Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 28558975
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28558975 mediator complex subunit 17 [Homo sapiens]
(651 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28558975 mediator complex subunit 17 [Homo sapiens] 1295 0.0
gi|5453974 protein kinase N2 [Homo sapiens] 33 0.63
gi|41872646 cullin 7 [Homo sapiens] 33 0.82
gi|148612829 RUN and TBC1 domain containing 1 isoform 2 [Homo sa... 33 0.82
gi|148612795 RUN and TBC1 domain containing 1 isoform 1 [Homo sa... 33 0.82
gi|239741309 PREDICTED: hypothetical protein XP_002344485 [Homo ... 33 1.1
gi|239754979 PREDICTED: hypothetical protein [Homo sapiens] 32 1.4
gi|61175232 hypothetical protein LOC221424 [Homo sapiens] 32 1.4
gi|42516563 UDP-glucuronate decarboxylase 1 [Homo sapiens] 32 1.8
gi|70167032 adenosine deaminase, RNA-specific isoform c [Homo sa... 32 2.4
gi|70166944 adenosine deaminase, RNA-specific isoform b [Homo sa... 32 2.4
gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo sa... 32 2.4
gi|32484979 adaptor-related protein complex 3, beta 1 subunit [H... 31 3.1
gi|57634514 SPANX-N2 protein [Homo sapiens] 31 3.1
gi|239757861 PREDICTED: similar to armadillo repeat containing, ... 30 5.3
gi|223029500 EF-hand calcium binding domain 5 isoform b [Homo sa... 30 5.3
gi|90652855 EF-hand calcium binding domain 5 isoform a [Homo sap... 30 5.3
gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens] 30 5.3
gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens] 30 5.3
gi|14210532 oxysterol-binding protein-like protein 6 isoform a [... 30 7.0
gi|83779010 SECIS binding protein 2 [Homo sapiens] 30 7.0
gi|156071420 hypothetical protein LOC728912 [Homo sapiens] 30 7.0
gi|119709825 neuroblastoma breakpoint family, member 11-like [Ho... 30 7.0
gi|140161500 ankyrin repeat and sterile alpha motif domain conta... 30 7.0
gi|221307568 DENN/MADD domain containing 4A isoform 1 [Homo sapi... 30 9.1
gi|221307566 DENN/MADD domain containing 4A isoform 2 [Homo sapi... 30 9.1
gi|154354998 inositol 1,4,5-triphosphate receptor, type 1 isofor... 30 9.1
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 30 9.1
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 30 9.1
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 30 9.1
>gi|28558975 mediator complex subunit 17 [Homo sapiens]
Length = 651
Score = 1295 bits (3351), Expect = 0.0
Identities = 651/651 (100%), Positives = 651/651 (100%)
Query: 1 MSGVRAVRISIESACEKQVHEVGLDGTETYLPPLSMSQNLARLAQRIDFSQGSGSEEEEA 60
MSGVRAVRISIESACEKQVHEVGLDGTETYLPPLSMSQNLARLAQRIDFSQGSGSEEEEA
Sbjct: 1 MSGVRAVRISIESACEKQVHEVGLDGTETYLPPLSMSQNLARLAQRIDFSQGSGSEEEEA 60
Query: 61 AGTEGDAQEWPGAGSSADQDDEEGVVKFQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVR 120
AGTEGDAQEWPGAGSSADQDDEEGVVKFQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVR
Sbjct: 61 AGTEGDAQEWPGAGSSADQDDEEGVVKFQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVR 120
Query: 121 DKKFMTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQ 180
DKKFMTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQ
Sbjct: 121 DKKFMTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQ 180
Query: 181 RDFNSELLRLRQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIKNTDLDLDKKIPEDY 240
RDFNSELLRLRQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIKNTDLDLDKKIPEDY
Sbjct: 181 RDFNSELLRLRQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIKNTDLDLDKKIPEDY 240
Query: 241 CPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVNLFKRPLPKSKPGSPHWQTKLEAAQN 300
CPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVNLFKRPLPKSKPGSPHWQTKLEAAQN
Sbjct: 241 CPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVNLFKRPLPKSKPGSPHWQTKLEAAQN 300
Query: 301 VLLCKEIFAQLSREAVQIKSQVPHIVVKNQIISQPFPSLQLSISLCHSSNDKKSQKFATE 360
VLLCKEIFAQLSREAVQIKSQVPHIVVKNQIISQPFPSLQLSISLCHSSNDKKSQKFATE
Sbjct: 301 VLLCKEIFAQLSREAVQIKSQVPHIVVKNQIISQPFPSLQLSISLCHSSNDKKSQKFATE 360
Query: 361 KQCPEDHLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFGHKRMRLSGPQAFDKNEINS 420
KQCPEDHLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFGHKRMRLSGPQAFDKNEINS
Sbjct: 361 KQCPEDHLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFGHKRMRLSGPQAFDKNEINS 420
Query: 421 LQSSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNINDVYESSVKVLIT 480
LQSSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNINDVYESSVKVLIT
Sbjct: 421 LQSSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNINDVYESSVKVLIT 480
Query: 481 SQGYEQICKSIQLQLNIGVEQIRVVHRDGRVITLSYQEQELQDFLLSQMSQHQVHAVQQL 540
SQGYEQICKSIQLQLNIGVEQIRVVHRDGRVITLSYQEQELQDFLLSQMSQHQVHAVQQL
Sbjct: 481 SQGYEQICKSIQLQLNIGVEQIRVVHRDGRVITLSYQEQELQDFLLSQMSQHQVHAVQQL 540
Query: 541 AKVMGWQVLSFSNHVGLGPIESIGNASAITVASPSGDYAISVRNGPESGSKIMVQFPRNQ 600
AKVMGWQVLSFSNHVGLGPIESIGNASAITVASPSGDYAISVRNGPESGSKIMVQFPRNQ
Sbjct: 541 AKVMGWQVLSFSNHVGLGPIESIGNASAITVASPSGDYAISVRNGPESGSKIMVQFPRNQ 600
Query: 601 CKDLPKSDVLQDNKWSHLRGPFKEVQWNKMEGRNFVYKMELLMSALSPCLL 651
CKDLPKSDVLQDNKWSHLRGPFKEVQWNKMEGRNFVYKMELLMSALSPCLL
Sbjct: 601 CKDLPKSDVLQDNKWSHLRGPFKEVQWNKMEGRNFVYKMELLMSALSPCLL 651
>gi|5453974 protein kinase N2 [Homo sapiens]
Length = 984
Score = 33.5 bits (75), Expect = 0.63
Identities = 35/173 (20%), Positives = 73/173 (42%), Gaps = 19/173 (10%)
Query: 4 VRAVRISIESACEKQVHEVGLDGTETYLPPLSMSQNLARLAQRIDFSQGSGSEEEEAAGT 63
+ +R+ I A Q +E+ D + + PL + R RI+F+ G++
Sbjct: 187 IEVIRMQILQAV--QTNELAFDNAKPVISPLELRMEELRHHFRIEFAVAEGAK------- 237
Query: 64 EGDAQEWPGAGSSADQDD-EEGVVKFQPSLWPWDSVRNNLRSALTEMCVLYDVLSIVRDK 122
+ + G+G D+ E +F S D ++ +L L E+ + I+ ++
Sbjct: 238 --NVMKLLGSGKVTDRKALSEAQARFNESSQKLDLLKYSLEQRLNEVPKNHPKSRIIIEE 295
Query: 123 KFMTLDPVSQDALPPKQNPQTLQ----LISKKKSLAGAAQILLKGAERLTKSV 171
+ + L P+Q+ + Q +SK +L G ++ L G + + ++V
Sbjct: 296 LSLV---AASPTLSPRQSMISTQNQYSTLSKPAALTGTLEVRLMGCQDILENV 345
>gi|41872646 cullin 7 [Homo sapiens]
Length = 1698
Score = 33.1 bits (74), Expect = 0.82
Identities = 23/102 (22%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 223 EVIKNTDLDLDKKIPEDYCPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVNLFKRPLP 282
EV++ +LD +I +D ++ +P +L + + + + DL +++K+ P
Sbjct: 511 EVLQILQENLDGEILDDEILAELAVPIELAQDLLLTLPQRLNDSALRDLINCHVYKKYGP 570
Query: 283 KSKPGSPHWQTKLEAAQNVLLC-KEIFAQLSREAVQIKSQVP 323
++ G+ + + LEA ++VLL + A+ S +A +++++ P
Sbjct: 571 EALAGNQAYPSLLEAQEDVLLLDAQAQAKDSEDAAKVEAKEP 612
>gi|148612829 RUN and TBC1 domain containing 1 isoform 2 [Homo
sapiens]
Length = 1006
Score = 33.1 bits (74), Expect = 0.82
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 13 SACEKQVHEVGLDGTETYLPPLSMSQNLARLAQRIDFSQGSGSEEEEAAGTEGDAQEWPG 72
+A +Q H V D ++ LP + + +D Q G EEE+ G EG + P
Sbjct: 689 TAVVEQQHSVEFDSPDSGLPSSRNYSVASGIQSSLDEGQSVGFEEEDGGGEEGSSGPGPA 748
Query: 73 AGSSADQDD 81
A + + D
Sbjct: 749 AHTLREPQD 757
>gi|148612795 RUN and TBC1 domain containing 1 isoform 1 [Homo
sapiens]
Length = 1051
Score = 33.1 bits (74), Expect = 0.82
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 13 SACEKQVHEVGLDGTETYLPPLSMSQNLARLAQRIDFSQGSGSEEEEAAGTEGDAQEWPG 72
+A +Q H V D ++ LP + + +D Q G EEE+ G EG + P
Sbjct: 734 TAVVEQQHSVEFDSPDSGLPSSRNYSVASGIQSSLDEGQSVGFEEEDGGGEEGSSGPGPA 793
Query: 73 AGSSADQDD 81
A + + D
Sbjct: 794 AHTLREPQD 802
>gi|239741309 PREDICTED: hypothetical protein XP_002344485 [Homo
sapiens]
Length = 4621
Score = 32.7 bits (73), Expect = 1.1
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 13/170 (7%)
Query: 314 EAVQIKSQVPHIVVKNQIISQPFPSLQL-------SISLCHSSNDKKSQKFATEKQCPED 366
E VQ KS P V K + P SL+ S C S+ K+ K E+
Sbjct: 180 EKVQ-KSSAPREVQKTEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDEVNS 238
Query: 367 HLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFGHKRMRLSGPQAFDKNEINSLQSSEG 426
L V + H + + L+ + +P P S+ + +GP + +K E+N L+ +E
Sbjct: 239 TLVVDRESSH----DECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEK 294
Query: 427 LLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNINDVYESSVK 476
L ++ ++ K F + + LA + + Q + + D+ +S ++
Sbjct: 295 LHPQLAEK-KQQFRNLKERCFVTQLAGFLANQQKKYKYEECKDLIKSMLR 343
>gi|239754979 PREDICTED: hypothetical protein [Homo sapiens]
Length = 780
Score = 32.3 bits (72), Expect = 1.4
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 42 RLAQRIDFSQGSGSEEEEAAGTEGDAQEWPGAGSSADQDDEEGVVKFQPSLWPWDSVRNN 101
++A+ + S SG+ A G W G G A G + WPW + +
Sbjct: 100 KMAEHLSLSDISGARTPAAGGRPSSGLLWVGPGLGA------GTAR---CFWPWALICSR 150
Query: 102 LRSALTEMCVLYDVLSIVRDKK 123
+ + +LY L++ D++
Sbjct: 151 MAFVSSRRLLLYKALAVAEDRR 172
>gi|61175232 hypothetical protein LOC221424 [Homo sapiens]
Length = 316
Score = 32.3 bits (72), Expect = 1.4
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 24 LDGTETY---LPPLSMSQNLA--RLAQRIDFSQGSGSEEEEAAGTEGDAQEW 70
LD E Y L L +++N L Q+I G EEEE AG GD QEW
Sbjct: 222 LDMVENYPTALRSLVLAENSISPELQQQICDLLSEGEEEEEVAGGAGDTQEW 273
>gi|42516563 UDP-glucuronate decarboxylase 1 [Homo sapiens]
Length = 420
Score = 32.0 bits (71), Expect = 1.8
Identities = 44/199 (22%), Positives = 88/199 (44%), Gaps = 27/199 (13%)
Query: 408 SGPQAFDKNEINSLQSSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNI 467
+ P + N I +L+++ ++ AK + R A+T + PQ + +W ++
Sbjct: 163 ASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHV 222
Query: 468 NDV-----YESSVKVLITSQGYEQICKSIQLQLNIGVEQIRVVH--------RDGRVITL 514
N + Y+ +V E +C + Q + V R+ + DGRV++
Sbjct: 223 NPIGPRACYDEGKRVA------ETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVS- 275
Query: 515 SYQEQELQ-DFLLSQMSQHQVHAVQQLAKVMGWQVLSFSNHVGLGPIESIGNASAITVAS 573
++ Q LQ + L S Q A Q ++ ++ V +++V P+ ++GN T+
Sbjct: 276 NFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVS-SPV-NLGNPEEHTIL- 332
Query: 574 PSGDYAISVRNGPESGSKI 592
++A ++N SGS+I
Sbjct: 333 ---EFAQLIKNLVGSGSEI 348
>gi|70167032 adenosine deaminase, RNA-specific isoform c [Homo
sapiens]
Length = 1181
Score = 31.6 bits (70), Expect = 2.4
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 399 PFGHKRMRLSGPQAFDKNEINSLQSSEGLLEKIIKQAKHIFLRSRAAATID--SLASRIE 456
P GH + + + + + NS SE LLE I + + + D S S
Sbjct: 213 PDGHSQGAPNSDPSLEPEDRNSTSVSEDLLEPFIAVSAQAWNQHSGVVRPDSHSQGSPNS 272
Query: 457 DPQIQAHWSNINDVYESSVKVLITSQGYEQIC---------KSIQLQLNIGVEQIRVVH 506
DP ++ SN E ++ L ++ E+IC ++ L NIG+ + R ++
Sbjct: 273 DPGLEPEDSNSTSALEDPLEFLDMAEIKEKICDYLFNVSDSSALNLAKNIGLTKARDIN 331
>gi|70166944 adenosine deaminase, RNA-specific isoform b [Homo
sapiens]
Length = 1200
Score = 31.6 bits (70), Expect = 2.4
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 399 PFGHKRMRLSGPQAFDKNEINSLQSSEGLLEKIIKQAKHIFLRSRAAATID--SLASRIE 456
P GH + + + + + NS SE LLE I + + + D S S
Sbjct: 213 PDGHSQGAPNSDPSLEPEDRNSTSVSEDLLEPFIAVSAQAWNQHSGVVRPDSHSQGSPNS 272
Query: 457 DPQIQAHWSNINDVYESSVKVLITSQGYEQIC---------KSIQLQLNIGVEQIRVVH 506
DP ++ SN E ++ L ++ E+IC ++ L NIG+ + R ++
Sbjct: 273 DPGLEPEDSNSTSALEDPLEFLDMAEIKEKICDYLFNVSDSSALNLAKNIGLTKARDIN 331
>gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo
sapiens]
Length = 1226
Score = 31.6 bits (70), Expect = 2.4
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 399 PFGHKRMRLSGPQAFDKNEINSLQSSEGLLEKIIKQAKHIFLRSRAAATID--SLASRIE 456
P GH + + + + + NS SE LLE I + + + D S S
Sbjct: 213 PDGHSQGAPNSDPSLEPEDRNSTSVSEDLLEPFIAVSAQAWNQHSGVVRPDSHSQGSPNS 272
Query: 457 DPQIQAHWSNINDVYESSVKVLITSQGYEQIC---------KSIQLQLNIGVEQIRVVH 506
DP ++ SN E ++ L ++ E+IC ++ L NIG+ + R ++
Sbjct: 273 DPGLEPEDSNSTSALEDPLEFLDMAEIKEKICDYLFNVSDSSALNLAKNIGLTKARDIN 331
>gi|32484979 adaptor-related protein complex 3, beta 1 subunit [Homo
sapiens]
Length = 1094
Score = 31.2 bits (69), Expect = 3.1
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 52 GSGSEEEEAAGTEGDAQEWPGAGSSADQDDEEG 84
GS S E+ +G EGD+ E SS++QD E G
Sbjct: 697 GSESGEQGESGEEGDSNEDSSEDSSSEQDSESG 729
>gi|57634514 SPANX-N2 protein [Homo sapiens]
Length = 180
Score = 31.2 bits (69), Expect = 3.1
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 17 KQVHEVGLD---GTETYLPPLSMSQNLARLAQRIDFSQGSGSEEEEAAGTEGDAQEWPGA 73
++ + GLD G+ L S+ ++ + +D S+GS E+E+ +EG +QE
Sbjct: 82 QEEEDEGLDSAEGSSQEDEDLDSSEGSSQEDEDLDSSEGSSQEDEDLDSSEGSSQEDEDL 141
Query: 74 GSS--ADQDDEE 83
SS + Q+DE+
Sbjct: 142 DSSEGSSQEDED 153
>gi|239757861 PREDICTED: similar to armadillo repeat containing,
X-linked 4 [Homo sapiens]
Length = 2382
Score = 30.4 bits (67), Expect = 5.3
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 52 GSGSEEEEAAGTEGDAQEWPGAGSSADQDDEEGVVKFQPSLWPWDSVRNNLRSAL 106
G+G+E AG E A+ GAG+ + GV W WD + S L
Sbjct: 1910 GAGAEAGAGAGAEAGAEAGAGAGAGPGTESGAGV-------WSWDGDATTVESRL 1957
>gi|223029500 EF-hand calcium binding domain 5 isoform b [Homo
sapiens]
Length = 856
Score = 30.4 bits (67), Expect = 5.3
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 283 KSKPGSPHWQTKLEAAQNVLLCKEIFAQLSREAVQIKSQVPHIVVKNQIISQPFPSLQLS 342
K PGS +K EA+ N+ + K + + ++KS+ H KN + +
Sbjct: 16 KISPGSIK-DSKTEASGNIAIRKSAKVIFALDETELKSKPEHTWKKNLFERMEARAQAMQ 74
Query: 343 ISLCHSSNDKKSQKFATEKQCPEDHL 368
+ N KK + EK+ P D+L
Sbjct: 75 QKIIDKENLKKELEKKAEKKLPRDNL 100
>gi|90652855 EF-hand calcium binding domain 5 isoform a [Homo
sapiens]
Length = 1503
Score = 30.4 bits (67), Expect = 5.3
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 283 KSKPGSPHWQTKLEAAQNVLLCKEIFAQLSREAVQIKSQVPHIVVKNQIISQPFPSLQLS 342
K PGS +K EA+ N+ + K + + ++KS+ H KN + +
Sbjct: 72 KISPGSIK-DSKTEASGNIAIRKSAKVIFALDETELKSKPEHTWKKNLFERMEARAQAMQ 130
Query: 343 ISLCHSSNDKKSQKFATEKQCPEDHL 368
+ N KK + EK+ P D+L
Sbjct: 131 QKIIDKENLKKELEKKAEKKLPRDNL 156
>gi|14589937 protocadherin 8 isoform 2 precursor [Homo sapiens]
Length = 973
Score = 30.4 bits (67), Expect = 5.3
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 18/158 (11%)
Query: 164 AERLTKSVTENQENKLQRDFNSELLRLRQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFE 223
AE L V+ + +L + FNS LLR+R+ VGD L R G F+
Sbjct: 50 AEDLHMKVSGDTSFRLMKQFNSSLLRVREGDGQLTVGDAGLD--RERLCGQAPQCVLAFD 107
Query: 224 VI-------KNTDLDLDKKIPEDYCPL--DVQIPSDLEGSAYIKVSIQKQAPDIGDLGTV 274
V+ + ++++ + D+ P QIP ++ A + I + P D+G
Sbjct: 108 VVSFSQEQFRLVHVEVEVRDVNDHAPRFPRAQIPVEVSEGAAVGTRIPLEVPVDEDVGAN 167
Query: 275 NLFKRPLPKSKPGSP---HWQTKLEAAQ--NVLLCKEI 307
L + + ++P SP QT+ + AQ +++L +E+
Sbjct: 168 GL--QTVRLAEPHSPFRVELQTRADGAQCADLVLLQEL 203
>gi|6631102 protocadherin 8 isoform 1 precursor [Homo sapiens]
Length = 1070
Score = 30.4 bits (67), Expect = 5.3
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 18/158 (11%)
Query: 164 AERLTKSVTENQENKLQRDFNSELLRLRQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFE 223
AE L V+ + +L + FNS LLR+R+ VGD L R G F+
Sbjct: 50 AEDLHMKVSGDTSFRLMKQFNSSLLRVREGDGQLTVGDAGLD--RERLCGQAPQCVLAFD 107
Query: 224 VI-------KNTDLDLDKKIPEDYCPL--DVQIPSDLEGSAYIKVSIQKQAPDIGDLGTV 274
V+ + ++++ + D+ P QIP ++ A + I + P D+G
Sbjct: 108 VVSFSQEQFRLVHVEVEVRDVNDHAPRFPRAQIPVEVSEGAAVGTRIPLEVPVDEDVGAN 167
Query: 275 NLFKRPLPKSKPGSP---HWQTKLEAAQ--NVLLCKEI 307
L + + ++P SP QT+ + AQ +++L +E+
Sbjct: 168 GL--QTVRLAEPHSPFRVELQTRADGAQCADLVLLQEL 203
>gi|14210532 oxysterol-binding protein-like protein 6 isoform a
[Homo sapiens]
Length = 934
Score = 30.0 bits (66), Expect = 7.0
Identities = 24/97 (24%), Positives = 52/97 (53%), Gaps = 12/97 (12%)
Query: 168 TKSVTENQENKLQRDFNSELLRLRQHWKLRKVGDKILGDLSYRSAGSLFPHHGTFEVIKN 227
TKSV+++ + +LQ F++ + +R H + D+ +++ P H T + +
Sbjct: 317 TKSVSKDTKIQLQVPFSATMSPVRLH----SSNPNLCADIEFQTP----PSHLTDPLESS 368
Query: 228 TDLDLDKKIPEDYCPLDVQIPSDLEGSAYIKVSIQKQ 264
TD K+ E++C + ++ S L+ SA+ ++I+K+
Sbjct: 369 TDY---TKLQEEFCLIAQKVHSLLK-SAFNSIAIEKE 401
>gi|83779010 SECIS binding protein 2 [Homo sapiens]
Length = 854
Score = 30.0 bits (66), Expect = 7.0
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 22/96 (22%)
Query: 32 PPLSMSQNLARLAQRIDFSQGSGSEEEEAAGTEG----------------------DAQE 69
P + +++ Q+ SQGS E+ EA+ DA+E
Sbjct: 349 PSYNKEKHIIHPTQKSKASQGSDLEQNEASRKNKKKKEKSTSKYEVLTVQEPPRIEDAEE 408
Query: 70 WPGAGSSADQDDEEGVVKFQPSLWPWDSVRNNLRSA 105
+P ++++ D KFQ P D+ +NN++ +
Sbjct: 409 FPNLAVASERRDRIETPKFQSKQQPQDNFKNNVKKS 444
>gi|156071420 hypothetical protein LOC728912 [Homo sapiens]
Length = 790
Score = 30.0 bits (66), Expect = 7.0
Identities = 34/174 (19%), Positives = 72/174 (41%), Gaps = 12/174 (6%)
Query: 310 QLSREAVQIKSQVPHIVVKNQIISQPFPSLQLSISLCHSSNDK-------KSQKFATEKQ 362
Q+ + ++S P V K + P SL+ C +S+ K+ K E+
Sbjct: 100 QVEEDEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSIQPHKNIKITFEED 159
Query: 363 CPEDHLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFGHKRMRLSGPQAFDKNEINSLQ 422
L V + H + + L+ + +P P S+ + +GP + +K E+N L+
Sbjct: 160 KVNSSLVVDRESSH----DGCQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILE 215
Query: 423 SSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNINDVYESSVK 476
+E L ++ ++ K F + + +A + Q + + D+ +S ++
Sbjct: 216 INEKLCPQLAEK-KQQFRSLKEKCFVTQVACFLAKQQNKYKYEECKDLIKSMLR 268
>gi|119709825 neuroblastoma breakpoint family, member 11-like [Homo
sapiens]
Length = 790
Score = 30.0 bits (66), Expect = 7.0
Identities = 34/174 (19%), Positives = 72/174 (41%), Gaps = 12/174 (6%)
Query: 310 QLSREAVQIKSQVPHIVVKNQIISQPFPSLQLSISLCHSSNDK-------KSQKFATEKQ 362
Q+ + ++S P V K + P SL+ C +S+ K+ K E+
Sbjct: 100 QVEEDEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSIQPHKNIKITFEED 159
Query: 363 CPEDHLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFGHKRMRLSGPQAFDKNEINSLQ 422
L V + H + + L+ + +P P S+ + +GP + +K E+N L+
Sbjct: 160 KVNSSLVVDRESSH----DGCQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILE 215
Query: 423 SSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQIQAHWSNINDVYESSVK 476
+E L ++ ++ K F + + +A + Q + + D+ +S ++
Sbjct: 216 INEKLCPQLAEK-KQQFRSLKEKCFVTQVACFLAKQQNKYKYEECKDLIKSMLR 268
>gi|140161500 ankyrin repeat and sterile alpha motif domain
containing 1 [Homo sapiens]
Length = 1134
Score = 30.0 bits (66), Expect = 7.0
Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 22/183 (12%)
Query: 383 HKQTLSSIMMPHPASAPFGHK---RMR---LSGPQAFDKNEINSLQSSEGLLEKIIKQAK 436
H +TL+ PHP A G + R R S P+A K + +S LL +
Sbjct: 580 HPETLTHTASPHPGGAEEGDRSGARSRAPPTSKPKAELKLSRSLSKSDSDLLTCSPTEDA 639
Query: 437 HIFLRSRAAATIDSLASRIE-DPQIQAHWSNINDVYESSVKVLITSQGYEQICKSIQLQL 495
+ RS + + R+E P + W I + S + + SQ ++I L+
Sbjct: 640 TMGSRSESLSNCSIGKKRLEKSPSFASEWDEIEKIMSSIGEGIDFSQERQKISGLRTLEQ 699
Query: 496 NIG--VEQIRVVHRDGRVITLSY-----------QEQELQDFLLS--QMSQHQVHAVQQL 540
++G +E I + + +++ + +EQ+L+D +S Q + + A + L
Sbjct: 700 SVGEWLESIGLQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARSL 759
Query: 541 AKV 543
KV
Sbjct: 760 PKV 762
>gi|221307568 DENN/MADD domain containing 4A isoform 1 [Homo sapiens]
Length = 1906
Score = 29.6 bits (65), Expect = 9.1
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 227 NTDLDLDKKIPEDYCPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVN 275
N DL+ K+ E++C +QIP++ +A K I A I G ++
Sbjct: 1590 NFDLNSKSKLQENFCTRSIQIPANRSKTAMSKCPIFPMARSISTSGPLD 1638
>gi|221307566 DENN/MADD domain containing 4A isoform 2 [Homo sapiens]
Length = 1863
Score = 29.6 bits (65), Expect = 9.1
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 227 NTDLDLDKKIPEDYCPLDVQIPSDLEGSAYIKVSIQKQAPDIGDLGTVN 275
N DL+ K+ E++C +QIP++ +A K I A I G ++
Sbjct: 1547 NFDLNSKSKLQENFCTRSIQIPANRSKTAMSKCPIFPMARSISTSGPLD 1595
>gi|154354998 inositol 1,4,5-triphosphate receptor, type 1 isoform 1
[Homo sapiens]
Length = 2710
Score = 29.6 bits (65), Expect = 9.1
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 75 SSADQDDEEGVVKFQPSLWP-WDSVRNNLRSALTEMCVLYDVLSIVRD---KKFMTLDPV 130
+ D D EE ++FQPS+ P D+ R+ LR+A +M +Y ++S+ LDP
Sbjct: 316 AEVDPDFEEECLEFQPSVDPDQDASRSRLRNAQEKM--VYSLVSVPEGNDISSIFELDPT 373
Query: 131 S---QDALPPKQN 140
+ D+L P+ +
Sbjct: 374 TLRGGDSLVPRNS 386
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 29.6 bits (65), Expect = 9.1
Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 20/165 (12%)
Query: 352 KKSQKFATEKQCPEDHLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFGHKRMRLSGPQ 411
KK + E Q + ++ + NL+ L R++H L S+ A G + + Q
Sbjct: 2347 KKVKDIQKELQSQQSNISSTQENLNSLCRKYHSAELESL-----GRAMTGLIKKHEAVSQ 2401
Query: 412 AFDKNEINSLQSSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQI-QAHWSNINDV 470
K + + +S E + +++ + FL ++AAA S R D ++ +A ++ ++
Sbjct: 2402 LCSKTQASLQESLEKHFSESMQEFQEWFLGAKAAAKESS--DRTGDSKVLEAKLHDLQNI 2459
Query: 471 YES-----SVKVLITSQGY-------EQICKSIQLQLNIGVEQIR 503
+S S +T +G +QI SIQ Q+ E+ +
Sbjct: 2460 LDSVSDGQSKLDAVTQEGQTLYAHLSKQIVSSIQEQITKANEEFQ 2504
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 29.6 bits (65), Expect = 9.1
Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 20/165 (12%)
Query: 352 KKSQKFATEKQCPEDHLYVLEHNLHLLIREFHKQTLSSIMMPHPASAPFGHKRMRLSGPQ 411
KK + E Q + ++ + NL+ L R++H L S+ A G + + Q
Sbjct: 2340 KKVKDIQKELQSQQSNISSTQENLNSLCRKYHSAELESL-----GRAMTGLIKKHEAVSQ 2394
Query: 412 AFDKNEINSLQSSEGLLEKIIKQAKHIFLRSRAAATIDSLASRIEDPQI-QAHWSNINDV 470
K + + +S E + +++ + FL ++AAA S R D ++ +A ++ ++
Sbjct: 2395 LCSKTQASLQESLEKHFSESMQEFQEWFLGAKAAAKESS--DRTGDSKVLEAKLHDLQNI 2452
Query: 471 YES-----SVKVLITSQGY-------EQICKSIQLQLNIGVEQIR 503
+S S +T +G +QI SIQ Q+ E+ +
Sbjct: 2453 LDSVSDGQSKLDAVTQEGQTLYAHLSKQIVSSIQEQITKANEEFQ 2497
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform
3 [Homo sapiens]
Length = 2059
Score = 29.6 bits (65), Expect = 9.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 56 EEEEAAGTEGDAQEWPGAGSSADQDDEEGVV 86
EEEE G E + +E A ++DD+EGV+
Sbjct: 22 EEEEEEGDEEEEEEVEAADEDDEEDDDEGVL 52
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,188,092
Number of Sequences: 37866
Number of extensions: 1074872
Number of successful extensions: 3590
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3564
Number of HSP's gapped (non-prelim): 45
length of query: 651
length of database: 18,247,518
effective HSP length: 109
effective length of query: 542
effective length of database: 14,120,124
effective search space: 7653107208
effective search space used: 7653107208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.