| Name: C5orf54 | Sequence: fasta or formatted (594aa) | NCBI GI: 28916698 | |
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Description: transposon-derived Buster3 transposase-like
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Referenced in: DNA Transposon and Retrovirus-related Sequences
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 6.4 38 2 C cysteine 2.2 13 1 D aspartate 6.1 36 3 E glutamate 6.9 41 2 F phenylalanine 7.7 46 2 G glycine 3.5 21 2 H histidine 3.5 21 2 I isoleucine 6.2 37 2 K lysine 6.9 41 2 L leucine 11.4 68 2 M methionine 2.5 15 1 N asparagine 4.0 24 1 P proline 3.4 20 1 Q glutamine 4.9 29 2 R arginine 4.0 24 1 S serine 7.1 42 2 T threonine 4.4 26 2 V valine 5.7 34 2 W tryptophan 1.0 6 1 Y tyrosine 2.0 12 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 transposon-derived Buster3 transposase-like ZBED5 0.274 zinc finger, BED-type containing 5 ZBED5 0.274 zinc finger, BED-type containing 5 SCAND3 0.254 SCAN domain containing 3 LOC285550 0.251 hypothetical protein LOC285550 ZMYM6 0.236 zinc finger protein 258 C7orf38 0.226 hypothetical protein LOC221786 GTF2IRD2 0.102 GTF2I repeat domain containing 2 GTF2IRD2B 0.102 GTF2I repeat domain containing 2B EPM2AIP1 0.065 EPM2A interacting protein 1 KIAA1586 0.015 hypothetical protein LOC57691 ZNF862 0.014 zinc finger protein 862 CXorf23 0.006 hypothetical protein LOC256643 KALRN 0.004 kalirin, RhoGEF kinase isoform 1 KALRN 0.004 kalirin, RhoGEF kinase isoform 2 MACF1 0.004 microfilament and actin filament cross-linker protei... MACF1 0.004 microfilament and actin filament cross-linker protei... GRIPAP1 0.004 GRIP1 associated protein 1 isoform 2 GRIPAP1 0.004 GRIP1 associated protein 1 isoform 1 KANK1 0.004 KN motif and ankyrin repeat domains 1 isoform b [Hom... KANK1 0.004 KN motif and ankyrin repeat domains 1 isoform a [Hom... TAF5 0.004 TBP-associated factor 5 EIF4A2 0.004 eukaryotic translation initiation factor 4A2 LGR4 0.004 leucine-rich repeat-containing G protein-coupled re... LOC653192 0.004 PREDICTED: Tripartite motif-containing protein 43-li... THSD1 0.004 thrombospondin type I domain-containing 1 isoform 2 ... THSD1 0.004 thrombospondin type I domain-containing 1 isoform 1 [... ZMYM1 0.004 zinc finger, MYM domain containing 1 PIGN 0.004 phosphatidylinositol glycan anchor biosynthesis, clas... PIGN 0.004 phosphatidylinositol glycan anchor biosynthesis, cla...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
