Guide to the Human Genome
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Name: LOC100290144 Sequence: fasta or formatted (111aa) NCBI GI: 239749860
Description:

PREDICTED: hypothetical protein XP_002347189

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         13           6
 C cysteine            4.5          5           2
 D aspartate           0.0          0           0
 E glutamate           5.4          6           1
 F phenylalanine       0.0          0           0
 G glycine            13.5         15           2
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              2.7          3           1
 L leucine             6.3          7           1
 M methionine          1.8          2           1
 N asparagine          4.5          5           2
 P proline            16.2         18           2
 Q glutamine           5.4          6           2
 R arginine           13.5         15           4
 S serine              2.7          3           1
 T threonine           3.6          4           1
 V valine              4.5          5           1
 W tryptophan          3.6          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347189 
LOC100291860          1.000   PREDICTED: hypothetical protein XP_002344548 
ABL1                  0.054   c-abl oncogene 1, receptor tyrosine kinase isoform a...
ABL1                  0.054   c-abl oncogene 1, receptor tyrosine kinase isoform b...
PSMD3                 0.050   proteasome 26S non-ATPase subunit 3 
LOC729240             0.041   PREDICTED: FLJ40296 protein family member 
PRR20                 0.041   proline rich 20 
LOC729250             0.041   hypothetical protein LOC729250 
LOC729246             0.041   hypothetical protein LOC729246 
LOC729240             0.041   hypothetical protein LOC729240 
LOC729233             0.041   hypothetical protein LOC729233 
ZFP91                 0.036   zinc finger protein 91 
LOXL1                 0.036   lysyl oxidase-like 1 preproprotein 
GLT8D4                0.036   glycosyltransferase 8 domain containing 4 
SYN1                  0.032   synapsin I isoform Ia 
SYN1                  0.032   synapsin I isoform Ib 
C10orf114             0.032   hypothetical protein LOC399726 
LOC100131591          0.032   PREDICTED: hypothetical protein 
LOC100291311          0.032   PREDICTED: hypothetical protein XP_002347439 
LOC100289410          0.032   PREDICTED: hypothetical protein XP_002344274 
STARD13               0.032   StAR-related lipid transfer (START) domain containin...
STARD13               0.032   StAR-related lipid transfer (START) domain containin...
STARD13               0.032   StAR-related lipid transfer (START) domain containin...
PRB1                  0.032   proline-rich protein BstNI subfamily 1 isoform 3 pre...
LOC100130255          0.027   PREDICTED: hypothetical protein 
LOC100130255          0.027   PREDICTED: hypothetical protein 
LOC100130255          0.027   PREDICTED: hypothetical protein 
ALPK3                 0.027   alpha-kinase 3 
C9orf47               0.027   hypothetical protein LOC286223 isoform 1 
BAHD1                 0.027   bromo adjacent homology domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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