Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZMYM6 Sequence: fasta or formatted (1325aa) NCBI GI: 115511046
Description:

zinc finger protein 258

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         70           3
 C cysteine            5.0         66           2
 D aspartate           3.5         46           1
 E glutamate           6.6         87           3
 F phenylalanine       4.8         64           2
 G glycine             4.2         56           3
 H histidine           2.3         30           2
 I isoleucine          5.2         69           2
 K lysine              9.0        119           3
 L leucine             9.4        124           3
 M methionine          2.3         30           1
 N asparagine          4.5         60           3
 P proline             4.7         62           4
 Q glutamine           4.8         64           2
 R arginine            2.9         39           1
 S serine             11.3        150           3
 T threonine           5.7         76           2
 V valine              5.4         71           3
 W tryptophan          0.7          9           1
 Y tyrosine            2.5         33           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 258 
ZMYM4                 0.372   zinc finger protein 262 
SCAND3                0.178   SCAN domain containing 3 
LOC285550             0.145   hypothetical protein LOC285550 
ZMYM2                 0.137   zinc finger protein 198 
ZMYM2                 0.137   zinc finger protein 198 
C7orf38               0.132   hypothetical protein LOC221786 
ZMYM1                 0.131   zinc finger, MYM domain containing 1 
ZBED5                 0.128   zinc finger, BED-type containing 5 
ZBED5                 0.128   zinc finger, BED-type containing 5 
C5orf54               0.104   transposon-derived Buster3 transposase-like 
ZMYM3                 0.072   zinc finger protein 261 
ZMYM3                 0.072   zinc finger protein 261 
GTF2IRD2B             0.050   GTF2I repeat domain containing 2B 
GTF2IRD2              0.049   GTF2I repeat domain containing 2 
ZMYM5                 0.035   zinc finger protein 237 isoform 3 
EPM2AIP1              0.028   EPM2A interacting protein 1 
ZMYM5                 0.016   zinc finger protein 237 isoform 1 
KIAA1586              0.007   hypothetical protein LOC57691 
LOC729815             0.006   PREDICTED: hypothetical protein 
SOBP                  0.006   sine oculis binding protein homolog 
LOC729815             0.005   PREDICTED: hypothetical protein 
BAT2L                 0.005   HLA-B associated transcript 2-like 
PRR16                 0.005   proline rich 16 
ZBED1                 0.005   zinc finger, BED-type containing 1 
NUP62                 0.004   nucleoporin 62kDa 
NUP62                 0.004   nucleoporin 62kDa 
NUP62                 0.004   nucleoporin 62kDa 
NUP62                 0.004   nucleoporin 62kDa 
SYCP2L                0.004   synaptonemal complex protein 2-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press