Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LALBA Sequence: fasta or formatted (142aa) NCBI GI: 4504947
Description:

lactalbumin, alpha- precursor

Referenced in:

Galactose and Lactose
Mammary Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9          7           1
 C cysteine            5.6          8           1
 D aspartate           8.5         12           3
 E glutamate           5.6          8           1
 F phenylalanine       5.6          8           2
 G glycine             4.9          7           2
 H histidine           1.4          2           1
 I isoleucine          9.9         14           1
 K lysine              8.5         12           2
 L leucine            12.7         18           2
 M methionine          2.1          3           1
 N asparagine          2.8          4           2
 P proline             2.8          4           1
 Q glutamine           4.9          7           1
 R arginine            1.4          2           1
 S serine              5.6          8           2
 T threonine           4.9          7           1
 V valine              2.8          4           1
 W tryptophan          2.1          3           1
 Y tyrosine            2.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lactalbumin, alpha- precursor 
LYZ                   0.260   lysozyme precursor 
LYZL2                 0.245   lysozyme-like 2 
LYZL1                 0.245   lysozyme-like 1 
SPACA3                0.234   sperm acrosome associated 3 
SPACA5                0.209   sperm acrosome associated 5 
SPACA5B               0.209   sperm acrosome associated 5B 
LYZL6                 0.187   lysozyme-like 6 
LYZL4                 0.132   lysozyme-like 4 
KIAA2022              0.022   hypothetical protein LOC340533 
TRPM6                 0.011   transient receptor potential cation channel, subfami...
UBE2R2                0.011   ubiquitin-conjugating enzyme UBC3B 
PARP4                 0.007   poly (ADP-ribose) polymerase family, member 4 [Homo...
TMPRSS3               0.007   transmembrane protease, serine 3 isoform 1 
LOC100129596          0.004   PREDICTED: hypothetical protein 
LOC100129596          0.004   PREDICTED: hypothetical protein 
LOC100129596          0.004   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press