Guide to the Human Genome
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Name: TNFAIP2 Sequence: fasta or formatted (654aa) NCBI GI: 26051240
Description:

tumor necrosis factor, alpha-induced protein 2

Referenced in:

TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         79           6
 C cysteine            1.1          7           1
 D aspartate           3.2         21           1
 E glutamate          10.1         66           4
 F phenylalanine       3.1         20           1
 G glycine             5.7         37           2
 H histidine           2.1         14           1
 I isoleucine          4.0         26           2
 K lysine              5.0         33           4
 L leucine            13.6         89           3
 M methionine          1.5         10           1
 N asparagine          2.6         17           2
 P proline             5.7         37           3
 Q glutamine           5.7         37           4
 R arginine            7.0         46           2
 S serine              5.7         37           2
 T threonine           3.7         24           1
 V valine              5.4         35           2
 W tryptophan          1.1          7           1
 Y tyrosine            1.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor, alpha-induced protein 2 [Homo... 
C14orf73              0.099   hypothetical protein LOC91828 
EXOC3L                0.097   exocyst complex component 3-like 
EXOC3                 0.096   Sec6 protein 
EXOC3L2               0.073   exocyst complex component 3-like 2 
MARCKS                0.011   myristoylated alanine-rich protein kinase C substra...
ZNHIT2                0.010   zinc finger, HIT domain containing 2 
CCDC96                0.010   coiled-coil domain containing 96 
LOC100292447          0.010   PREDICTED: similar to coiled-coil domain containing...
FBRS                  0.010   fibrosin 
UPF3A                 0.009   UPF3 regulator of nonsense transcripts homolog A iso...
UPF3A                 0.009   UPF3 regulator of nonsense transcripts homolog A iso...
LOC100293596          0.008   PREDICTED: similar to mucin 
SMARCC2               0.008   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.008   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.008   SWI/SNF-related matrix-associated actin-dependent r...
RRBP1                 0.008   ribosome binding protein 1 
RRBP1                 0.008   ribosome binding protein 1 
MYO10                 0.008   myosin X 
RIN1                  0.008   ras inhibitor RIN1 
RNF19B                0.008   ring finger protein 19B isoform a 
RNF19B                0.008   ring finger protein 19B isoform b 
KIAA1751              0.008   hypothetical protein LOC85452 
MSN                   0.008   moesin 
METAP2                0.008   methionyl aminopeptidase 2 
CCDC88B               0.008   coiled-coil domain containing 88 
SLMAP                 0.008   sarcolemma associated protein 
BASP1                 0.007   brain abundant, membrane attached signal protein 1 [...
CROCC                 0.007   ciliary rootlet coiled-coil 
SFRS8                 0.007   splicing factor, arginine/serine-rich 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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