Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 27777653
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27777653 sperm acrosome associated 3 [Homo sapiens]
(215 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27777653 sperm acrosome associated 3 [Homo sapiens] 450 e-127
gi|73390143 lysozyme-like 1 [Homo sapiens] 160 8e-40
gi|73088987 lysozyme-like 2 [Homo sapiens] 155 3e-38
gi|118498373 sperm acrosome associated 5 [Homo sapiens] 151 5e-37
gi|120952755 sperm acrosome associated 5B [Homo sapiens] 151 5e-37
gi|4557894 lysozyme precursor [Homo sapiens] 147 9e-36
gi|9966905 lysozyme-like 6 [Homo sapiens] 139 2e-33
gi|21389465 lysozyme-like 4 [Homo sapiens] 127 7e-30
gi|4504947 lactalbumin, alpha- precursor [Homo sapiens] 89 2e-18
gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens] 34 0.11
gi|239743315 PREDICTED: hypothetical protein XP_002342820 [Homo ... 33 0.24
gi|239508997 PREDICTED: hypothetical protein [Homo sapiens] 33 0.24
gi|190341091 feline leukemia virus subgroup C cellular receptor ... 32 0.31
gi|46195763 metastasis suppressor 1-like [Homo sapiens] 32 0.53
gi|66773086 SH3-binding kinase 1 [Homo sapiens] 30 1.5
gi|239757230 PREDICTED: hypothetical protein [Homo sapiens] 29 2.6
gi|239751738 PREDICTED: hypothetical protein [Homo sapiens] 29 2.6
gi|239746239 PREDICTED: hypothetical protein XP_002343711 [Homo ... 29 2.6
gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens] 29 3.5
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 29 3.5
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens] 29 3.5
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 28 4.5
gi|4503483 eukaryotic translation elongation factor 2 [Homo sapi... 28 4.5
gi|4557595 forkhead box F2 [Homo sapiens] 28 4.5
gi|164565408 common-site lymphoma/leukemia guanine nucleotide ex... 28 4.5
gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [... 28 4.5
gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens] 28 4.5
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 28 5.9
gi|14149669 mitogen-activated protein kinase kinase kinase 7 int... 28 5.9
gi|4826894 phosphodiesterase 1C [Homo sapiens] 28 7.7
>gi|27777653 sperm acrosome associated 3 [Homo sapiens]
Length = 215
Score = 450 bits (1157), Expect = e-127
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MVSALRGAPLIRVHSSPVSSPSVSGPRRLVSCLSSQSSALSQSGGGSTSAAGIEARSRAL 60
MVSALRGAPLIRVHSSPVSSPSVSGPRRLVSCLSSQSSALSQSGGGSTSAAGIEARSRAL
Sbjct: 1 MVSALRGAPLIRVHSSPVSSPSVSGPRRLVSCLSSQSSALSQSGGGSTSAAGIEARSRAL 60
Query: 61 RRRWCPAGIMLLALVCLLSCLLPSSEAKLYGRCELARVLHDFGLDGYRGYSLADWVCLAY 120
RRRWCPAGIMLLALVCLLSCLLPSSEAKLYGRCELARVLHDFGLDGYRGYSLADWVCLAY
Sbjct: 61 RRRWCPAGIMLLALVCLLSCLLPSSEAKLYGRCELARVLHDFGLDGYRGYSLADWVCLAY 120
Query: 121 FTSGFNAAALDYEADGSTNNGIFQINSRRWCSNLTPNVPNVCRMYCSDLLNPNLKDTVIC 180
FTSGFNAAALDYEADGSTNNGIFQINSRRWCSNLTPNVPNVCRMYCSDLLNPNLKDTVIC
Sbjct: 121 FTSGFNAAALDYEADGSTNNGIFQINSRRWCSNLTPNVPNVCRMYCSDLLNPNLKDTVIC 180
Query: 181 AMKITQEPQGLGYWEAWRHHCQGKDLTEWVDGCDF 215
AMKITQEPQGLGYWEAWRHHCQGKDLTEWVDGCDF
Sbjct: 181 AMKITQEPQGLGYWEAWRHHCQGKDLTEWVDGCDF 215
>gi|73390143 lysozyme-like 1 [Homo sapiens]
Length = 194
Score = 160 bits (405), Expect = 8e-40
Identities = 79/193 (40%), Positives = 114/193 (59%), Gaps = 7/193 (3%)
Query: 22 SVSGPRRLVSCLSSQSSALSQSGGGSTSAAGIEARSRALRRRWCPAGIMLLALVCLLSCL 81
S P + S S+ S+ S SG G+ + +ALR + AGI+ L + CL
Sbjct: 7 SCLSPTKWSSVSSADSTEKSASGAGTRNLPFQFCLRQALRMK--AAGILTL-----IGCL 59
Query: 82 LPSSEAKLYGRCELARVLHDFGLDGYRGYSLADWVCLAYFTSGFNAAALDYEADGSTNNG 141
+ +E+K+Y RC+LA++ GLD Y G+SL +W+C+AY+ SG+N A DGS + G
Sbjct: 60 VTGAESKIYTRCKLAKIFSRAGLDNYWGFSLGNWICMAYYESGYNTTAQTVLDDGSIDYG 119
Query: 142 IFQINSRRWCSNLTPNVPNVCRMYCSDLLNPNLKDTVICAMKITQEPQGLGYWEAWRHHC 201
IFQINS WC N C + CS L+ +L D +ICA KI +E QG+ YW+ W+ HC
Sbjct: 120 IFQINSFAWCRRGKLKENNHCHVACSALITDDLTDAIICARKIVKETQGMNYWQGWKKHC 179
Query: 202 QGKDLTEWVDGCD 214
+G+DL+EW GC+
Sbjct: 180 EGRDLSEWKKGCE 192
>gi|73088987 lysozyme-like 2 [Homo sapiens]
Length = 194
Score = 155 bits (391), Expect = 3e-38
Identities = 74/188 (39%), Positives = 112/188 (59%), Gaps = 4/188 (2%)
Query: 30 VSCLSSQSSALSQSGGGSTSAAGIEARSRALRRRWCPAGIMLL---ALVCLLSCLLPSSE 86
+SCLS + S S ST + A +R L ++C + + ++ L+ CL+ +E
Sbjct: 6 LSCLSPTKWS-SVSSADSTEKSASAAGTRNLPFQFCLRQALRMKAAGILTLIGCLVTGAE 64
Query: 87 AKLYGRCELARVLHDFGLDGYRGYSLADWVCLAYFTSGFNAAALDYEADGSTNNGIFQIN 146
+K+Y RC+LA++ GLD Y G+SL +W+C+AY+ SG+N A DGS + GIFQIN
Sbjct: 65 SKIYTRCKLAKIFSRAGLDNYWGFSLGNWICMAYYESGYNTTAQTVLDDGSIDYGIFQIN 124
Query: 147 SRRWCSNLTPNVPNVCRMYCSDLLNPNLKDTVICAMKITQEPQGLGYWEAWRHHCQGKDL 206
S WC N C + CS L+ +L D +ICA KI +E QG+ YW+ W+ HC+G+DL
Sbjct: 125 SFAWCRRGKLKENNHCHVACSALVTDDLTDAIICAKKIVKETQGMNYWQGWKKHCEGRDL 184
Query: 207 TEWVDGCD 214
++W C+
Sbjct: 185 SDWKKDCE 192
>gi|118498373 sperm acrosome associated 5 [Homo sapiens]
Length = 159
Score = 151 bits (381), Expect = 5e-37
Identities = 65/141 (46%), Positives = 92/141 (65%)
Query: 74 LVCLLSCLLPSSEAKLYGRCELARVLHDFGLDGYRGYSLADWVCLAYFTSGFNAAALDYE 133
+V L + ++ + +AK+Y RCELA L GL+GY+GY + DW+C+A++ SGF+ A +D+
Sbjct: 8 VVTLATLMVVTVDAKIYERCELAARLERAGLNGYKGYGVGDWLCMAHYESGFDTAFVDHN 67
Query: 134 ADGSTNNGIFQINSRRWCSNLTPNVPNVCRMYCSDLLNPNLKDTVICAMKITQEPQGLGY 193
DGS+ GIFQ+NS WC N N+C M C DLLN ++ D + CA +I GL
Sbjct: 68 PDGSSEYGIFQLNSAWWCDNGITPTKNLCHMDCHDLLNRHILDDIRCAKQIVSSQNGLSA 127
Query: 194 WEAWRHHCQGKDLTEWVDGCD 214
W +WR HC G DL+EW+ GCD
Sbjct: 128 WTSWRLHCSGHDLSEWLKGCD 148
>gi|120952755 sperm acrosome associated 5B [Homo sapiens]
Length = 159
Score = 151 bits (381), Expect = 5e-37
Identities = 65/141 (46%), Positives = 92/141 (65%)
Query: 74 LVCLLSCLLPSSEAKLYGRCELARVLHDFGLDGYRGYSLADWVCLAYFTSGFNAAALDYE 133
+V L + ++ + +AK+Y RCELA L GL+GY+GY + DW+C+A++ SGF+ A +D+
Sbjct: 8 VVTLATLMVVTVDAKIYERCELAARLERAGLNGYKGYGVGDWLCMAHYESGFDTAFVDHN 67
Query: 134 ADGSTNNGIFQINSRRWCSNLTPNVPNVCRMYCSDLLNPNLKDTVICAMKITQEPQGLGY 193
DGS+ GIFQ+NS WC N N+C M C DLLN ++ D + CA +I GL
Sbjct: 68 PDGSSEYGIFQLNSAWWCDNGITPTKNLCHMDCHDLLNRHILDDIRCAKQIVSSQNGLSA 127
Query: 194 WEAWRHHCQGKDLTEWVDGCD 214
W +WR HC G DL+EW+ GCD
Sbjct: 128 WTSWRLHCSGHDLSEWLKGCD 148
>gi|4557894 lysozyme precursor [Homo sapiens]
Length = 148
Score = 147 bits (370), Expect = 9e-36
Identities = 71/144 (49%), Positives = 97/144 (67%), Gaps = 3/144 (2%)
Query: 73 ALVCL-LSCLLPSSEAKLYGRCELARVLHDFGLDGYRGYSLADWVCLAYFTSGFNAAALD 131
AL+ L L L + + K++ RCELAR L G+DGYRG SLA+W+CLA + SG+N A +
Sbjct: 3 ALIVLGLVLLSVTVQGKVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATN 62
Query: 132 YEA-DGSTNNGIFQINSRRWCSN-LTPNVPNVCRMYCSDLLNPNLKDTVICAMKITQEPQ 189
Y A D ST+ GIFQINSR WC++ TP N C + CS LL N+ D V CA ++ ++PQ
Sbjct: 63 YNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQ 122
Query: 190 GLGYWEAWRHHCQGKDLTEWVDGC 213
G+ W AWR+ CQ +D+ ++V GC
Sbjct: 123 GIRAWVAWRNRCQNRDVRQYVQGC 146
>gi|9966905 lysozyme-like 6 [Homo sapiens]
Length = 148
Score = 139 bits (349), Expect = 2e-33
Identities = 63/140 (45%), Positives = 88/140 (62%)
Query: 74 LVCLLSCLLPSSEAKLYGRCELARVLHDFGLDGYRGYSLADWVCLAYFTSGFNAAALDYE 133
L+ L+S L ++A L RC+LA+VL LDG+ GYSL+DW+CLA+ S FN + ++
Sbjct: 6 LIYLVSSFLALNQASLISRCDLAQVLQLEDLDGFEGYSLSDWLCLAFVESKFNISKINEN 65
Query: 134 ADGSTNNGIFQINSRRWCSNLTPNVPNVCRMYCSDLLNPNLKDTVICAMKITQEPQGLGY 193
ADGS + G+FQINS WC++ N+C + C DLLNPNL + CA +I +G+
Sbjct: 66 ADGSFDYGLFQINSHYWCNDYKSYSENLCHVDCQDLLNPNLLAGIHCAKRIVSGARGMNN 125
Query: 194 WEAWRHHCQGKDLTEWVDGC 213
W WR HC G+ L W+ GC
Sbjct: 126 WVEWRLHCSGRPLFYWLTGC 145
>gi|21389465 lysozyme-like 4 [Homo sapiens]
Length = 146
Score = 127 bits (319), Expect = 7e-30
Identities = 64/142 (45%), Positives = 86/142 (60%), Gaps = 5/142 (3%)
Query: 74 LVCLLSCLLPSSEAKLYGRCELARVLHDFGLDGYRGYSLADWVCLAYFTSGFNAAAL-DY 132
++ LL L+ S A + GRC +A+ LHD GLD + GYSL +WVCLAYF S FN A+ +
Sbjct: 6 VLSLLGYLVVPSGAYILGRCTVAKKLHDGGLDYFEGYSLENWVCLAYFESKFNPMAIYEN 65
Query: 133 EADGSTNNGIFQINSRRWCSNLTPNVPNVCRMYCSDLLNPNLKDTVICAMKITQEPQGLG 192
+G T G+FQ+ WC + + N C M CS LLNPNL+ T+ CA I + +G+G
Sbjct: 66 TREGYTGFGLFQMRGSDWCGD---HGRNRCHMSCSALLNPNLEKTIKCAKTIVKGKEGMG 122
Query: 193 YWEAWRHHCQGKD-LTEWVDGC 213
W W +CQ D L W+DGC
Sbjct: 123 AWPTWSRYCQYSDTLARWLDGC 144
>gi|4504947 lactalbumin, alpha- precursor [Homo sapiens]
Length = 142
Score = 89.4 bits (220), Expect = 2e-18
Identities = 48/135 (35%), Positives = 82/135 (60%), Gaps = 6/135 (4%)
Query: 77 LLSCLLPSSEAKLYGRCELARVLHDFGLDGYRGYSLADWVCLAYFTSGFNAAALDYEADG 136
L+ L P+ AK + +CEL+++L D +DGY G +L + +C + TSG++ A+ E +
Sbjct: 9 LVGILFPAILAKQFTKCELSQLLKD--IDGYGGIALPELICTMFHTSGYDTQAI-VENNE 65
Query: 137 STNNGIFQINSRRWC-SNLTPNVPNVCRMYCSDLLNPNLKDTVICAMKITQEPQGLGYWE 195
ST G+FQI+++ WC S+ P N+C + C L+ ++ D ++CA KI + +G+ YW
Sbjct: 66 STEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKIL-DIKGIDYWL 124
Query: 196 AWRHHCQGKDLTEWV 210
A + C K L +W+
Sbjct: 125 AHKALCTEK-LEQWL 138
>gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]
Length = 1302
Score = 33.9 bits (76), Expect = 0.11
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 15 SSPVSSPSVSGPRRLVSCLSSQSSALSQSGGGSTSAAGIEARSRALR-----RRWCPAGI 69
S PV PS++ P R S L+ S+ LS S +AAG + S R W +G+
Sbjct: 285 SVPVMGPSLASPSRAASQLAVPSTPLSPHSAASGTAAGSQPSSPRYRPYTVTHPWASSGV 344
Query: 70 MLLA 73
+L+
Sbjct: 345 SILS 348
>gi|239743315 PREDICTED: hypothetical protein XP_002342820 [Homo
sapiens]
Length = 248
Score = 32.7 bits (73), Expect = 0.24
Identities = 33/107 (30%), Positives = 40/107 (37%), Gaps = 21/107 (19%)
Query: 4 ALRGAPLIRVHSSPVSSPSVSGPRRLVSCLSSQSSALSQSGGGSTSAAGIEARSRALRRR 63
A G P R SP+ SV PR +S S +GGG TS RSR R+
Sbjct: 97 ARAGVPQTRAPGSPLPLGSVPDPR------CDTASLPSPAGGGRTSCWAPGKRSRTRRKS 150
Query: 64 W-----CPAGIMLLALVCLLS----------CLLPSSEAKLYGRCEL 95
W AG + LS L S+ A + GRC L
Sbjct: 151 WRKVARTTAGHARTERLSALSRAPRWARSVCALCSSTSASVCGRCSL 197
>gi|239508997 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 32.7 bits (73), Expect = 0.24
Identities = 33/107 (30%), Positives = 40/107 (37%), Gaps = 21/107 (19%)
Query: 4 ALRGAPLIRVHSSPVSSPSVSGPRRLVSCLSSQSSALSQSGGGSTSAAGIEARSRALRRR 63
A G P R SP+ SV PR +S S +GGG TS RSR R+
Sbjct: 97 ARAGVPQTRAPGSPLPLGSVPDPR------CDTASLPSPAGGGRTSCWAPGKRSRTRRKS 150
Query: 64 W-----CPAGIMLLALVCLLS----------CLLPSSEAKLYGRCEL 95
W AG + LS L S+ A + GRC L
Sbjct: 151 WRKVARTTAGHARTERLSALSRAPRWARSVCALCSSTSASVCGRCSL 197
>gi|190341091 feline leukemia virus subgroup C cellular receptor
family, member 2 [Homo sapiens]
Length = 526
Score = 32.3 bits (72), Expect = 0.31
Identities = 41/125 (32%), Positives = 57/125 (45%), Gaps = 20/125 (16%)
Query: 3 SALRGAPLIRVHSSPVSSPSVS-GPRRLVSCLSS-QSSALSQ-SGGGSTSAAGIEARS-- 57
SAL+ P + VH S PSVS P V SS SAL+Q SG S++G E S
Sbjct: 19 SALQADPSVSVHPSVSVHPSVSINPSVSVHPSSSAHPSALAQPSGLAHPSSSGPEDLSVI 78
Query: 58 RALRRRWCPAGIMLLALVCLLSC--LLPSSEAKLYGRCELARVLHDFGLDGYRGYSLADW 115
+ RRRW A+V + SC + S + YG +H +G+ + DW
Sbjct: 79 KVSRRRW--------AVVLVFSCYSMCNSFQWIQYGSINNI-FMHFYGVSAF----AIDW 125
Query: 116 VCLAY 120
+ + Y
Sbjct: 126 LSMCY 130
>gi|46195763 metastasis suppressor 1-like [Homo sapiens]
Length = 747
Score = 31.6 bits (70), Expect = 0.53
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 1 MVSALRGAPLIRVHSSPVSSPSVSGPRRLVSCLSSQSSALSQSGGGSTSAAGIEARS 57
++ L+G+ + +P SSPS S R+ C S+ SS+ S GGG+ G + S
Sbjct: 245 VIKDLKGSDYSWSYQTPPSSPSSSSSRKSSMC-SAPSSSSSAKGGGAPWPGGAQTYS 300
>gi|66773086 SH3-binding kinase 1 [Homo sapiens]
Length = 424
Score = 30.0 bits (66), Expect = 1.5
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 1 MVSALRGAPLIRVHSSPVSSPSVSGPRRLVSCLSSQSSALSQSGGGSTSA 50
+ S LR P R P P +GP RL + + + L++SG GS A
Sbjct: 317 LTSELRRRPSHRARKPPGDRPPAAGPLRLEAPGPLKRTVLTESGSGSRPA 366
>gi|239757230 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 29.3 bits (64), Expect = 2.6
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 15 SSPVSSPSVSGPRRLVSCLSSQSSALSQSGGGSTSAAGIEARSRALRRRWCPAG 68
S P+ +P+ RL+S ++QS+ Q+GGG + G +R RR W G
Sbjct: 83 SRPMGAPACRR-HRLLSRRAAQSTNRGQAGGGRRAHGGGVGSARLARRVWREQG 135
>gi|239751738 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 29.3 bits (64), Expect = 2.6
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 15 SSPVSSPSVSGPRRLVSCLSSQSSALSQSGGGSTSAAGIEARSRALRRRWCPAG 68
S P+ +P+ RL+S ++QS+ Q+GGG + G +R RR W G
Sbjct: 83 SRPMGAPACRR-HRLLSRRAAQSTNRGQAGGGRRAHGGGVGSARLARRVWREQG 135
>gi|239746239 PREDICTED: hypothetical protein XP_002343711 [Homo
sapiens]
Length = 144
Score = 29.3 bits (64), Expect = 2.6
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 15 SSPVSSPSVSGPRRLVSCLSSQSSALSQSGGGSTSAAGIEARSRALRRRWCPAG 68
S P+ +P+ RL+S ++QS+ Q+GGG + G +R RR W G
Sbjct: 83 SRPMGAPACRR-HRLLSRRAAQSTNRGQAGGGRRAHGGGVGSARLARRVWREQG 135
>gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens]
Length = 587
Score = 28.9 bits (63), Expect = 3.5
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 7/99 (7%)
Query: 14 HSSPVSSPSVSGPRRLVSCLSSQSSALSQSGGGSTSAAGIEARSRALRRRWCPAGIMLLA 73
+SSP S + P S S+ S S S GST + + W +A
Sbjct: 495 YSSPRSPDTTLSPASTTSSGVSEESTTSHSRPGSTHTTAFPGSTTMPGQHW-------IA 547
Query: 74 LVCLLSCLLPSSEAKLYGRCELARVLHDFGLDGYRGYSL 112
+ C L ++ ++Y ELA++ + Y SL
Sbjct: 548 THNTVPCRLYNTSGRIYHLPELAKLKGHYACTSYYHISL 586
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 28.9 bits (63), Expect = 3.5
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 3 SALRGAPLIRVHSSPVSSPSVSGPRRLVSCLSSQSSAL 40
SA G+P +R S P SSP + GP C ++ SS+L
Sbjct: 2785 SASPGSPSVRSMSGPESSPPIGGP-----CEAAPSSSL 2817
>gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]
Length = 659
Score = 28.9 bits (63), Expect = 3.5
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 12 RVHSSPVSSPSVSGPRRLVSCLSSQSSALSQSGGGSTSAAGIEARSR 58
RV S P S+ + G + S+ +++ S S GGSTS++ E+R +
Sbjct: 559 RVRSDPPSTGNHVGLPIYIPAFSNGTNSYSSSNGGSTSSSPPESRRK 605
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 28.5 bits (62), Expect = 4.5
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 14 HSSPVSSPSVSGPRRLVSCLSSQSSALSQSGGGSTSAA 51
HSSP S+ + P + SSQ S S S GST A
Sbjct: 3666 HSSPGSTDTTLLPASTTTSGSSQESTTSHSSSGSTDTA 3703
>gi|4503483 eukaryotic translation elongation factor 2 [Homo
sapiens]
Length = 858
Score = 28.5 bits (62), Expect = 4.5
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 58 RALRRRWCPAGIMLLALVCLLSCLLPSSEAKLYGRCEL 95
+A+ RRW PAG LL ++ + LPS RCEL
Sbjct: 337 KAVMRRWLPAGDALLQMITI---HLPSPVTAQKYRCEL 371
>gi|4557595 forkhead box F2 [Homo sapiens]
Length = 444
Score = 28.5 bits (62), Expect = 4.5
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
Query: 3 SALRGAPLIRVHSSPVSSPSVSGPRRLVSCLSSQSSALSQSGGGSTSA--AGIEARSRAL 60
+A AP SS SS S + + S+ S+A +GGG A G + S L
Sbjct: 36 AAAAAAPETTSSSSSSSSASCASSSSSSNSASAPSAACKSAGGGGAGAGSGGAKKASSGL 95
Query: 61 RRRWCPAGIMLLALVCLLSCLLPSSEAKLYGRCELARVLHDFGLDGYRGY 110
RR P +AL+ + PS L + + F Y+G+
Sbjct: 96 RRPEKPP-YSYIALIVMAIQSSPSKRLTLSEIYQFLQARFPFFRGAYQGW 144
>gi|164565408 common-site lymphoma/leukemia guanine nucleotide
exchange factor [Homo sapiens]
Length = 1386
Score = 28.5 bits (62), Expect = 4.5
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 2 VSALRGAPLIRVHSSPVSSPSVSGP------RRLVSCLSSQSSALSQSGGGSTSAA 51
V+ L + L HS P SS + GP R L + SQS A Q GG AA
Sbjct: 1248 VARLESSDLTPPHSPPPSSRQLLGPNAAALSRYLAASYISQSLARRQGPGGGAPAA 1303
>gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1
[Homo sapiens]
Length = 2564
Score = 28.5 bits (62), Expect = 4.5
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 26/98 (26%)
Query: 44 GGGSTSAAGIEARSRALRRRWCPAGIMLLALVCLLSCLLPSSEAKLYGRCELARVLHDFG 103
G + G+ R+ + RRRW L + A+ R + AR LH FG
Sbjct: 735 GADTVHLVGLAERAASARRRWQR---------------LEEAAARRERRLQEARALHQFG 779
Query: 104 --LDGYRGYSLADWVCLAYFTSGFNAAALDYEADGSTN 139
LDG L DW+ AY AAA D+ D +++
Sbjct: 780 ADLDG-----LLDWLRDAYRL----AAAGDFGHDEASS 808
>gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens]
Length = 398
Score = 28.5 bits (62), Expect = 4.5
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 13/57 (22%)
Query: 7 GAPLIRVHSSPVSSPSVSGPRRLVSCLSSQSSALSQSGGGSTSAAGIEARSRALRRR 63
G PL SSP S+P++ G R L+ C SQ LS RSR RRR
Sbjct: 233 GTPLPWASSSPTSTPALGGRRGLLRC-RSQPCVLSGK------------RSRRKRRR 276
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 28.1 bits (61), Expect = 5.9
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 7 GAPLIRVHSSPVSSPSVSGPRRLVSCLSSQSSALSQSGGGSTSAAGIEARSRALRR 62
G P +H+S SS S S S SS SS+ S S S+S++ + S + +
Sbjct: 140 GDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSK 195
>gi|14149669 mitogen-activated protein kinase kinase kinase 7
interacting protein 2 [Homo sapiens]
Length = 693
Score = 28.1 bits (61), Expect = 5.9
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 17 PVSSPSVSGPRRLVSCLSSQSSALSQ 42
P+SSP+ S P + S SSQSSA SQ
Sbjct: 286 PISSPTTSQPPTIHSSGSSQSSAHSQ 311
>gi|4826894 phosphodiesterase 1C [Homo sapiens]
Length = 634
Score = 27.7 bits (60), Expect = 7.7
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 112 LADWVC-LAYFTSGFNAAALDYEADGSTNNGIFQINSR 148
+A+W+ L F F+AA DYE G+TNN F I +R
Sbjct: 249 VANWLTELEIFAIIFSAAIHDYEHTGTTNN--FHIQTR 284
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,934,906
Number of Sequences: 37866
Number of extensions: 384419
Number of successful extensions: 1360
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1289
Number of HSP's gapped (non-prelim): 79
length of query: 215
length of database: 18,247,518
effective HSP length: 98
effective length of query: 117
effective length of database: 14,536,650
effective search space: 1700788050
effective search space used: 1700788050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.