: 37866
Number of extensions: 633598
Number of successful extensions: 2216
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2151
Number of HSP's gapped (non-prelim): 74
length of query: 369
length of database: 18,247,518
effective HSP length: 104
effective length of query: 265
effective length of database: 14,309,454
effective search space: 3792005310
effective search space used: 3792005310
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.