Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: IL1F7 Sequence: fasta or formatted (157aa) NCBI GI: 27894298
Description:

interleukin 1 family, member 7 isoform 3

Referenced in:

Interleukins and Their Receptors

Other entries for this name:
alt prot [218aa] interleukin 1 family, member 7 isoform 1 proprotein
alt prot [197aa] interleukin 1 family, member 7 isoform 2
alt prot [178aa] interleukin 1 family, member 7 isoform 4
alt prot [192aa] interleukin 1 family, member 7 isoform 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         11           2
 C cysteine            5.1          8           2
 D aspartate           3.8          6           1
 E glutamate          10.2         16           2
 F phenylalanine       6.4         10           2
 G glycine             6.4         10           1
 H histidine           1.9          3           1
 I isoleucine          3.2          5           1
 K lysine              8.9         14           2
 L leucine             7.0         11           2
 M methionine          3.2          5           1
 N asparagine          3.2          5           1
 P proline             5.1          8           1
 Q glutamine           3.8          6           1
 R arginine            2.5          4           2
 S serine             12.7         20           2
 T threonine           1.3          2           1
 V valine              5.1          8           1
 W tryptophan          1.9          3           1
 Y tyrosine            1.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interleukin 1 family, member 7 isoform 3 
IL1F7                 0.954   interleukin 1 family, member 7 isoform 4 
IL1F7                 0.934   interleukin 1 family, member 7 isoform 2 
IL1F7                 0.805   interleukin 1 family, member 7 isoform 1 proprotein ...
IL1F7                 0.805   interleukin 1 family, member 7 isoform 5 
IL1F9                 0.168   interleukin 1 family, member 9 
IL1F8                 0.162   interleukin 1 family, member 8 isoform 2 
IL1F5                 0.129   interleukin 1 family, member 5 
IL1F5                 0.129   interleukin 1 family, member 5 
IL1F10                0.129   interleukin 1 family, member 10 
IL1F10                0.129   interleukin 1 family, member 10 
IL1F6                 0.122   interleukin 1 family, member 6 (epsilon) 
IL1RN                 0.106   interleukin 1 receptor antagonist isoform 4 
IL1RN                 0.106   interleukin 1 receptor antagonist isoform 1 precurso...
IL1RN                 0.106   interleukin 1 receptor antagonist isoform 2 
IL1RN                 0.106   interleukin 1 receptor antagonist isoform 3 
IL1B                  0.040   interleukin 1, beta proprotein 
IL1F8                 0.023   interleukin 1 family, member 8 isoform 1 
LOC100288695          0.017   PREDICTED: hypothetical protein XP_002342298 
LIMS1                 0.017   LIM and senescent cell antigen-like domains 1 
LIMS2                 0.017   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.017   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.017   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.017   LIM and senescent cell antigen-like domains 2 isofor...
KLF4                  0.013   Kruppel-like factor 4 (gut) 
C1orf125              0.010   hypothetical protein LOC126859 isoform 1 
USP4                  0.007   ubiquitin specific protease 4 isoform a 
USP4                  0.007   ubiquitin specific protease 4 isoform b 
KIAA0564              0.007   hypothetical protein LOC23078 isoform a 
PCDHGB5               0.007   protocadherin gamma subfamily B, 5 isoform 1 precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press