Guide to the Human Genome
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Name: IL1RN Sequence: fasta or formatted (177aa) NCBI GI: 27894319
Description:

interleukin 1 receptor antagonist isoform 1 precursor

Referenced in:

Interleukins and Their Receptors

Other entries for this name:
alt prot [159aa] interleukin 1 receptor antagonist isoform 3
alt prot [180aa] interleukin 1 receptor antagonist isoform 2
alt prot [143aa] interleukin 1 receptor antagonist isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1          9           2
 C cysteine            3.4          6           1
 D aspartate           5.1          9           1
 E glutamate           7.3         13           2
 F phenylalanine       6.2         11           1
 G glycine             6.2         11           2
 H histidine           2.3          4           1
 I isoleucine          5.1          9           1
 K lysine              5.1          9           1
 L leucine            10.2         18           3
 M methionine          3.4          6           1
 N asparagine          4.5          8           2
 P proline             4.5          8           1
 Q glutamine           4.5          8           1
 R arginine            5.6         10           1
 S serine              7.3         13           2
 T threonine           5.6         10           2
 V valine              5.6         10           2
 W tryptophan          1.1          2           1
 Y tyrosine            1.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interleukin 1 receptor antagonist isoform 1 precurso... 
IL1RN                 0.879   interleukin 1 receptor antagonist isoform 2 
IL1RN                 0.879   interleukin 1 receptor antagonist isoform 3 
IL1RN                 0.799   interleukin 1 receptor antagonist isoform 4 
IL1F5                 0.289   interleukin 1 family, member 5 
IL1F5                 0.289   interleukin 1 family, member 5 
IL1F10                0.212   interleukin 1 family, member 10 
IL1F10                0.212   interleukin 1 family, member 10 
IL1F6                 0.136   interleukin 1 family, member 6 (epsilon) 
IL1F8                 0.127   interleukin 1 family, member 8 isoform 2 
IL1F9                 0.118   interleukin 1 family, member 9 
IL1F7                 0.097   interleukin 1 family, member 7 isoform 2 
IL1F7                 0.097   interleukin 1 family, member 7 isoform 1 proprotein ...
IL1F7                 0.097   interleukin 1 family, member 7 isoform 5 
IL1F7                 0.094   interleukin 1 family, member 7 isoform 4 
IL1F7                 0.094   interleukin 1 family, member 7 isoform 3 
IL1B                  0.083   interleukin 1, beta proprotein 
SHC1                  0.009   SHC (Src homology 2 domain containing) transforming...
SHC1                  0.009   SHC (Src homology 2 domain containing) transforming...
SHC1                  0.009   SHC (Src homology 2 domain containing) transforming...
SHC1                  0.009   SHC (Src homology 2 domain containing) transforming ...
LOC100291393          0.009   PREDICTED: hypothetical protein XP_002347924 
SHC2                  0.009   SHC (Src homology 2 domain containing) transforming...
DEF6                  0.006   differentially expressed in FDCP 6 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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