Search of human proteins with 27894298

Search of human proteins with 27894298

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27894298 interleukin 1 family, member 7 isoform 3 [Homo
sapiens]
         (157 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|27894298 interleukin 1 family, member 7 isoform 3 [Homo sapiens]   328   1e-90
gi|27894300 interleukin 1 family, member 7 isoform 4 [Homo sapiens]   314   2e-86
gi|27894296 interleukin 1 family, member 7 isoform 2 [Homo sapiens]   308   1e-84
gi|20127524 interleukin 1 family, member 7 isoform 1 proprotein ...   269   6e-73
gi|27894302 interleukin 1 family, member 7 isoform 5 [Homo sapiens]   269   6e-73
gi|9665234 interleukin 1 family, member 9 [Homo sapiens]               76   1e-14
gi|27894313 interleukin 1 family, member 8 isoform 2 [Homo sapiens]    74   7e-14
gi|27894310 interleukin 1 family, member 5 [Homo sapiens]              64   4e-11
gi|6912432 interleukin 1 family, member 5 [Homo sapiens]               64   4e-11
gi|27894307 interleukin 1 family, member 10 [Homo sapiens]             64   7e-11
gi|27894304 interleukin 1 family, member 10 [Homo sapiens]             64   7e-11
gi|7657092 interleukin 1 family, member 6 (epsilon) [Homo sapiens]     62   3e-10
gi|27894321 interleukin 1 receptor antagonist isoform 4 [Homo sa...    57   6e-09
gi|27894319 interleukin 1 receptor antagonist isoform 1 precurso...    57   6e-09
gi|27894317 interleukin 1 receptor antagonist isoform 2 [Homo sa...    57   6e-09
gi|10835147 interleukin 1 receptor antagonist isoform 3 [Homo sa...    57   6e-09
gi|10835145 interleukin 1, beta proprotein [Homo sapiens]              37   0.009
gi|20070252 interleukin 1 family, member 8 isoform 1 [Homo sapiens]    32   0.29 
gi|239741720 PREDICTED: hypothetical protein XP_002342298 [Homo ...    30   0.84 
gi|13518026 LIM and senescent cell antigen-like domains 1 [Homo ...    30   0.84 
gi|238859658 LIM and senescent cell antigen-like domains 2 isofo...    30   1.1  
gi|238776788 LIM and senescent cell antigen-like domains 2 isofo...    30   1.1  
gi|238776786 LIM and senescent cell antigen-like domains 2 isofo...    30   1.1  
gi|40804748 LIM and senescent cell antigen-like domains 2 isofor...    30   1.1  
gi|194248077 Kruppel-like factor 4 (gut) [Homo sapiens]                29   1.9  
gi|51093836 hypothetical protein LOC126859 isoform 1 [Homo sapiens]    28   3.2  
gi|40795665 ubiquitin specific protease 4 isoform a [Homo sapiens]     27   7.1  
gi|40795667 ubiquitin specific protease 4 isoform b [Homo sapiens]     27   7.1  
gi|57863271 hypothetical protein LOC23078 isoform a [Homo sapiens]     27   7.1  
gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precurs...    27   7.1  

>gi|27894298 interleukin 1 family, member 7 isoform 3 [Homo sapiens]
          Length = 157

 Score =  328 bits (840), Expect = 1e-90
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MSFVGENSGVKMGSEDWEKDEPQCCLEEIFFALASSLSSASAEKGSPILLGVSKGEFCLY 60
           MSFVGENSGVKMGSEDWEKDEPQCCLEEIFFALASSLSSASAEKGSPILLGVSKGEFCLY
Sbjct: 1   MSFVGENSGVKMGSEDWEKDEPQCCLEEIFFALASSLSSASAEKGSPILLGVSKGEFCLY 60

Query: 61  CDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGSWNMLESAAHPGWFICTSC 120
           CDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGSWNMLESAAHPGWFICTSC
Sbjct: 61  CDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGSWNMLESAAHPGWFICTSC 120

Query: 121 NCNEPVGVTDKFENRKHIEFSFQPVCKAEMSPSEVSD 157
           NCNEPVGVTDKFENRKHIEFSFQPVCKAEMSPSEVSD
Sbjct: 121 NCNEPVGVTDKFENRKHIEFSFQPVCKAEMSPSEVSD 157


>gi|27894300 interleukin 1 family, member 7 isoform 4 [Homo sapiens]
          Length = 178

 Score =  314 bits (805), Expect = 2e-86
 Identities = 156/178 (87%), Positives = 157/178 (88%), Gaps = 21/178 (11%)

Query: 1   MSFVGENSGVKMGSEDWEKDEPQCCLEE---------------------IFFALASSLSS 39
           MSFVGENSGVKMGSEDWEKDEPQCCLE+                     IFFALASSLSS
Sbjct: 1   MSFVGENSGVKMGSEDWEKDEPQCCLEDPAGSPLEPGPSLPTMNFVHTKIFFALASSLSS 60

Query: 40  ASAEKGSPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQ 99
           ASAEKGSPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQ
Sbjct: 61  ASAEKGSPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQ 120

Query: 100 VGSWNMLESAAHPGWFICTSCNCNEPVGVTDKFENRKHIEFSFQPVCKAEMSPSEVSD 157
           VGSWNMLESAAHPGWFICTSCNCNEPVGVTDKFENRKHIEFSFQPVCKAEMSPSEVSD
Sbjct: 121 VGSWNMLESAAHPGWFICTSCNCNEPVGVTDKFENRKHIEFSFQPVCKAEMSPSEVSD 178


>gi|27894296 interleukin 1 family, member 7 isoform 2 [Homo sapiens]
          Length = 197

 Score =  308 bits (789), Expect = 1e-84
 Identities = 157/197 (79%), Positives = 157/197 (79%), Gaps = 40/197 (20%)

Query: 1   MSFVGENSGVKMGSEDWEKDEPQCCLE--------------------------------- 27
           MSFVGENSGVKMGSEDWEKDEPQCCLE                                 
Sbjct: 1   MSFVGENSGVKMGSEDWEKDEPQCCLEGPKVKNLNPKKFSIHDQDHKVLVLDSGNLIAVP 60

Query: 28  -------EIFFALASSLSSASAEKGSPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLM 80
                  EIFFALASSLSSASAEKGSPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLM
Sbjct: 61  DKNYIRPEIFFALASSLSSASAEKGSPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLM 120

Query: 81  KLAAQKESARRPFIFYRAQVGSWNMLESAAHPGWFICTSCNCNEPVGVTDKFENRKHIEF 140
           KLAAQKESARRPFIFYRAQVGSWNMLESAAHPGWFICTSCNCNEPVGVTDKFENRKHIEF
Sbjct: 121 KLAAQKESARRPFIFYRAQVGSWNMLESAAHPGWFICTSCNCNEPVGVTDKFENRKHIEF 180

Query: 141 SFQPVCKAEMSPSEVSD 157
           SFQPVCKAEMSPSEVSD
Sbjct: 181 SFQPVCKAEMSPSEVSD 197


>gi|20127524 interleukin 1 family, member 7 isoform 1 proprotein
           [Homo sapiens]
          Length = 218

 Score =  269 bits (688), Expect = 6e-73
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 28  EIFFALASSLSSASAEKGSPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKE 87
           EIFFALASSLSSASAEKGSPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKE
Sbjct: 89  EIFFALASSLSSASAEKGSPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKE 148

Query: 88  SARRPFIFYRAQVGSWNMLESAAHPGWFICTSCNCNEPVGVTDKFENRKHIEFSFQPVCK 147
           SARRPFIFYRAQVGSWNMLESAAHPGWFICTSCNCNEPVGVTDKFENRKHIEFSFQPVCK
Sbjct: 149 SARRPFIFYRAQVGSWNMLESAAHPGWFICTSCNCNEPVGVTDKFENRKHIEFSFQPVCK 208

Query: 148 AEMSPSEVSD 157
           AEMSPSEVSD
Sbjct: 209 AEMSPSEVSD 218



 Score = 65.1 bits (157), Expect = 2e-11
 Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 10/99 (10%)

Query: 1  MSFVGENSGVKMGSEDWEKDEPQCCLEEIF---FALASSLSSASAEKGSPILLGVSKGEF 57
          MSFVGENSGVKMGSEDWEKDEPQCCLE+          SL + +    SP +  ++  +F
Sbjct: 1  MSFVGENSGVKMGSEDWEKDEPQCCLEDPAGSPLEPGPSLPTMNFVHTSPKVKNLNPKKF 60

Query: 58 CLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFY 96
           ++      Q H  L L    L  +A   ++  RP IF+
Sbjct: 61 SIH-----DQDHKVLVLDSGNL--IAVPDKNYIRPEIFF 92


>gi|27894302 interleukin 1 family, member 7 isoform 5 [Homo sapiens]
          Length = 192

 Score =  269 bits (688), Expect = 6e-73
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 28  EIFFALASSLSSASAEKGSPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKE 87
           EIFFALASSLSSASAEKGSPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKE
Sbjct: 63  EIFFALASSLSSASAEKGSPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKE 122

Query: 88  SARRPFIFYRAQVGSWNMLESAAHPGWFICTSCNCNEPVGVTDKFENRKHIEFSFQPVCK 147
           SARRPFIFYRAQVGSWNMLESAAHPGWFICTSCNCNEPVGVTDKFENRKHIEFSFQPVCK
Sbjct: 123 SARRPFIFYRAQVGSWNMLESAAHPGWFICTSCNCNEPVGVTDKFENRKHIEFSFQPVCK 182

Query: 148 AEMSPSEVSD 157
           AEMSPSEVSD
Sbjct: 183 AEMSPSEVSD 192


>gi|9665234 interleukin 1 family, member 9 [Homo sapiens]
          Length = 169

 Score = 75.9 bits (185), Expect = 1e-14
 Identities = 40/88 (45%), Positives = 57/88 (64%), Gaps = 4/88 (4%)

Query: 44  KGSPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGSW 103
           +G PI LG+   E CLYC+K   Q  P+LQLK++K+M L  Q E  + PF+FYRA+ G  
Sbjct: 71  RGDPIYLGIQNPEMCLYCEKVGEQ--PTLQLKEQKIMDLYGQPEPVK-PFLFYRAKTGRT 127

Query: 104 NMLESAAHPGWFICTSCNCNEPVGVTDK 131
           + LES A P WFI +S   ++P+ +T +
Sbjct: 128 STLESVAFPDWFIASS-KRDQPIILTSE 154


>gi|27894313 interleukin 1 family, member 8 isoform 2 [Homo sapiens]
          Length = 157

 Score = 73.6 bits (179), Expect = 7e-14
 Identities = 33/87 (37%), Positives = 60/87 (68%), Gaps = 3/87 (3%)

Query: 43  EKGSPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGS 102
           EKG+ + LG+   + CL+C + +G+  P+LQLK++ +M L  +K+ A++PF+F+  + GS
Sbjct: 57  EKGNMVYLGIKGKDLCLFCAEIQGK--PTLQLKEKNIMDLYVEKK-AQKPFLFFHNKEGS 113

Query: 103 WNMLESAAHPGWFICTSCNCNEPVGVT 129
            ++ +S ++PGWFI TS    +P+ +T
Sbjct: 114 TSVFQSVSYPGWFIATSTTSGQPIFLT 140


>gi|27894310 interleukin 1 family, member 5 [Homo sapiens]
          Length = 155

 Score = 64.3 bits (155), Expect = 4e-11
 Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 6/90 (6%)

Query: 46  SPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKL-AAQKESARRPFIFYRAQVGSWN 104
           SP++LGV  G  CL C   +    P+L L+   +M+L    KES  + F FYR  +G  +
Sbjct: 55  SPVILGVQGGSQCLSCGVGQ---EPTLTLEPVNIMELYLGAKES--KSFTFYRRDMGLTS 109

Query: 105 MLESAAHPGWFICTSCNCNEPVGVTDKFEN 134
             ESAA+PGWF+CT    ++PV +T   EN
Sbjct: 110 SFESAAYPGWFLCTVPEADQPVRLTQLPEN 139


>gi|6912432 interleukin 1 family, member 5 [Homo sapiens]
          Length = 155

 Score = 64.3 bits (155), Expect = 4e-11
 Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 6/90 (6%)

Query: 46  SPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKL-AAQKESARRPFIFYRAQVGSWN 104
           SP++LGV  G  CL C   +    P+L L+   +M+L    KES  + F FYR  +G  +
Sbjct: 55  SPVILGVQGGSQCLSCGVGQ---EPTLTLEPVNIMELYLGAKES--KSFTFYRRDMGLTS 109

Query: 105 MLESAAHPGWFICTSCNCNEPVGVTDKFEN 134
             ESAA+PGWF+CT    ++PV +T   EN
Sbjct: 110 SFESAAYPGWFLCTVPEADQPVRLTQLPEN 139


>gi|27894307 interleukin 1 family, member 10 [Homo sapiens]
          Length = 152

 Score = 63.5 bits (153), Expect = 7e-11
 Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 7/120 (5%)

Query: 24  CCLEEIFFALASSLSSASAEKGSPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLA 83
           CC E+I       L+        PI LG+  G  CL C +   +  PSLQL+   + +L 
Sbjct: 37  CCAEKICILPNRGLARTKV----PIFLGIQGGSRCLACVET--EEGPSLQLEDVNIEELY 90

Query: 84  AQKESARRPFIFYRAQVGSWNMLESAAHPGWFICTSCNCNEPVGVTDKFENRKHIEFSFQ 143
              E A R F F+++  GS   LE+AA PGWF+C      +PV +T + E     +F F+
Sbjct: 91  KGGEEATR-FTFFQSSSGSAFRLEAAAWPGWFLCGPAEPQQPVQLTKESEPSARTKFYFE 149


>gi|27894304 interleukin 1 family, member 10 [Homo sapiens]
          Length = 152

 Score = 63.5 bits (153), Expect = 7e-11
 Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 7/120 (5%)

Query: 24  CCLEEIFFALASSLSSASAEKGSPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLA 83
           CC E+I       L+        PI LG+  G  CL C +   +  PSLQL+   + +L 
Sbjct: 37  CCAEKICILPNRGLARTKV----PIFLGIQGGSRCLACVET--EEGPSLQLEDVNIEELY 90

Query: 84  AQKESARRPFIFYRAQVGSWNMLESAAHPGWFICTSCNCNEPVGVTDKFENRKHIEFSFQ 143
              E A R F F+++  GS   LE+AA PGWF+C      +PV +T + E     +F F+
Sbjct: 91  KGGEEATR-FTFFQSSSGSAFRLEAAAWPGWFLCGPAEPQQPVQLTKESEPSARTKFYFE 149


>gi|7657092 interleukin 1 family, member 6 (epsilon) [Homo sapiens]
          Length = 158

 Score = 61.6 bits (148), Expect = 3e-10
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 43  EKGSPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGS 102
           ++G+PI LG++    CL C K   Q  P+LQLK++ +M L  Q E  +  F+FY +Q G 
Sbjct: 58  DRGNPIYLGLNGLNLCLMCAKVGDQ--PTLQLKEKDIMDLYNQPEPVKS-FLFYHSQSGR 114

Query: 103 WNMLESAAHPGWFICTSCNCNEPVGVTDKFENRKHIEF 140
            +  ES A PGWFI  S     P+ +T +       +F
Sbjct: 115 NSTFESVAFPGWFIAVSSEGGCPLILTQELGKANTTDF 152


>gi|27894321 interleukin 1 receptor antagonist isoform 4 [Homo
           sapiens]
          Length = 143

 Score = 57.0 bits (136), Expect = 6e-09
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 48  ILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGSWNMLE 107
           + LG+  G+ CL C K   ++   LQL+   +  L+  ++  +R F F R+  G     E
Sbjct: 47  LFLGIHGGKMCLSCVKSGDETR--LQLEAVNITDLSENRKQDKR-FAFIRSDSGPTTSFE 103

Query: 108 SAAHPGWFICTSCNCNEPVGVTD 130
           SAA PGWF+CT+   ++PV +T+
Sbjct: 104 SAACPGWFLCTAMEADQPVSLTN 126


>gi|27894319 interleukin 1 receptor antagonist isoform 1 precursor
           [Homo sapiens]
          Length = 177

 Score = 57.0 bits (136), Expect = 6e-09
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 48  ILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGSWNMLE 107
           + LG+  G+ CL C K   ++   LQL+   +  L+  ++  +R F F R+  G     E
Sbjct: 81  LFLGIHGGKMCLSCVKSGDETR--LQLEAVNITDLSENRKQDKR-FAFIRSDSGPTTSFE 137

Query: 108 SAAHPGWFICTSCNCNEPVGVTD 130
           SAA PGWF+CT+   ++PV +T+
Sbjct: 138 SAACPGWFLCTAMEADQPVSLTN 160


>gi|27894317 interleukin 1 receptor antagonist isoform 2 [Homo
           sapiens]
          Length = 180

 Score = 57.0 bits (136), Expect = 6e-09
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 48  ILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGSWNMLE 107
           + LG+  G+ CL C K   ++   LQL+   +  L+  ++  +R F F R+  G     E
Sbjct: 84  LFLGIHGGKMCLSCVKSGDETR--LQLEAVNITDLSENRKQDKR-FAFIRSDSGPTTSFE 140

Query: 108 SAAHPGWFICTSCNCNEPVGVTD 130
           SAA PGWF+CT+   ++PV +T+
Sbjct: 141 SAACPGWFLCTAMEADQPVSLTN 163


>gi|10835147 interleukin 1 receptor antagonist isoform 3 [Homo
           sapiens]
          Length = 159

 Score = 57.0 bits (136), Expect = 6e-09
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 48  ILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGSWNMLE 107
           + LG+  G+ CL C K   ++   LQL+   +  L+  ++  +R F F R+  G     E
Sbjct: 63  LFLGIHGGKMCLSCVKSGDETR--LQLEAVNITDLSENRKQDKR-FAFIRSDSGPTTSFE 119

Query: 108 SAAHPGWFICTSCNCNEPVGVTD 130
           SAA PGWF+CT+   ++PV +T+
Sbjct: 120 SAACPGWFLCTAMEADQPVSLTN 142


>gi|10835145 interleukin 1, beta proprotein [Homo sapiens]
          Length = 269

 Score = 36.6 bits (83), Expect = 0.009
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 7/101 (6%)

Query: 27  EEIFFALASSLSSASAEKGSPILLGVSKGEFCLYCD-KDKGQSHPSLQLKKEKLMKLAAQ 85
           +++ F+++      S +K  P+ LG+ +    L C  KD     P+LQL  E +      
Sbjct: 154 QQVVFSMSFVQGEESNDK-IPVALGLKEKNLYLSCVLKD---DKPTLQL--ESVDPKNYP 207

Query: 86  KESARRPFIFYRAQVGSWNMLESAAHPGWFICTSCNCNEPV 126
           K+   + F+F + ++ +    ESA  P W+I TS   N PV
Sbjct: 208 KKKMEKRFVFNKIEINNKLEFESAQFPNWYISTSQAENMPV 248


>gi|20070252 interleukin 1 family, member 8 isoform 1 [Homo
          sapiens]
          Length = 164

 Score = 31.6 bits (70), Expect = 0.29
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 43 EKGSPILLGVSKGEFCLYCDKDKGQSHPSLQLK 75
          EKG+ + LG+   + CL+C + +G+  P+LQLK
Sbjct: 57 EKGNMVYLGIKGKDLCLFCAEIQGK--PTLQLK 87


>gi|239741720 PREDICTED: hypothetical protein XP_002342298 [Homo
           sapiens]
          Length = 248

 Score = 30.0 bits (66), Expect = 0.84
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 111 HPGWFICTSCNCNEPVGVTDKFENRKHIEFSFQ 143
           H   F+C  C    P G+  +FE RK+ E  FQ
Sbjct: 94  HEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ 126


>gi|13518026 LIM and senescent cell antigen-like domains 1 [Homo
           sapiens]
          Length = 325

 Score = 30.0 bits (66), Expect = 0.84
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 111 HPGWFICTSCNCNEPVGVTDKFENRKHIEFSFQ 143
           H   F+C  C    P G+  +FE RK+ E  FQ
Sbjct: 32  HEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ 64



 Score = 28.1 bits (61), Expect = 3.2
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 7/42 (16%)

Query: 108 SAAHPGWFI-CTSCN-CNEPVGVTDKFENRKHIEFSFQPVCK 147
           SA +  W + C +C+ CN  + + +KF     +EF  +PVCK
Sbjct: 265 SALNKAWCVNCFACSTCNTKLTLKNKF-----VEFDMKPVCK 301


>gi|238859658 LIM and senescent cell antigen-like domains 2 isoform
           1 [Homo sapiens]
          Length = 363

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 7/42 (16%)

Query: 108 SAAHPGWFI-CTSCN-CNEPVGVTDKFENRKHIEFSFQPVCK 147
           SA +  W + C SC+ CN  + + +KF     +EF  +PVCK
Sbjct: 292 SALNKAWCVSCFSCSTCNSKLTLKNKF-----VEFDMKPVCK 328



 Score = 29.3 bits (64), Expect = 1.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 111 HPGWFICTSCNCNEPVGVTDKFENRKHIEFSFQ 143
           H   F+C  C    P G+  +FE RK+ E  FQ
Sbjct: 59  HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQ 91


>gi|238776788 LIM and senescent cell antigen-like domains 2 isoform
           5 [Homo sapiens]
          Length = 336

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 7/42 (16%)

Query: 108 SAAHPGWFI-CTSCN-CNEPVGVTDKFENRKHIEFSFQPVCK 147
           SA +  W + C SC+ CN  + + +KF     +EF  +PVCK
Sbjct: 265 SALNKAWCVSCFSCSTCNSKLTLKNKF-----VEFDMKPVCK 301



 Score = 29.3 bits (64), Expect = 1.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 111 HPGWFICTSCNCNEPVGVTDKFENRKHIEFSFQ 143
           H   F+C  C    P G+  +FE RK+ E  FQ
Sbjct: 32  HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQ 64


>gi|238776786 LIM and senescent cell antigen-like domains 2 isoform
           3 [Homo sapiens]
          Length = 341

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 7/42 (16%)

Query: 108 SAAHPGWFI-CTSCN-CNEPVGVTDKFENRKHIEFSFQPVCK 147
           SA +  W + C SC+ CN  + + +KF     +EF  +PVCK
Sbjct: 270 SALNKAWCVSCFSCSTCNSKLTLKNKF-----VEFDMKPVCK 306



 Score = 29.3 bits (64), Expect = 1.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 111 HPGWFICTSCNCNEPVGVTDKFENRKHIEFSFQ 143
           H   F+C  C    P G+  +FE RK+ E  FQ
Sbjct: 37  HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQ 69


>gi|40804748 LIM and senescent cell antigen-like domains 2 isoform 2
           [Homo sapiens]
          Length = 365

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 7/42 (16%)

Query: 108 SAAHPGWFI-CTSCN-CNEPVGVTDKFENRKHIEFSFQPVCK 147
           SA +  W + C SC+ CN  + + +KF     +EF  +PVCK
Sbjct: 294 SALNKAWCVSCFSCSTCNSKLTLKNKF-----VEFDMKPVCK 330



 Score = 29.3 bits (64), Expect = 1.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 111 HPGWFICTSCNCNEPVGVTDKFENRKHIEFSFQ 143
           H   F+C  C    P G+  +FE RK+ E  FQ
Sbjct: 61  HEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQ 93


>gi|194248077 Kruppel-like factor 4 (gut) [Homo sapiens]
          Length = 479

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 31  FALASSLSSASAEKGSPILLGVSKG 55
           F L +SLS+  +E GSP ++ VSKG
Sbjct: 229 FVLKASLSAPGSEYGSPSVISVSKG 253


>gi|51093836 hypothetical protein LOC126859 isoform 1 [Homo sapiens]
          Length = 1012

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 62  DKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQVGSW 103
           +K++ +  PS   +KEKL++   + E+     +F    + SW
Sbjct: 864 NKERAEEQPSTSTEKEKLIRFIGEDENVHSKPLFETDVLSSW 905


>gi|40795665 ubiquitin specific protease 4 isoform a [Homo sapiens]
          Length = 963

 Score = 26.9 bits (58), Expect = 7.1
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 20  DEPQCCLEEIFF----ALASSLSSASAEKGSPILLGVSKGEFCL 59
           D  +C    ++F    +  SS SSASA  G P+LL V K +  L
Sbjct: 573 DGSECVTLPVYFRERKSRPSSTSSASALYGQPLLLSVPKHKLTL 616


>gi|40795667 ubiquitin specific protease 4 isoform b [Homo sapiens]
          Length = 916

 Score = 26.9 bits (58), Expect = 7.1
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 20  DEPQCCLEEIFF----ALASSLSSASAEKGSPILLGVSKGEFCL 59
           D  +C    ++F    +  SS SSASA  G P+LL V K +  L
Sbjct: 526 DGSECVTLPVYFRERKSRPSSTSSASALYGQPLLLSVPKHKLTL 569


>gi|57863271 hypothetical protein LOC23078 isoform a [Homo sapiens]
          Length = 1905

 Score = 26.9 bits (58), Expect = 7.1
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 82   LAAQKESARRPFIFYRAQVGSWNMLESAAHPGWFICTSCNCNEPVGVTDKFENRKH 137
            L ++K ++++PF + + +  ++ M +  +H  W +      N  + V D  E R H
Sbjct: 1207 LPSEKFTSKKPFWWNKEEAETYKMCKEFSHKNWLVFYKEKGNS-LTVLDVLEGRTH 1261


>gi|11128031 protocadherin gamma subfamily B, 5 isoform 1 precursor
           [Homo sapiens]
          Length = 923

 Score = 26.9 bits (58), Expect = 7.1
 Identities = 13/35 (37%), Positives = 15/35 (42%)

Query: 39  SASAEKGSPILLGVSKGEFCLYCDKDKGQSHPSLQ 73
           S     G  IL G S G     C+  +  SHP LQ
Sbjct: 766 SEQLSSGQDILCGDSSGALFPLCNSSESTSHPELQ 800


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.131    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,309,920
Number of Sequences: 37866
Number of extensions: 259557
Number of successful extensions: 612
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 38
length of query: 157
length of database: 18,247,518
effective HSP length: 94
effective length of query: 63
effective length of database: 14,688,114
effective search space: 925351182
effective search space used: 925351182
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.