Guide to the Human Genome
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Name: ZBED5 Sequence: fasta or formatted (693aa) NCBI GI: 219521826
Description:

zinc finger, BED-type containing 5

Not currently referenced in the text

Other entries for this name:
alt mRNA {693aa} zinc finger, BED-type containing 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         46           2
 C cysteine            2.9         20           1
 D aspartate           5.3         37           1
 E glutamate           6.2         43           3
 F phenylalanine       4.8         33           2
 G glycine             2.3         16           1
 H histidine           2.3         16           1
 I isoleucine          5.6         39           2
 K lysine              7.6         53           2
 L leucine            11.8         82           3
 M methionine          1.9         13           1
 N asparagine          5.2         36           2
 P proline             3.2         22           2
 Q glutamine           3.5         24           1
 R arginine            5.2         36           2
 S serine             10.0         69           2
 T threonine           5.2         36           2
 V valine              6.5         45           2
 W tryptophan          0.9          6           1
 Y tyrosine            3.0         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, BED-type containing 5 
ZBED5                 1.000   zinc finger, BED-type containing 5 
SCAND3                0.299   SCAN domain containing 3 
ZMYM6                 0.252   zinc finger protein 258 
LOC285550             0.239   hypothetical protein LOC285550 
C5orf54               0.238   transposon-derived Buster3 transposase-like 
C7orf38               0.230   hypothetical protein LOC221786 
GTF2IRD2              0.096   GTF2I repeat domain containing 2 
GTF2IRD2B             0.094   GTF2I repeat domain containing 2B 
EPM2AIP1              0.065   EPM2A interacting protein 1 
KIAA1586              0.009   hypothetical protein LOC57691 
FAM175A               0.004   coiled-coil domain containing 98 
KIAA1024              0.004   hypothetical protein LOC23251 
ZNF362                0.004   zinc finger protein 362 
KTN1                  0.004   kinectin 1 isoform b 
KTN1                  0.004   kinectin 1 isoform a 
KTN1                  0.004   kinectin 1 isoform c 
KTN1                  0.004   kinectin 1 isoform a 
ZNF532                0.004   zinc finger protein 532 
DSG3                  0.004   desmoglein 3 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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