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Search of human proteins with 25777612
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|25777612 proteasome 26S non-ATPase subunit 3 [Homo sapiens]
(534 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|25777612 proteasome 26S non-ATPase subunit 3 [Homo sapiens] 1052 0.0
gi|23238222 COP9 constitutive photomorphogenic homolog subunit 3... 69 1e-11
gi|82546824 forkhead box K1 [Homo sapiens] 40 0.005
gi|188219577 ring finger protein 19B isoform a [Homo sapiens] 38 0.026
gi|188219579 ring finger protein 19B isoform b [Homo sapiens] 38 0.026
gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens] 37 0.059
gi|28269693 xylosyltransferase I [Homo sapiens] 36 0.10
gi|239755386 PREDICTED: hypothetical protein XP_002344548 [Homo ... 36 0.10
gi|239749860 PREDICTED: hypothetical protein XP_002347189 [Homo ... 36 0.10
gi|21361337 eukaryotic translation initiation factor 5 [Homo sap... 36 0.10
gi|37537716 eukaryotic translation initiation factor 5 [Homo sap... 36 0.10
gi|38788260 bromodomain PHD finger transcription factor isoform ... 35 0.13
gi|38788274 bromodomain PHD finger transcription factor isoform ... 35 0.13
gi|94536852 transmembrane cochlear-expressed protein 2 [Homo sap... 35 0.13
gi|22779860 forkhead box L1 [Homo sapiens] 35 0.13
gi|77917617 hypothetical protein LOC54463 isoform 1 [Homo sapiens] 35 0.17
gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1 ... 35 0.22
gi|4502739 cyclin-dependent kinase 5, regulatory subunit 2 [Homo... 35 0.22
gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1 ... 35 0.22
gi|30795231 brain abundant, membrane attached signal protein 1 [... 34 0.29
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 34 0.29
gi|55956916 myosin IE [Homo sapiens] 34 0.29
gi|172072597 retinoblastoma-like 2 (p130) [Homo sapiens] 34 0.38
gi|239757474 PREDICTED: similar to hCG1785205 [Homo sapiens] 34 0.38
gi|239751984 PREDICTED: similar to hCG1785205 [Homo sapiens] 34 0.38
gi|239746471 PREDICTED: hypothetical protein XP_002343764 [Homo ... 34 0.38
gi|188219563 hypothetical protein LOC126731 [Homo sapiens] 34 0.38
gi|226437599 V-set and transmembrane domain containing 2B [Homo ... 33 0.50
gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens] 33 0.50
gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3 [... 33 0.50
>gi|25777612 proteasome 26S non-ATPase subunit 3 [Homo sapiens]
Length = 534
Score = 1052 bits (2720), Expect = 0.0
Identities = 534/534 (100%), Positives = 534/534 (100%)
Query: 1 MKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAAA 60
MKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAAA
Sbjct: 1 MKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAAA 60
Query: 61 EHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVQGF 120
EHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVQGF
Sbjct: 61 EHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVQGF 120
Query: 121 FTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIFMMNSKR 180
FTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIFMMNSKR
Sbjct: 121 FTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIFMMNSKR 180
Query: 181 YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL 240
YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL
Sbjct: 181 YKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATL 240
Query: 241 RHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL 300
RHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL
Sbjct: 241 RHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQL 300
Query: 301 EYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPY 360
EYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPY
Sbjct: 301 EYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPY 360
Query: 361 FLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLA 420
FLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLA
Sbjct: 361 FLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLA 420
Query: 421 DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI 480
DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI
Sbjct: 421 DIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRI 480
Query: 481 SFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 534
SFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP
Sbjct: 481 SFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 534
>gi|23238222 COP9 constitutive photomorphogenic homolog subunit 3
[Homo sapiens]
Length = 423
Score = 68.9 bits (167), Expect = 1e-11
Identities = 54/231 (23%), Positives = 103/231 (44%), Gaps = 9/231 (3%)
Query: 288 YLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQ 347
Y YY G I + A A+ + ++ K ++V +LLG++ +
Sbjct: 184 YYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPK 243
Query: 348 FRQPSLKRSLMP----YFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVI 403
+ + R + P Y L Q T N ++ ++++ E F D L+ + ++
Sbjct: 244 YTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLY 303
Query: 404 KTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEM 463
K ++ ++ ++ +SL D+A ++QL P++AE V I DG I ASIN + G V +
Sbjct: 304 KKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDN 363
Query: 464 IDIYSTREPQLAFHQRISFCLDIHNMSVKAM----RFPPKSYNKDLESAEE 510
+ Y+ Q + C+++ + +KAM P+ K + S E+
Sbjct: 364 PEKYNNPAMLHNIDQEMLKCIEL-DERLKAMDQEITVNPQFVQKSMGSQED 413
>gi|82546824 forkhead box K1 [Homo sapiens]
Length = 733
Score = 40.0 bits (92), Expect = 0.005
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 15 AKPPPGGGEQEPPP-PPAPQDVEMKEEAATGGGSTGEADGKTAAAAAEHSQRELDTVTLE 73
A PPP + +PPP PP P + A G GS+G + G + +A + L
Sbjct: 37 AAPPPAPAQPQPPPGPPPPPPPPLPPGAIAGAGSSGGSSGVSGDSAVAGAAPALVAAAAA 96
Query: 74 DIKEHVKQLEKAVSGKEPRFVLR 96
+++ + G+E F++R
Sbjct: 97 SVRQSPGPALARLEGREFEFLMR 119
>gi|188219577 ring finger protein 19B isoform a [Homo sapiens]
Length = 732
Score = 37.7 bits (86), Expect = 0.026
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 8 RRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAAAE 61
R R +A+PPP + PPP PAP + A EA+ + AAAAAE
Sbjct: 47 RARAKPQAEPPPPAAQ--PPPAPAPAAAQGPPPEALPAEPAAEAEAEAAAAAAE 98
>gi|188219579 ring finger protein 19B isoform b [Homo sapiens]
Length = 587
Score = 37.7 bits (86), Expect = 0.026
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 8 RRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAAAE 61
R R +A+PPP + PPP PAP + A EA+ + AAAAAE
Sbjct: 47 RARAKPQAEPPPPAAQ--PPPAPAPAAAQGPPPEALPAEPAAEAEAEAAAAAAE 98
>gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]
Length = 602
Score = 36.6 bits (83), Expect = 0.059
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 3 QEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAAT-----------GGGSTGEA 51
++G+ GAD P Q+PPPPPAP + ++ GGG G++
Sbjct: 20 EKGAHPSGGADDVAKKPPPAPQQPPPPPAPHPQQHPQQHPQNQAHGKGGHRGGGGGGGKS 79
Query: 52 DGKTAAAAA 60
++A+AA
Sbjct: 80 SSSSSASAA 88
>gi|28269693 xylosyltransferase I [Homo sapiens]
Length = 959
Score = 35.8 bits (81), Expect = 0.10
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 5 GSARRRGADKAKPPPGGGEQEPPPPPAP----QDVEMKEEAATGGGSTGEADG 53
G+ RRG GGGEQ PPP PAP +D+ + AA GGG G G
Sbjct: 41 GAGERRGGAAV----GGGEQ-PPPAPAPRRERRDLPAEPAAARGGGGGGGGGG 88
>gi|239755386 PREDICTED: hypothetical protein XP_002344548 [Homo
sapiens]
Length = 111
Score = 35.8 bits (81), Expect = 0.10
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 8 RRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAAA 60
R+R +K PP G + PP P P+ V + TGG G AAAAA
Sbjct: 42 RQRNGEKTNNPPNGCLRRRPPEPGPRGVRRRR---TGGLKPARVPGCAAAAAA 91
>gi|239749860 PREDICTED: hypothetical protein XP_002347189 [Homo
sapiens]
Length = 111
Score = 35.8 bits (81), Expect = 0.10
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 8 RRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAAA 60
R+R +K PP G + PP P P+ V + TGG G AAAAA
Sbjct: 42 RQRNGEKTNNPPNGCLRRRPPEPGPRGVRRRR---TGGLKPARVPGCAAAAAA 91
>gi|21361337 eukaryotic translation initiation factor 5 [Homo
sapiens]
Length = 431
Score = 35.8 bits (81), Expect = 0.10
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 2 KQEGSARRRGADKAKPPPGGGEQEPPPP------PAPQDVEMKEEAATGGGSTGEADGKT 55
K++ R+G DK E PPPP P P +E +E+ G +T EA +
Sbjct: 156 KEKEKKNRKGKDKENGSVSSSETPPPPPPPNEINPPPHTMEEEEDDDWGEDTTEEAQRRR 215
Query: 56 AAAAAEHSQRELDTVTLED-----IKEHVKQLEKAVSGKEPRFVL 95
++H++ +TL D I+E V L V K+ V+
Sbjct: 216 MDEISDHAK----VLTLSDDLERTIEERVNILFDFVKKKKEEGVI 256
>gi|37537716 eukaryotic translation initiation factor 5 [Homo
sapiens]
Length = 431
Score = 35.8 bits (81), Expect = 0.10
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 2 KQEGSARRRGADKAKPPPGGGEQEPPPP------PAPQDVEMKEEAATGGGSTGEADGKT 55
K++ R+G DK E PPPP P P +E +E+ G +T EA +
Sbjct: 156 KEKEKKNRKGKDKENGSVSSSETPPPPPPPNEINPPPHTMEEEEDDDWGEDTTEEAQRRR 215
Query: 56 AAAAAEHSQRELDTVTLED-----IKEHVKQLEKAVSGKEPRFVL 95
++H++ +TL D I+E V L V K+ V+
Sbjct: 216 MDEISDHAK----VLTLSDDLERTIEERVNILFDFVKKKKEEGVI 256
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 35.4 bits (80), Expect = 0.13
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 14/103 (13%)
Query: 2 KQEGSARRRGA---------DKAKPPPGGGEQE---PPPPPAPQDVEMKEEAATGGGS-- 47
+ GS+R R A + P GG PPPPPAP GGG
Sbjct: 42 RHRGSSRGRWAAAQAEVAPKTRLSSPRGGSSSRRKPPPPPPAPPSTSAPGRGGRGGGGGR 101
Query: 48 TGEADGKTAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKE 90
TG G A ++R ++ V +D + ++ E+ + +E
Sbjct: 102 TGGGGGGGHLARTTAARRAVNKVVYDDHESEEEEEEEDMVSEE 144
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 35.4 bits (80), Expect = 0.13
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 14/103 (13%)
Query: 2 KQEGSARRRGA---------DKAKPPPGGGEQE---PPPPPAPQDVEMKEEAATGGGS-- 47
+ GS+R R A + P GG PPPPPAP GGG
Sbjct: 42 RHRGSSRGRWAAAQAEVAPKTRLSSPRGGSSSRRKPPPPPPAPPSTSAPGRGGRGGGGGR 101
Query: 48 TGEADGKTAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKE 90
TG G A ++R ++ V +D + ++ E+ + +E
Sbjct: 102 TGGGGGGGHLARTTAARRAVNKVVYDDHESEEEEEEEDMVSEE 144
>gi|94536852 transmembrane cochlear-expressed protein 2 [Homo
sapiens]
Length = 906
Score = 35.4 bits (80), Expect = 0.13
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 1 MKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAAA 60
+K EG+ RRGA +++ GG P P Q + G GEA+ +T
Sbjct: 41 LKAEGTPGRRGAQRSQKERAGGSPSPGSPRRKQTGRRRHREELGEQERGEAE-RTCEGRR 99
Query: 61 EHSQR---ELDTVTLEDIKEHVKQLEKAVSGKEPR 92
+ +R + T + KE ++ EK+ K+PR
Sbjct: 100 KRDERASFQERTAAPKREKEIPRREEKSKRQKKPR 134
>gi|22779860 forkhead box L1 [Homo sapiens]
Length = 345
Score = 35.4 bits (80), Expect = 0.13
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 1 MKQEGSARRRGADKAKPPPGGGEQEPPPPPAP---QDVEMKEEAATGGGSTGEADGKTAA 57
M + G+ RRR K KP PG G E P A + E + EA +G G +G A + A
Sbjct: 132 MFENGNYRRR---KRKPKPGPGAPEAKRPRAETHQRSAEAQPEAGSGAGGSGPAISRLQA 188
Query: 58 AAA 60
A A
Sbjct: 189 APA 191
>gi|77917617 hypothetical protein LOC54463 isoform 1 [Homo
sapiens]
Length = 497
Score = 35.0 bits (79), Expect = 0.17
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 12 ADKAKPPPGGGEQEPPPPPAPQ-----DVEMKEEAATGGGSTG------EADGKTAAA 58
A++ P P EQ PP PP PQ + +EEA G + G EA G+ AAA
Sbjct: 10 AEEGCPAPAAEEQAPPSPPPPQASPAERQQQEEEAQEAGAAEGAGLQVEEAAGRAAAA 67
>gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1
[Homo sapiens]
Length = 1288
Score = 34.7 bits (78), Expect = 0.22
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 16 KPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAAAEHSQRELDTVTLEDI 75
+P +E PPPP+P E G T ++ A AAE + ELD +LE+I
Sbjct: 7 QPSTARRREEGPPPPSPDGASSDAEPEPPSGRT-----ESPATAAETASEELDNRSLEEI 61
>gi|4502739 cyclin-dependent kinase 5, regulatory subunit 2 [Homo
sapiens]
Length = 367
Score = 34.7 bits (78), Expect = 0.22
Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 11 GADKAKPP-PGGGEQEPPPPPAPQ 33
G+ A+PP GGG+ PPPPPAPQ
Sbjct: 141 GSAAAQPPGSGGGKPPPPPPPAPQ 164
Score = 32.0 bits (71), Expect = 1.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 11 GADKAKPPPGGGEQEPPPPPAP 32
G A PPG G +PPPPP P
Sbjct: 140 GGSAAAQPPGSGGGKPPPPPPP 161
>gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1
[Homo sapiens]
Length = 1288
Score = 34.7 bits (78), Expect = 0.22
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 16 KPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAAAEHSQRELDTVTLEDI 75
+P +E PPPP+P E G T ++ A AAE + ELD +LE+I
Sbjct: 7 QPSTARRREEGPPPPSPDGASSDAEPEPPSGRT-----ESPATAAETASEELDNRSLEEI 61
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 34.3 bits (77), Expect = 0.29
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 2 KQEGSARRRGADKAKPPP--GGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAA 59
+++ +A + A KA+P G E + PP AP+ +E+AA G + GEA AAA
Sbjct: 72 EKDAAAAKEEAPKAEPEKTEGAAEAKAEPPKAPE----QEQAAPGPAAGGEAPKAAEAAA 127
Query: 60 A 60
A
Sbjct: 128 A 128
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 34.3 bits (77), Expect = 0.29
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 3 QEGSARRR----GADKAKPPPGGGEQEPPPPPA 31
QEG+ +R G + PPPGG Q+P PPPA
Sbjct: 252 QEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPA 284
Score = 29.6 bits (65), Expect = 7.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 2 KQEGSARRRGADKAKPPPGGGEQEPPPP 29
K +G + G +PPP G Q PPPP
Sbjct: 245 KPQGPPPQEGNKPQRPPPPGRPQGPPPP 272
>gi|55956916 myosin IE [Homo sapiens]
Length = 1108
Score = 34.3 bits (77), Expect = 0.29
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 4 EGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGE 50
+G+A R ++PPP GG +P P P PQ + K A T E
Sbjct: 1023 QGAAGVRRQTTSRPPPAGGRPKPQPKPKPQVPQCKALYAYDAQDTDE 1069
>gi|172072597 retinoblastoma-like 2 (p130) [Homo sapiens]
Length = 1139
Score = 33.9 bits (76), Expect = 0.38
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 19 PGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAAAEHSQR 65
P GG+Q PPPPP P +E G +A + + QR
Sbjct: 2 PSGGDQSPPPPPPPPAAAASDEEEEDDGEAEDAAPPAESPTPQIQQR 48
Score = 29.6 bits (65), Expect = 7.2
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 18 PPGGGEQEPPPPPAPQDVEMKEEAATGG 45
P GG + PPPPP P EE G
Sbjct: 2 PSGGDQSPPPPPPPPAAAASDEEEEDDG 29
>gi|239757474 PREDICTED: similar to hCG1785205 [Homo sapiens]
Length = 362
Score = 33.9 bits (76), Expect = 0.38
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 11 GADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTG-----EADGKTAAAAAEHSQR 65
G +K PPPG + P AP ++E TGG S G +A T A++ ++Q
Sbjct: 60 GTNKEAPPPGRNDSTLPSARAPPS-GLQEPLCTGGNSLGIPEESQASSPTLTASSPNAQD 118
Query: 66 ELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRR 107
T ++ KE +L + S P +L+AL + R
Sbjct: 119 GSGFATEDEDKEWPHRLAQQGS-LLPPILLQALWLTTGARHR 159
>gi|239751984 PREDICTED: similar to hCG1785205 [Homo sapiens]
Length = 362
Score = 33.9 bits (76), Expect = 0.38
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 11 GADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTG-----EADGKTAAAAAEHSQR 65
G +K PPPG + P AP ++E TGG S G +A T A++ ++Q
Sbjct: 60 GTNKEAPPPGRNDSTLPSARAPPS-GLQEPLCTGGNSLGIPEESQASSPTLTASSPNAQD 118
Query: 66 ELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRR 107
T ++ KE +L + S P +L+AL + R
Sbjct: 119 GSGFATEDEDKEWPHRLAQQGS-LLPPILLQALWLTTGARHR 159
>gi|239746471 PREDICTED: hypothetical protein XP_002343764 [Homo
sapiens]
Length = 362
Score = 33.9 bits (76), Expect = 0.38
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 11 GADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTG-----EADGKTAAAAAEHSQR 65
G +K PPPG + P AP ++E TGG S G +A T A++ ++Q
Sbjct: 60 GTNKEAPPPGRNDSTLPSTRAPPS-GLQEPLCTGGNSLGIPEESQASSPTLTASSPNAQD 118
Query: 66 ELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRR 107
T ++ KE +L + S P +L+AL + R
Sbjct: 119 GSGFATEDEDKEWPHRLAQQGS-LLPPILLQALWLTTGARHR 159
>gi|188219563 hypothetical protein LOC126731 [Homo sapiens]
Length = 270
Score = 33.9 bits (76), Expect = 0.38
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Query: 4 EGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGG-----GSTGEADGKTAAA 58
E SA + P P PPPP P E E A G G+A+ + A
Sbjct: 59 EDSASSESSGAGGPAPRCAPPSPPPPVEPATQEEAERRARGAPEEQDAEAGDAEAEDAED 118
Query: 59 AAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPR 92
AA + D + + ++ +K+ + EPR
Sbjct: 119 AALPALPVKDVEDKPEQQTRTRETDKSPTSTEPR 152
>gi|226437599 V-set and transmembrane domain containing 2B [Homo
sapiens]
Length = 285
Score = 33.5 bits (75), Expect = 0.50
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 12 ADKAKPPPGGGEQEPPP--PPAPQDVEMKEEAATGGGSTGEADGKTAAAAAEHS 63
A + PG G++ PPP PPA D + E AA T AAAA+ S
Sbjct: 188 ASRTTSEPGRGDKSPPPGSPPAAIDPAVPEAAAASAAHTPTTTVAAAAAASSAS 241
>gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens]
Length = 345
Score = 33.5 bits (75), Expect = 0.50
Identities = 20/46 (43%), Positives = 21/46 (45%), Gaps = 15/46 (32%)
Query: 17 PPPGGGEQEPPPPPA---------PQDVEMKEEAATGGGSTGEADG 53
PPP PPPPPA P D + KEEA GG G A G
Sbjct: 163 PPP------PPPPPAELKAEPGFEPADCKRKEEAGAPGGGAGMAAG 202
>gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3
[Homo sapiens]
Length = 650
Score = 33.5 bits (75), Expect = 0.50
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 3 QEGSARRRGADKAKPPPGGGEQEPPPPPAPQ 33
Q GS + + PPP Q+PPPPP PQ
Sbjct: 373 QAGSQQPPPQPQPPPPPPPASQQPPPPPPPQ 403
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,871,312
Number of Sequences: 37866
Number of extensions: 929459
Number of successful extensions: 11291
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 188
Number of HSP's that attempted gapping in prelim test: 9977
Number of HSP's gapped (non-prelim): 1256
length of query: 534
length of database: 18,247,518
effective HSP length: 107
effective length of query: 427
effective length of database: 14,195,856
effective search space: 6061630512
effective search space used: 6061630512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.