Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MYO1E Sequence: fasta or formatted (1108aa) NCBI GI: 55956916
Description:

myosin IE

Referenced in:

Myosin
Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         56           2
 C cysteine            0.9         10           1
 D aspartate           4.9         54           2
 E glutamate           7.0         78           2
 F phenylalanine       4.4         49           1
 G glycine             6.8         75           3
 H histidine           2.3         25           2
 I isoleucine          6.4         71           2
 K lysine              7.9         88           2
 L leucine             8.3         92           3
 M methionine          2.3         26           1
 N asparagine          5.1         56           3
 P proline             4.8         53           4
 Q glutamine           6.1         68           2
 R arginine            5.7         63           3
 S serine              6.9         76           2
 T threonine           3.8         42           2
 V valine              5.8         64           2
 W tryptophan          1.1         12           2
 Y tyrosine            4.5         50           4
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   myosin IE 
MYO1F                 0.713   myosin IF 
MYO1B                 0.270   myosin IB isoform 1 
MYO1B                 0.270   myosin IB isoform 2 
MYO1B                 0.270   myosin IB isoform 1 
MYO1C                 0.263   myosin IC isoform b 
MYO1C                 0.263   myosin IC isoform a 
MYO1C                 0.263   myosin IC isoform c 
MYO1H                 0.251   myosin 1H 
MYO1A                 0.251   myosin IA 
MYO1D                 0.243   myosin ID 
MYO1G                 0.228   myosin IG 
MYO5C                 0.207   myosin VC 
MYO5B                 0.205   myosin VB 
MYO5A                 0.204   myosin VA isoform 2 
MYO5A                 0.204   myosin VA isoform 1 
MYO10                 0.203   myosin X 
MYO7A                 0.203   myosin VIIA isoform 2 
MYO7A                 0.203   myosin VIIA isoform 3 
MYO7A                 0.203   myosin VIIA isoform 1 
MYO7B                 0.197   myosin VIIB 
MYH9                  0.194   myosin, heavy polypeptide 9, non-muscle 
MYH11                 0.193   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.193   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH7                  0.192   myosin, heavy chain 7, cardiac muscle, beta 
MYH10                 0.192   myosin, heavy polypeptide 10, non-muscle 
MYO15A                0.192   myosin XV 
MYH11                 0.192   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.192   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH6                  0.187   myosin heavy chain 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press