Guide to the Human Genome
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Name: ADAR Sequence: fasta or formatted (1181aa) NCBI GI: 70167032
Description:

adenosine deaminase, RNA-specific isoform c

Referenced in:

Interferon
RNA Editing and Other RNA Modifications

Other entries for this name:
alt prot [1226aa] adenosine deaminase, RNA-specific isoform a
alt prot [1200aa] adenosine deaminase, RNA-specific isoform b
alt prot [931aa] adenosine deaminase, RNA-specific isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         81           2
 C cysteine            1.8         21           2
 D aspartate           4.3         51           2
 E glutamate           7.3         86           2
 F phenylalanine       4.0         47           2
 G glycine             7.6         90           2
 H histidine           2.5         30           1
 I isoleucine          4.1         48           2
 K lysine              7.4         87           2
 L leucine             8.7        103           2
 M methionine          1.9         22           1
 N asparagine          4.1         48           2
 P proline             6.7         79           2
 Q glutamine           4.7         55           2
 R arginine            5.7         67           2
 S serine              8.9        105           2
 T threonine           5.0         59           2
 V valine              5.0         59           3
 W tryptophan          0.8         10           1
 Y tyrosine            2.8         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   adenosine deaminase, RNA-specific isoform c 
ADAR                  0.995   adenosine deaminase, RNA-specific isoform b 
ADAR                  0.989   adenosine deaminase, RNA-specific isoform a 
ADAR                  0.736   adenosine deaminase, RNA-specific isoform d 
ADARB1                0.102   RNA-specific adenosine deaminase B1 isoform 1 
ADARB2                0.098   adenosine deaminase, RNA-specific, B2 
ADARB1                0.096   RNA-specific adenosine deaminase B1 isoform 2 
ADARB1                0.095   RNA-specific adenosine deaminase B1 isoform 7 [Homo...
ADARB1                0.089   RNA-specific adenosine deaminase B1 isoform 3 
ADAD1                 0.045   adenosine deaminase domain containing 1 (testis-spe...
ADAD1                 0.045   adenosine deaminase domain containing 1 (testis-spec...
ADAD1                 0.041   adenosine deaminase domain containing 1 (testis-spe...
ADAD2                 0.040   adenosine deaminase domain containing 2 isoform 2 [...
ADAD2                 0.035   adenosine deaminase domain containing 2 isoform 1 [...
ADAT1                 0.024   adenosine deaminase, tRNA-specific 1 
STRBP                 0.019   spermatid perinuclear RNA binding protein 
ILF3                  0.016   interleukin enhancer binding factor 3 isoform c [Hom...
ILF3                  0.016   interleukin enhancer binding factor 3 isoform b [Hom...
ILF3                  0.016   interleukin enhancer binding factor 3 isoform a [Hom...
EIF2AK2               0.016   eukaryotic translation initiation factor 2-alpha ki...
EIF2AK2               0.016   eukaryotic translation initiation factor 2-alpha ki...
EIF2AK2               0.016   eukaryotic translation initiation factor 2-alpha kina...
ILF3                  0.016   interleukin enhancer binding factor 3 isoform e [Ho...
ILF3                  0.016   interleukin enhancer binding factor 3 isoform d [Ho...
TARBP2                0.015   TAR RNA binding protein 2 isoform b 
TARBP2                0.015   TAR RNA binding protein 2 isoform a 
TARBP2                0.015   TAR RNA binding protein 2 isoform b 
STAU2                 0.014   staufen homolog 2 
STAU1                 0.013   staufen isoform a 
STAU1                 0.013   staufen isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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