Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: IL1RN Sequence: fasta or formatted (180aa) NCBI GI: 27894317
Description:

interleukin 1 receptor antagonist isoform 2

Referenced in:

Interleukins and Their Receptors

Other entries for this name:
alt prot [159aa] interleukin 1 receptor antagonist isoform 3
alt prot [177aa] interleukin 1 receptor antagonist isoform 1 precursor
alt prot [143aa] interleukin 1 receptor antagonist isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         12           2
 C cysteine            2.8          5           1
 D aspartate           6.7         12           1
 E glutamate           8.9         16           2
 F phenylalanine       5.0          9           1
 G glycine             9.4         17           6
 H histidine           1.1          2           1
 I isoleucine          3.9          7           1
 K lysine              5.6         10           1
 L leucine             7.8         14           1
 M methionine          3.3          6           1
 N asparagine          5.0          9           2
 P proline             4.4          8           1
 Q glutamine           4.4          8           1
 R arginine            4.4          8           1
 S serine              6.7         12           2
 T threonine           5.0          9           2
 V valine              5.6         10           2
 W tryptophan          1.1          2           1
 Y tyrosine            2.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interleukin 1 receptor antagonist isoform 2 
IL1RN                 0.859   interleukin 1 receptor antagonist isoform 1 precurso...
IL1RN                 0.859   interleukin 1 receptor antagonist isoform 3 
IL1RN                 0.781   interleukin 1 receptor antagonist isoform 4 
IL1F5                 0.282   interleukin 1 family, member 5 
IL1F5                 0.282   interleukin 1 family, member 5 
IL1F10                0.207   interleukin 1 family, member 10 
IL1F10                0.207   interleukin 1 family, member 10 
IL1F6                 0.133   interleukin 1 family, member 6 (epsilon) 
IL1F8                 0.124   interleukin 1 family, member 8 isoform 2 
IL1F9                 0.115   interleukin 1 family, member 9 
IL1F7                 0.101   interleukin 1 family, member 7 isoform 2 
IL1F7                 0.095   interleukin 1 family, member 7 isoform 1 proprotein ...
IL1F7                 0.095   interleukin 1 family, member 7 isoform 5 
IL1F7                 0.092   interleukin 1 family, member 7 isoform 4 
IL1F7                 0.092   interleukin 1 family, member 7 isoform 3 
IL1B                  0.081   interleukin 1, beta proprotein 
BAI1                  0.020   brain-specific angiogenesis inhibitor 1 precursor [...
NEK9                  0.014   NIMA-related kinase 9 
KCNJ9                 0.012   potassium inwardly-rectifying channel subfamily J9 [...
ZNF384                0.009   nuclear matrix transcription factor 4 isoform c [Hom...
ZNF384                0.009   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.009   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.009   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.009   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.009   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.009   nuclear matrix transcription factor 4 isoform d [Ho...
SOX1                  0.009   SRY (sex determining region Y)-box 1 
SHC1                  0.009   SHC (Src homology 2 domain containing) transforming...
SHC1                  0.009   SHC (Src homology 2 domain containing) transforming...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press