Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 25470890
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
(378 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 819 0.0
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 759 0.0
gi|20373175 musashi 2 isoform a [Homo sapiens] 177 1e-44
gi|4505255 musashi 1 [Homo sapiens] 172 6e-43
gi|25121993 musashi 2 isoform b [Homo sapiens] 167 1e-41
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 162 6e-40
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 154 1e-37
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 154 1e-37
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ... 153 2e-37
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 152 5e-37
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ... 150 1e-36
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 145 4e-35
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 145 6e-35
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 143 3e-34
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 143 3e-34
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 142 4e-34
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 141 1e-33
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ... 140 1e-33
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ... 138 9e-33
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 137 2e-32
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 125 5e-29
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 125 6e-29
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 125 6e-29
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 98 1e-20
gi|6678271 TAR DNA binding protein [Homo sapiens] 94 2e-19
gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens] 93 4e-19
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens] 93 4e-19
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 80 2e-15
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 80 3e-15
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 79 9e-15
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 819 bits (2116), Expect = 0.0
Identities = 378/378 (100%), Positives = 378/378 (100%)
Query: 1 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD
Sbjct: 1 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
Query: 61 PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI 120
PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI
Sbjct: 61 PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI 120
Query: 121 PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG 180
PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG
Sbjct: 121 PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG 180
Query: 181 KKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG 240
KKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG
Sbjct: 181 KKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG 240
Query: 241 QAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPP 300
QAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPP
Sbjct: 241 QAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPP 300
Query: 301 PDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYGLGSYSPAPPG 360
PDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYGLGSYSPAPPG
Sbjct: 301 PDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYGLGSYSPAPPG 360
Query: 361 CGPHFVYSLMVRLSSDVA 378
CGPHFVYSLMVRLSSDVA
Sbjct: 361 CGPHFVYSLMVRLSSDVA 378
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 759 bits (1959), Expect = 0.0
Identities = 349/349 (100%), Positives = 349/349 (100%)
Query: 1 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD
Sbjct: 1 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
Query: 61 PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI 120
PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI
Sbjct: 61 PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI 120
Query: 121 PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG 180
PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG
Sbjct: 121 PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG 180
Query: 181 KKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG 240
KKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG
Sbjct: 181 KKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG 240
Query: 241 QAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPP 300
QAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPP
Sbjct: 241 QAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPP 300
Query: 301 PDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQY 349
PDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQY
Sbjct: 301 PDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQY 349
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 177 bits (450), Expect = 1e-44
Identities = 109/310 (35%), Positives = 159/310 (51%), Gaps = 51/310 (16%)
Query: 3 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62
N + GK+F+GGL W T+ ++LR YFS++GE+ +C++M+D TT +SRGFGFV F DP
Sbjct: 14 NDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPA 73
Query: 63 CVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPH 122
V VL H LD + IDPK PR QP+ +++ KIFVGG+
Sbjct: 74 SVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMV--------------TRTKKIFVGGLSA 119
Query: 123 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK 182
N ++++YF++FG V + ++++D R RGFGF+TFE+E V++ +HFH+I K
Sbjct: 120 NTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKM 179
Query: 183 VEVKRAEPRD------SKSQAPGQPGASQ-----WGSRVVPNAANGWAGQPPPTWQQGYG 231
VE K+A+P++ ++ +A G P G PN + G+ P + YG
Sbjct: 180 VECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATY-GRGYPGFAPSYG 238
Query: 232 PQGMWVPAGQAIGGYGP-----PPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGA 286
Q PA YGP A RG+ P PGGFP G +
Sbjct: 239 YQFPGFPA----AAYGPVAAAAVAAARGSGSNP---------ARPGGFP-------GANS 278
Query: 287 PPQFSFGYGP 296
P + YGP
Sbjct: 279 PGPVADLYGP 288
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 172 bits (435), Expect = 6e-43
Identities = 86/202 (42%), Positives = 124/202 (61%), Gaps = 18/202 (8%)
Query: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
K+F+GGL W TTQE LR YF Q+GEV +C++M+D T +SRGFGFV F D V VLA
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
H LD + IDPK PR QP+ +++ KIFVGG+ N +++
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQPKMV--------------TRTKKIFVGGLSVNTTVEDVK 126
Query: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
+YF++FG V + ++++D R RGFGF+TFE E V++ +HFH+I K VE K+A+P
Sbjct: 127 QYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQP 186
Query: 191 RDSKSQAPGQPGASQWGSRVVP 212
++ S G+++ SRV+P
Sbjct: 187 KEVMSPT----GSARGRSRVMP 204
>gi|25121993 musashi 2 isoform b [Homo sapiens]
Length = 251
Score = 167 bits (424), Expect = 1e-41
Identities = 77/182 (42%), Positives = 117/182 (64%), Gaps = 14/182 (7%)
Query: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
K+F+GGL W T+ ++LR YFS++GE+ +C++M+D TT +SRGFGFV F DP V VL
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
H LD + IDPK PR QP+ +++ KIFVGG+ N +++
Sbjct: 78 PHHELDSKTIDPKVAFPRRAQPKMV--------------TRTKKIFVGGLSANTVVEDVK 123
Query: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
+YF++FG V + ++++D R RGFGF+TFE+E V++ +HFH+I K VE K+A+P
Sbjct: 124 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQP 183
Query: 191 RD 192
++
Sbjct: 184 KE 185
Score = 72.0 bits (175), Expect = 8e-13
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
S S+K+F+GG+ LR+YF KFG + E +++ D +R RGFGF+TF D SVD+
Sbjct: 14 SPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 73
Query: 170 AVNMHFHDIMGKKVEVKRAEPR 191
+ H++ K ++ K A PR
Sbjct: 74 VLGQPHHELDSKTIDPKVAFPR 95
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 162 bits (409), Expect = 6e-40
Identities = 94/254 (37%), Positives = 130/254 (51%), Gaps = 26/254 (10%)
Query: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
++ GK+FVGGL W T+++ L+ YF+++GEVVDC I D T +SRGFGF+ FKD V
Sbjct: 67 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126
Query: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
VL + H LDGR IDPK P + KIFVGG+ E
Sbjct: 127 VLDQKEHRLDGRVIDPKKAMAMKKDPVK-------------------KIFVGGLNPEATE 167
Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
++REYF +FG + + + D + + RGF FITF++E+ V + + FH + G K E+K
Sbjct: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227
Query: 187 RAEPRDSKSQAPGQPGASQWGSRVVPN---AANGWAGQPPPTWQQGYGPQGMWVPAGQAI 243
A+P++ Q Q G+ G+R N G G +W QGYG W
Sbjct: 228 VAQPKEVYQQQ--QYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYG--NYWNQGYGYQ 283
Query: 244 GGYGPPPAGRGAPP 257
GYGP G P
Sbjct: 284 QGYGPGYGGYDYSP 297
Score = 65.1 bits (157), Expect = 1e-10
Identities = 31/90 (34%), Positives = 52/90 (57%)
Query: 99 EGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
EG Q + + K+FVGG+ + + +L++YF KFG V + + D R RGFGF
Sbjct: 56 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 115
Query: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 188
I F+D SV++ ++ H + G+ ++ K+A
Sbjct: 116 ILFKDAASVEKVLDQKEHRLDGRVIDPKKA 145
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 154 bits (389), Expect = 1e-37
Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 18/250 (7%)
Query: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
++ KLF+GGL + TT+E+LR+Y+ Q+G++ DCV+M+D + +SRGFGFV F V
Sbjct: 18 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 77
Query: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
+A+RPH++DGR ++PK R + G + K+FVGGI + E
Sbjct: 78 AMAARPHSIDGRVVEPKRAVARE------------ESGKPGAHVTVKKLFVGGIKEDTEE 125
Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
LR+YF+++G + + +I D + + RGFGF+TF+D VD+ V +H I G EV+
Sbjct: 126 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVR 185
Query: 187 RA----EPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQA 242
+A E ++ +S G+ G +G + P ++ G G G
Sbjct: 186 KALSRQEMQEVQSSRSGRGGNFGFGDS--RGGGGNFGPGPGSNFRGGSDGYGSGRGFGDG 243
Query: 243 IGGYGPPPAG 252
GYG P G
Sbjct: 244 YNGYGGGPGG 253
Score = 71.2 bits (173), Expect = 1e-12
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Query: 106 RSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 165
+ + + K+F+GG+ E LR Y++++G +T+ V++ D +R RGFGF+TF
Sbjct: 14 KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 73
Query: 166 SVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGA 203
VD A+ H I G+ VE KRA R+ G+PGA
Sbjct: 74 EVDAAMAARPHSIDGRVVEPKRAVAREES----GKPGA 107
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 154 bits (389), Expect = 1e-37
Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 18/250 (7%)
Query: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
++ KLF+GGL + TT+E+LR+Y+ Q+G++ DCV+M+D + +SRGFGFV F V
Sbjct: 6 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 65
Query: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
+A+RPH++DGR ++PK R + G + K+FVGGI + E
Sbjct: 66 AMAARPHSIDGRVVEPKRAVARE------------ESGKPGAHVTVKKLFVGGIKEDTEE 113
Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
LR+YF+++G + + +I D + + RGFGF+TF+D VD+ V +H I G EV+
Sbjct: 114 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVR 173
Query: 187 RA----EPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQA 242
+A E ++ +S G+ G +G + P ++ G G G
Sbjct: 174 KALSRQEMQEVQSSRSGRGGNFGFGDS--RGGGGNFGPGPGSNFRGGSDGYGSGRGFGDG 231
Query: 243 IGGYGPPPAG 252
GYG P G
Sbjct: 232 YNGYGGGPGG 241
Score = 70.9 bits (172), Expect = 2e-12
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 108 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167
+ + K+F+GG+ E LR Y++++G +T+ V++ D +R RGFGF+TF V
Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63
Query: 168 DQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGA 203
D A+ H I G+ VE KRA R+ G+PGA
Sbjct: 64 DAAMAARPHSIDGRVVEPKRAVAREES----GKPGA 95
>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
[Homo sapiens]
Length = 336
Score = 153 bits (387), Expect = 2e-37
Identities = 93/249 (37%), Positives = 128/249 (51%), Gaps = 30/249 (12%)
Query: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
++ GK+F+GGL W TT++ L+ YFS++GEVVDC + D T +SRGFGFV FK+ V
Sbjct: 75 EDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 134
Query: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
V+ + H L+G+ IDPK R K K P KIFVGG+ + E
Sbjct: 135 VMDQKEHKLNGKVIDPK------------RAKAMKTKEP------VKKIFVGGLSPDTPE 176
Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
++REYF FG V + + D + + RGF FITF++E+ V + + +H++ K E+K
Sbjct: 177 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 236
Query: 187 RAEPRDSKSQAPGQPGASQWGSR-VVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGG 245
A ++ Q QWGSR A G G P W QGY W Q G
Sbjct: 237 VAMSKEQYQQ------QQQWGSRGGFAGRARGRGGGPSQNWNQGY--SNYW---NQGYGN 285
Query: 246 YGPPPAGRG 254
YG G G
Sbjct: 286 YGYNSQGYG 294
Score = 68.2 bits (165), Expect = 1e-11
Identities = 33/96 (34%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 103 KGPRSDNSKSN----KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
+G + D SK+ K+F+GG+ + + +L++YF KFG V + + D R RGFGF
Sbjct: 64 EGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 123
Query: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 194
+ F++ +SVD+ ++ H + GK ++ KRA+ +K
Sbjct: 124 VLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 159
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 152 bits (384), Expect = 5e-37
Identities = 84/225 (37%), Positives = 120/225 (53%), Gaps = 21/225 (9%)
Query: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
++ GK+FVGGL W T+++ L+ YF+++GEVVDC I D T +SRGFGF+ FKD V
Sbjct: 67 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126
Query: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
VL + H LDGR IDPK P + KIFVGG+ E
Sbjct: 127 VLDQKEHRLDGRVIDPKKAMAMKKDPVK-------------------KIFVGGLNPEATE 167
Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
++REYF +FG + + + D + + RGF FITF++E+ V + + FH + G K E+K
Sbjct: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227
Query: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYG 231
A+P++ Q Q G+ G+R N +G G YG
Sbjct: 228 VAQPKEVYQQQ--QYGSGGRGNRNRGNRGSGGGGGGGGQGSTNYG 270
Score = 65.1 bits (157), Expect = 1e-10
Identities = 31/90 (34%), Positives = 52/90 (57%)
Query: 99 EGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
EG Q + + K+FVGG+ + + +L++YF KFG V + + D R RGFGF
Sbjct: 56 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 115
Query: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 188
I F+D SV++ ++ H + G+ ++ K+A
Sbjct: 116 ILFKDAASVEKVLDQKEHRLDGRVIDPKKA 145
>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
[Homo sapiens]
Length = 355
Score = 150 bits (380), Expect = 1e-36
Identities = 92/245 (37%), Positives = 125/245 (51%), Gaps = 30/245 (12%)
Query: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
K+F+GGL W TT++ L+ YFS++GEVVDC + D T +SRGFGFV FK+ V V+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
+ H L+G+ IDPK R K K P KIFVGG+ + E ++R
Sbjct: 158 KEHKLNGKVIDPK------------RAKAMKTKEP------VKKIFVGGLSPDTPEEKIR 199
Query: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
EYF FG V + + D + + RGF FITF++E+ V + + +H++ K E+K A
Sbjct: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259
Query: 191 RDSKSQAPGQPGASQWGSR-VVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPP 249
++ Q QWGSR A G G P W QGY W Q G YG
Sbjct: 260 KEQYQQ------QQQWGSRGGFAGRARGRGGGPSQNWNQGY--SNYW---NQGYGNYGYN 308
Query: 250 PAGRG 254
G G
Sbjct: 309 SQGYG 313
Score = 55.8 bits (133), Expect = 6e-08
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
+ + K+FVGGL T +E +R YF +GEV + D TN+ RGF F+ FK+ V
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Query: 67 VLASRPHTLDGRNIDPKPCTPR-GMQPERTRPKEGW 101
++ + H N+ C + M E+ + ++ W
Sbjct: 239 IMEKKYH-----NVGLSKCEIKVAMSKEQYQQQQQW 269
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 145 bits (367), Expect = 4e-35
Identities = 87/247 (35%), Positives = 120/247 (48%), Gaps = 28/247 (11%)
Query: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
GK+F+GGL W T+++ L Y S++GEVVDC I D T +SRGFGFV FKD V VL
Sbjct: 148 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 207
Query: 70 SRPHTLDGRNIDPKPCTP-RGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETE 128
+ H LDG+ IDPK +G +P + K+FVGG+ + E +
Sbjct: 208 LKEHKLDGKLIDPKRAKALKGKEPPK-------------------KVFVGGLSPDTSEEQ 248
Query: 129 LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 188
++EYF FG + + + D + RGF FIT+ DE+ V + + +H I K E+K A
Sbjct: 249 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 308
Query: 189 EP----RDSKSQAPGQPGASQWGSRVVPNAANG----WAGQPPPTWQQGYGPQGMWVPAG 240
+P R + Q G GA+ G G W + QGYG
Sbjct: 309 QPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGD 368
Query: 241 QAIGGYG 247
Q GYG
Sbjct: 369 QNYSGYG 375
Score = 63.9 bits (154), Expect = 2e-10
Identities = 31/96 (32%), Positives = 51/96 (53%)
Query: 99 EGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
EG + + K+F+GG+ + + +L EY +FG V + + D R RGFGF
Sbjct: 134 EGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGF 193
Query: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 194
+ F+D SVD+ + + H + GK ++ KRA+ K
Sbjct: 194 VLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGK 229
Score = 60.1 bits (144), Expect = 3e-09
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 5 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
G + K+FVGGL T++E ++ YF +GE+ + + D TN+ RGF F+ + D V
Sbjct: 228 GKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPV 287
Query: 65 GTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 106
+L SR H + + K P+ E R ++ QKG R
Sbjct: 288 KKLLESRYHQIGSGKCEIKVAQPK----EVYRQQQQQQKGGR 325
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 145 bits (366), Expect = 6e-35
Identities = 95/294 (32%), Positives = 144/294 (48%), Gaps = 34/294 (11%)
Query: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
+++ KLF+GGL + TT E+LRS+F Q+G + DCV+M+D T +SRGFGFV + V
Sbjct: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
Query: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
+ +RPH +DGR ++PK R + RP + KIFVGGI + E
Sbjct: 71 AMNARPHKVDGRVVEPKRAVSR---EDSQRP---------GAHLTVKKIFVGGIKEDTEE 118
Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
LR+YF+++G + + ++ D + RGF F+TF+D SVD+ V +H + G EV+
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
Query: 187 RA----EPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQA 242
+A E + S G+ G+ +G G+ G +G G +
Sbjct: 179 KALSKQEMASASSSQRGRSGSGNFGG----GRGGGFGG------NDNFGRGGNF----SG 224
Query: 243 IGGYGPPPAGRGAPPPPPPFTSY-IVSTPPGGFPPPQGFPQGYGAPPQFSFGYG 295
GG+G G G + + GG P G +GYG+ Q GYG
Sbjct: 225 RGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQ---GYG 275
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 143 bits (360), Expect = 3e-34
Identities = 77/211 (36%), Positives = 117/211 (55%), Gaps = 16/211 (7%)
Query: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
+++ KLF+GGL + TT E+LRS+F Q+G + DCV+M+D T +SRGFGFV + V
Sbjct: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
Query: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
+ + PH +DGR ++PK R + RP + KIFVGGI + E
Sbjct: 71 AMNTTPHKVDGRVVEPKRAVSR---EDSQRP---------GAHLTVKKIFVGGIKEDTEE 118
Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
LR+YF+++G + + ++ D + RGF F+TF+D SVD+ V +H + G EV+
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVR 178
Query: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANG 217
+A P+ + A +SQ G R N G
Sbjct: 179 KALPKQEMASA----SSSQRGRRGSGNFGGG 205
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 143 bits (360), Expect = 3e-34
Identities = 77/211 (36%), Positives = 117/211 (55%), Gaps = 16/211 (7%)
Query: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
+++ KLF+GGL + TT E+LRS+F Q+G + DCV+M+D T +SRGFGFV + V
Sbjct: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
Query: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
+ + PH +DGR ++PK R + RP + KIFVGGI + E
Sbjct: 71 AMNTTPHKVDGRVVEPKRAVSR---EDSQRP---------GAHLTVKKIFVGGIKEDTEE 118
Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
LR+YF+++G + + ++ D + RGF F+TF+D SVD+ V +H + G EV+
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVR 178
Query: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANG 217
+A P+ + A +SQ G R N G
Sbjct: 179 KALPKQEMASA----SSSQRGRRGSGNFGGG 205
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 142 bits (359), Expect = 4e-34
Identities = 75/205 (36%), Positives = 116/205 (56%), Gaps = 16/205 (7%)
Query: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
+++ KLF+GGL + TT E+LRS+F Q+G + DCV+M+D T +SRGFGFV + V
Sbjct: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
Query: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
+ +RPH +DGR ++PK R + RP + KIFVGGI + E
Sbjct: 71 AMNARPHKVDGRVVEPKRAVSR---EDSQRP---------GAHLTVKKIFVGGIKEDTEE 118
Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
LR+YF+++G + + ++ D + RGF F+TF+D SVD+ V +H + G EV+
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178
Query: 187 RA----EPRDSKSQAPGQPGASQWG 207
+A E + S G+ G+ +G
Sbjct: 179 KALSKQEMASASSSQRGRSGSGNFG 203
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 141 bits (355), Expect = 1e-33
Identities = 71/196 (36%), Positives = 111/196 (56%), Gaps = 12/196 (6%)
Query: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
+++ KLF+GGL + TT ++LR +F ++G + DCV+M+D T +SRGFGFV + V
Sbjct: 32 EQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA 91
Query: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
+ +RPH +DGR ++PK R + +P + KIFVGGI + E
Sbjct: 92 AMCARPHKVDGRVVEPKRAVSR---EDSVKP---------GAHLTVKKIFVGGIKEDTEE 139
Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
LR+YF+K+G + + ++ D + + RGF F+TF+D +VD+ V +H I G EVK
Sbjct: 140 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVK 199
Query: 187 RAEPRDSKSQAPGQPG 202
+A + A Q G
Sbjct: 200 KALSKQEMQSAGSQRG 215
Score = 72.8 bits (177), Expect = 5e-13
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 80 IDPKPCTPRGMQPE--RTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFG 137
+ P P P QP+ R R + G + + + K+F+GG+ + LRE+F+K+G
Sbjct: 3 VKPPPGRP---QPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWG 59
Query: 138 VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQA 197
+T+ V++ D + +R RGFGF+T+ + VD A+ H + G+ VE KRA R+ S
Sbjct: 60 TLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED-SVK 118
Query: 198 PG 199
PG
Sbjct: 119 PG 120
>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
[Homo sapiens]
Length = 287
Score = 140 bits (354), Expect = 1e-33
Identities = 85/228 (37%), Positives = 122/228 (53%), Gaps = 33/228 (14%)
Query: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
++ GK+F+GGL W TT++ L+ YFS++GEVVDC + D T +SRGFGFV FK+ V
Sbjct: 75 EDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 134
Query: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
V+ + H L+G+ IDPK R K K P KIFVGG+ + E
Sbjct: 135 VMDQKEHKLNGKVIDPK------------RAKAMKTKEP------VKKIFVGGLSPDTPE 176
Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
++REYF FG V + + D + + RGF FITF++E+ V + + +H++ K E+K
Sbjct: 177 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 236
Query: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQP---PPTWQQGYG 231
A ++ Q QWGSR G+AG+ Q GYG
Sbjct: 237 VAMSKEQYQQ------QQQWGSR------GGFAGRARGRGGDQQSGYG 272
Score = 68.2 bits (165), Expect = 1e-11
Identities = 33/96 (34%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 103 KGPRSDNSKSN----KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
+G + D SK+ K+F+GG+ + + +L++YF KFG V + + D R RGFGF
Sbjct: 64 EGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 123
Query: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 194
+ F++ +SVD+ ++ H + GK ++ KRA+ +K
Sbjct: 124 VLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 159
>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
[Homo sapiens]
Length = 306
Score = 138 bits (347), Expect = 9e-33
Identities = 84/224 (37%), Positives = 119/224 (53%), Gaps = 33/224 (14%)
Query: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
K+F+GGL W TT++ L+ YFS++GEVVDC + D T +SRGFGFV FK+ V V+
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
+ H L+G+ IDPK R K K P KIFVGG+ + E ++R
Sbjct: 158 KEHKLNGKVIDPK------------RAKAMKTKEP------VKKIFVGGLSPDTPEEKIR 199
Query: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
EYF FG V + + D + + RGF FITF++E+ V + + +H++ K E+K A
Sbjct: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259
Query: 191 RDSKSQAPGQPGASQWGSRVVPNAANGWAGQP---PPTWQQGYG 231
++ Q QWGSR G+AG+ Q GYG
Sbjct: 260 KEQYQQ------QQQWGSR------GGFAGRARGRGGDQQSGYG 291
Score = 55.8 bits (133), Expect = 6e-08
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
+ + K+FVGGL T +E +R YF +GEV + D TN+ RGF F+ FK+ V
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
Query: 67 VLASRPHTLDGRNIDPKPCTPR-GMQPERTRPKEGW 101
++ + H N+ C + M E+ + ++ W
Sbjct: 239 IMEKKYH-----NVGLSKCEIKVAMSKEQYQQQQQW 269
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 137 bits (344), Expect = 2e-32
Identities = 95/306 (31%), Positives = 146/306 (47%), Gaps = 49/306 (16%)
Query: 1 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
M NS ++ KLF+GGL+ T++ LR +F +G + DCV++ + T +SR FGFV + +
Sbjct: 1 MENS---QLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSN 57
Query: 61 PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI 120
+A+ PH +DG ++ K R + RP ++K K+FVGG+
Sbjct: 58 VEEADAAMAASPHAVDGNTVELKRAVSR---EDSARP---------GAHAKVKKLFVGGL 105
Query: 121 PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG 180
+ E +L E+F +FG V + +I D + + RGFGF+ F++ + D+A + FH I G
Sbjct: 106 KGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQG 165
Query: 181 KKVEVKRAEPRD----------SKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGY 230
+VEVK+A P++ S+S G+ G + G R + G G GY
Sbjct: 166 HRVEVKKAVPKEDIYSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGG--------GY 217
Query: 231 GPQGMWVPAGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQF 290
G + G GGY G G +SY GG GF G+G+ Q
Sbjct: 218 NSYGGY--GGGGGGGYNAYGGGGGG-------SSY------GGSDYGNGF-GGFGSYSQH 261
Query: 291 SFGYGP 296
YGP
Sbjct: 262 QSSYGP 267
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 125 bits (315), Expect = 5e-29
Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 18/240 (7%)
Query: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
++ KLF+GGL + T+ E+LRS+ Q+G + +CV+M+D TN+SRGFGFV + V
Sbjct: 12 QLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAA 71
Query: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127
+ +RPH + GR ++PK R + RP KIFVGGI + E
Sbjct: 72 MNARPHKMGGRVVEPKTAVSR---EDSQRP---------GAYLTVKKIFVGGIKEDTEEH 119
Query: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
LR+Y++++G + ++ D + R F F+TF++ S D+ V +H + G EV++
Sbjct: 120 PLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRK 179
Query: 188 AEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYG 247
A + + AP + G++G +G G + G G +G
Sbjct: 180 ALSKQKMASAPSSQRSRSGSGNFGGGRGGGFSG------NDNFGHGGNFSGCGGLGGSHG 233
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 125 bits (314), Expect = 6e-29
Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 18/240 (7%)
Query: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
++ KLF+GGL + T+ E+LRS+ Q+G + +CV+M+D TN+SRGFGFV + V
Sbjct: 12 QLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAA 71
Query: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127
+ +RPH + GR ++PK R + RP KIFVGGI + E
Sbjct: 72 MNARPHKMGGRVVEPKTAVSR---EDSQRP---------GAYLTVKKIFVGGIKEDTEEH 119
Query: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
LR+Y++++G + ++ D + R F F+TF++ S D+ V +H + G EV++
Sbjct: 120 PLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRK 179
Query: 188 AEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYG 247
A + + AP + G++G +G G + G G +G
Sbjct: 180 ALSKQKMASAPSSQRSRSGSGNFGGGRGGGFSG------NDNFGHGGNFSGCGGFGGSHG 233
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 125 bits (314), Expect = 6e-29
Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 18/240 (7%)
Query: 8 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
++ KLF+GGL + T+ E+LRS+ Q+G + +CV+M+D TN+SRGFGFV + V
Sbjct: 12 QLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAA 71
Query: 68 LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127
+ +RPH + GR ++PK R + RP KIFVGGI + E
Sbjct: 72 MNARPHKMGGRVVEPKTAVSR---EDSQRP---------GAYLTVKKIFVGGIKEDTEEH 119
Query: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
LR+Y++++G + ++ D + R F F+TF++ S D+ V +H + G EV++
Sbjct: 120 PLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRK 179
Query: 188 AEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYG 247
A + + AP + G++G +G G + G G +G
Sbjct: 180 ALSKQKMASAPSSQRSRSGSGNFGGGRGGGFSG------NDNFGHGGNFSGCGGFGGSHG 233
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 97.8 bits (242), Expect = 1e-20
Identities = 102/378 (26%), Positives = 142/378 (37%), Gaps = 89/378 (23%)
Query: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF-KDPNCVGTVLAS 70
++VGGLD ++ L F Q G VV+ + KD+ T Q +G+GFV+F + + +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
L G+ P R K + IF+G + E L
Sbjct: 75 NMIKLYGK-------------PIRVNKASAHNK----NLDVGANIFIGNLDPEIDEKLLY 117
Query: 131 EYFKKFGVVTEVVMIY-DAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 188
+ F FGV+ + I D + +G+ FI F + D A+ M+ + + + V A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 189 EPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGP 248
+DSK + G A A Q P Q P ++ A
Sbjct: 178 FKKDSKGERHGSA------------AERLLAAQNP--LSQADRPHQLFADA--------- 214
Query: 249 PPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQFAPPG 308
PPPP + +VS+ G PPP G PP SF PPP PP PPG
Sbjct: 215 --------PPPPSAPNPVVSSLGSGLPPP-------GMPPPGSF---PPPVPPPGALPPG 256
Query: 309 V----PPPPATPGAAPLAFP--------------------PPPSQAAPDMSKPPTAQPDF 344
+ PPPP PGAA P PP P MS+ A
Sbjct: 257 IPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAH--- 313
Query: 345 PYGQYGLGSYSPAPPGCG 362
+G +GLG PPG G
Sbjct: 314 -HGPHGLGHPHAGPPGSG 330
Score = 55.1 bits (131), Expect = 1e-07
Identities = 43/126 (34%), Positives = 49/126 (38%), Gaps = 18/126 (14%)
Query: 220 GQPPPTWQQ----GYGPQGMWVPAGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFP 275
G P P Q +GP G+ P GPP +G PP PPP + PP G P
Sbjct: 300 GMPHPGMSQMQLAHHGPHGLGHPHA------GPPGSGGQPPPRPPPGMPH-PGPPPMGMP 352
Query: 276 P---PQGFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAP 332
P P G P G+ P GPPP P P G PP P P PP + P
Sbjct: 353 PRGPPFGSPMGHPGPMPPHGMRGPPPLMP----PHGYTGPPRPPPYGYQRGPLPPPRPTP 408
Query: 333 DMSKPP 338
PP
Sbjct: 409 RPPVPP 414
Score = 53.5 bits (127), Expect = 3e-07
Identities = 44/112 (39%), Positives = 48/112 (42%), Gaps = 24/112 (21%)
Query: 217 GWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPPPAGRGAPPPPPPFTS---YIVSTPPGG 273
G GQPPP P GM P GPPP G PP PPF S + PP G
Sbjct: 328 GSGGQPPPR-----PPPGMPHP--------GPPPMGM--PPRGPPFGSPMGHPGPMPPHG 372
Query: 274 F--PPPQGFPQGYGAPPQ---FSFGYGPPPPPPDQFAPPGVPPPPATPGAAP 320
PPP P GY PP+ + + GP PPP PP VPP G P
Sbjct: 373 MRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPP-VPPRGPLRGPLP 423
Score = 47.0 bits (110), Expect = 3e-05
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 104 GPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
GP S+ ++ ++VGG+ E L E F + G V M D + +G+GF+ F
Sbjct: 4 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 63
Query: 164 EQSVDQAVN-MHFHDIMGKKVEVKRA 188
E+ D A+ M+ + GK + V +A
Sbjct: 64 EEDADYAIKIMNMIKLYGKPIRVNKA 89
Score = 37.0 bits (84), Expect = 0.029
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 2 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCV-IMKDKTTNQSRGFGFVKF 58
+N D +F+G LD ++ L FS +G ++ IM+D T S+G+ F+ F
Sbjct: 92 HNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
>gi|6678271 TAR DNA binding protein [Homo sapiens]
Length = 414
Score = 94.0 bits (232), Expect = 2e-19
Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 24/186 (12%)
Query: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
L V GL W TT++ L+ YFS +GEV+ + KD T S+GFGFV+F + V++ R
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELRE 131
H +DGR D K + Q E R S K+FVG + E ELRE
Sbjct: 166 -HMIDGRWCDCKLPNSKQSQDEPLR---------------SRKVFVGRCTEDMTEDELRE 209
Query: 132 YFKKFGVVTEVVMIYDAEKQRP-RGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
+F ++G V +V + +P R F F+TF D+Q + Q++ I G V + AEP
Sbjct: 210 FFSQYGDVMDVFI------PKPFRAFAFVTFADDQ-IAQSLCGEDLIIKGISVHISNAEP 262
Query: 191 RDSKSQ 196
+ + ++
Sbjct: 263 KHNSNR 268
Score = 43.9 bits (102), Expect = 2e-04
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 97 PKEGWQKGPRSDNS----------KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIY 146
PK+ +K +D S K++ + V G+P E +L+EYF FG V V +
Sbjct: 78 PKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 137
Query: 147 DAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQ 196
D + +GFGF+ F + ++ + ++ H I G+ + K + S+ +
Sbjct: 138 DLKTGHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQSQDE 186
Score = 40.0 bits (92), Expect = 0.003
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
K+FVG T++ LR +FSQYG+V+D I K R F FV F D
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK-----PFRAFAFVTFAD 236
>gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]
Length = 392
Score = 92.8 bits (229), Expect = 4e-19
Identities = 75/271 (27%), Positives = 123/271 (45%), Gaps = 28/271 (10%)
Query: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCVGTVLAS 70
+FVG L T E ++S F+ +G++ D ++KD T +S+G+GFV F + + ++
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 71 RPHTLDGRNI-----DPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCG 125
L GR I KP P+ Q T+ ++ + K+ ++ GGI
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLR-FEDVVNQSSPKNCTVYCGGIASGLT 234
Query: 126 ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVE 184
+ +R+ F FG + E+ + + +G+ F+ F +S A V+++ I G V+
Sbjct: 235 DQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
Query: 185 VKRAEPRDSKSQAPGQPGASQWG--SRVVPN-------AANGWAGQPPPTWQQGYGPQGM 235
+ ++ Q SQWG S+V N ANGW P + Q + QG
Sbjct: 289 CYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGF 348
Query: 236 WV---PAGQAIGGYGPPPAGRGAPPP--PPP 261
V P+ +GG+G P APPP PPP
Sbjct: 349 GVDQSPSAAWMGGFGAQPPQGQAPPPVIPPP 379
Score = 49.3 bits (116), Expect = 6e-06
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKD----KTTNQSRGFGFVKF--KDPNCVG 65
L+VG L T+ + FSQ G C ++ + + N S GF ++ DP C
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 66 TVLASRPHT-----LDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRS---DNSKSNKIFV 117
R ++GR I K K W P S D S +FV
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEV------------KVNWATTPSSQKKDTSNHFHVFV 118
Query: 118 GGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171
G + +++ F FG +++ ++ D + +G+GF++F ++ + A+
Sbjct: 119 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 172
>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
Length = 375
Score = 92.8 bits (229), Expect = 4e-19
Identities = 75/271 (27%), Positives = 123/271 (45%), Gaps = 28/271 (10%)
Query: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCVGTVLAS 70
+FVG L T E ++S F+ +G++ D ++KD T +S+G+GFV F + + ++
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 71 RPHTLDGRNI-----DPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCG 125
L GR I KP P+ Q T+ ++ + K+ ++ GGI
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLR-FEDVVNQSSPKNCTVYCGGIASGLT 217
Query: 126 ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVE 184
+ +R+ F FG + E+ + + +G+ F+ F +S A V+++ I G V+
Sbjct: 218 DQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 271
Query: 185 VKRAEPRDSKSQAPGQPGASQWG--SRVVPN-------AANGWAGQPPPTWQQGYGPQGM 235
+ ++ Q SQWG S+V N ANGW P + Q + QG
Sbjct: 272 CYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGF 331
Query: 236 WV---PAGQAIGGYGPPPAGRGAPPP--PPP 261
V P+ +GG+G P APPP PPP
Sbjct: 332 GVDQSPSAAWMGGFGAQPPQGQAPPPVIPPP 362
Score = 54.7 bits (130), Expect = 1e-07
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 21/163 (12%)
Query: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
L+VG L T+ + FSQ G C ++ + T+N + FV+F + LA+
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAA- 67
Query: 72 PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRS---DNSKSNKIFVGGIPHNCGETE 128
++GR I K K W P S D S +FVG + +
Sbjct: 68 ---MNGRKILGKEV------------KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTED 112
Query: 129 LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171
++ F FG +++ ++ D + +G+GF++F ++ + A+
Sbjct: 113 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 155
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 80.5 bits (197), Expect = 2e-15
Identities = 55/138 (39%), Positives = 60/138 (43%), Gaps = 11/138 (7%)
Query: 207 GSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPPPA-GRGAPPPPPPFTSY 265
G V N A PPP + G P P G PPPA GRGAPPPPP
Sbjct: 264 GVEAVKNELRRQAPPPPPPSRGGPPPP----PPPPHNSGPPPPPARGRGAPPPPPSRAP- 318
Query: 266 IVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVP-PPPATPGAAPLAFP 324
+ PP PPP P PP + Y PPPP AP G P PPP+ G P+A P
Sbjct: 319 -TAAPP---PPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPVAPP 374
Query: 325 PPPSQAAPDMSKPPTAQP 342
PPP P PP P
Sbjct: 375 PPPPPPPPPGPPPPPGLP 392
Score = 76.6 bits (187), Expect = 3e-14
Identities = 47/114 (41%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 253 RGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPP 312
R APPPPPP GG PPP P G PP + G G PPPPP + AP PPP
Sbjct: 274 RQAPPPPPPSR--------GGPPPPPPPPHNSGPPPPPARGRGAPPPPPSR-APTAAPPP 324
Query: 313 P-------ATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYGLGSYSPAPP 359
P A P P PPP A P S P+ P P G+G +P PP
Sbjct: 325 PPPSRPSVAVPPPPPNRMYPPPPPALP--SSAPSGPPPPPPSVLGVGPVAPPPP 376
Score = 72.8 bits (177), Expect = 5e-13
Identities = 60/191 (31%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 156 FGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAA 215
F + Q D+ + +D + K V+ A + + QAP P S+ G P
Sbjct: 236 FDMCGISEAQLKDRETSKVIYDFIEKTGGVE-AVKNELRRQAPPPPPPSRGGPPPPPPPP 294
Query: 216 NGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPPP--AGRGAPPPPPPFTSYIVSTPPGG 273
+ PPP +G P PPP A APPPPPP + PP
Sbjct: 295 HNSGPPPPPARGRGAPP---------------PPPSRAPTAAPPPPPPSRPSVAVPPP-- 337
Query: 274 FPPPQGFPQGYGAPPQFSFGYGPPPPPPD-----QFAPPGVPPPPATPGAAPLAFPPPPS 328
PP + +P A P S GPPPPPP APP PPPP PG PPPP
Sbjct: 338 -PPNRMYPPPPPALPS-SAPSGPPPPPPSVLGVGPVAPPPPPPPPPPPGP-----PPPPG 390
Query: 329 QAAPDMSKPPT 339
+ + PT
Sbjct: 391 LPSDGDHQVPT 401
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 80.1 bits (196), Expect = 3e-15
Identities = 72/263 (27%), Positives = 106/263 (40%), Gaps = 20/263 (7%)
Query: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED-EQSVDQ 169
+ K+F+GG+ E L F K+G + EV+++ D E + RGF F+TFE + D
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 170 AVNMHFHDIMGKKVEVKRAEPR--DSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQ 227
A +M+ + GK ++V++A +S + P P S+ R + G G P +
Sbjct: 66 ARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSR 125
Query: 228 QGYGPQGMWVPAGQAIGGYGPPPAGRGAPP----PPP----PFTSYIVSTPPGGFPPPQG 279
G+ G + GP P RG PP PPP P S+ GG P
Sbjct: 126 GGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSR 185
Query: 280 FPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPT 339
YG PP+ P P D + P + + P S+ D + PP
Sbjct: 186 GRDSYGGPPRRE----PLPSRRDVYLSPRDDGYSTKDSYSSRDY--PSSRDTRDYAPPPR 239
Query: 340 AQPDFPYGQYGLGSYSPAPPGCG 362
D+ Y YG S P G
Sbjct: 240 ---DYTYRDYGHSSSRDDYPSRG 259
Score = 73.6 bits (179), Expect = 3e-13
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP---- 61
AD GKLF+GGL+ T ++ L + F +YG +V+ ++MKD+ TN+SRGF FV F+ P
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 62 -------------NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSD 108
+ A++P GR P P RG P R G G R
Sbjct: 64 DAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRG-PPRGLRGGRGGSGGTRGP 122
Query: 109 NSKSNKIFVGGIPHN 123
S+ + GG N
Sbjct: 123 PSRGGHMDDGGYSMN 137
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 78.6 bits (192), Expect = 9e-15
Identities = 62/183 (33%), Positives = 68/183 (37%), Gaps = 25/183 (13%)
Query: 193 SKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGG--YGPPP 250
+K Q P P G P N G PPP QG PQG + ++ G GPPP
Sbjct: 45 NKPQGPPPPPGKPQGPP--PQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPP 102
Query: 251 AGRGAPPPPPPFTSYIVSTPPGG-----FPPPQGFPQGYGAPPQFSFGYGPPPPPPDQFA 305
G P PPP PP G PPP G PQ G PPQ P PP
Sbjct: 103 QGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQ--GPPPQGDKSRSPRSPPGKPQG 160
Query: 306 PP--------GVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYGLGSYSPA 357
PP G PPPP P PPP PP +P P Q S +
Sbjct: 161 PPPQGGNQPQGPPPPPGKPQG------PPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQS 214
Query: 358 PPG 360
PPG
Sbjct: 215 PPG 217
Score = 76.3 bits (186), Expect = 4e-14
Identities = 64/185 (34%), Positives = 74/185 (40%), Gaps = 39/185 (21%)
Query: 190 PRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQ-QGYGPQGMWVPAGQAIGGYGP 248
P+ KS++P P G P N G PPP + QG PQG P G P
Sbjct: 143 PQGDKSRSPRSPPGKPQGPP--PQGGNQPQGPPPPPGKPQGPPPQGGKKPQG-------P 193
Query: 249 PPAGRGAPPPPPPFTSYIVSTPPGG--FPPPQGFPQGYGAPPQFSFGYGPPP-------- 298
PP G+ PPP S +PPG PPPQG Q G PP GPPP
Sbjct: 194 PPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG 253
Query: 299 -PPPDQ---------------FAPPGVPP-PPATPGAAPLAFPPPPSQAAPDMSK-PPTA 340
PPP + +PPG P PP G P PPPP+ P + PP
Sbjct: 254 PPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQG-PPPPAGGNPQQPQAPPAG 312
Query: 341 QPDFP 345
QP P
Sbjct: 313 QPQGP 317
Score = 75.5 bits (184), Expect = 7e-14
Identities = 66/194 (34%), Positives = 73/194 (37%), Gaps = 40/194 (20%)
Query: 190 PRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQ-QGYGPQGMWVPAGQAIGGYGP 248
P+ KS++P P G P N G PPP + QG PQG P G P
Sbjct: 82 PQGDKSRSPRSPPGKPQGPP--PQGGNQPQGPPPPPGKPQGPPPQGGNRPQG-------P 132
Query: 249 PPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPP-PDQFAP- 306
PP G+ PPP S +PPG PQG P G PQ GPPPPP Q P
Sbjct: 133 PPPGKPQGPPPQGDKSRSPRSPPG---KPQGPPPQGGNQPQ-----GPPPPPGKPQGPPP 184
Query: 307 -----PGVPPPPATPGAAP---------------LAFPPPPSQAAPDMSKPPTAQPDFPY 346
P PPPP P P PPP P PP +P P
Sbjct: 185 QGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP 244
Query: 347 GQYGLGSYSPAPPG 360
Q G P PPG
Sbjct: 245 PQGGNKPQGPPPPG 258
Score = 63.2 bits (152), Expect = 4e-10
Identities = 59/176 (33%), Positives = 62/176 (35%), Gaps = 45/176 (25%)
Query: 219 AGQPPPTWQQGYGPQGMWVPAGQAIGGYGPPPAGRGAPPP--------PPP--------- 261
AG P QG PQG P G PPP PPP PPP
Sbjct: 33 AGNP-----QGPSPQGGNKPQGPP-----PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPP 82
Query: 262 --FTSYIVSTPPG--GFPPPQGFPQGYGAPPQFSFGYGPPPP-------PPDQFAPPGVP 310
S +PPG PPPQG Q G PP GPPP PP P G P
Sbjct: 83 QGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPP 142
Query: 311 P------PPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYGLGSYSPAPPG 360
P P +P P PPP P PP +P P Q G P PPG
Sbjct: 143 PQGDKSRSPRSPPGKPQG-PPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPG 197
Score = 48.9 bits (115), Expect = 7e-06
Identities = 52/159 (32%), Positives = 56/159 (35%), Gaps = 42/159 (26%)
Query: 180 GKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPA 239
GKK + P K Q P G S+ P G PPP Q G PQG P
Sbjct: 187 GKKPQ---GPPPPGKPQGPPPQGDKSRSSQSPPGKPQG----PPP--QGGNQPQGPPPPP 237
Query: 240 GQAIGGYGPPPAGRGAPPPPPP------------FTSYIVSTPPG--------------G 273
G+ GPPP G P PPP S +PPG G
Sbjct: 238 GKP---QGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQG 294
Query: 274 FPPP-QGFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPP 311
PPP G PQ APP G PP P Q P PP
Sbjct: 295 PPPPAGGNPQQPQAPPA---GQPQGPPRPPQGGRPSRPP 330
Score = 44.7 bits (104), Expect = 1e-04
Identities = 41/120 (34%), Positives = 43/120 (35%), Gaps = 36/120 (30%)
Query: 264 SYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPP-PDQFAPP-------GVPPP--- 312
S I P G P PQG G PQ GPPPPP Q PP G PPP
Sbjct: 30 SLIAGNPQG--PSPQG-----GNKPQ-----GPPPPPGKPQGPPPQGGNKPQGPPPPGKP 77
Query: 313 ------------PATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYGLGSYSPAPPG 360
P +P P PPP P PP +P P Q G P PPG
Sbjct: 78 QGPPPQGDKSRSPRSPPGKPQG-PPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPG 136
Score = 37.0 bits (84), Expect = 0.029
Identities = 26/83 (31%), Positives = 28/83 (33%), Gaps = 11/83 (13%)
Query: 288 PQFSFGYGPPPPPPDQFAPPGVPPPPATP-------GAAPLAFPPPPSQAAP----DMSK 336
P G P P P G PPPP P G P PPP P D S+
Sbjct: 29 PSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSR 88
Query: 337 PPTAQPDFPYGQYGLGSYSPAPP 359
P + P P G G P P
Sbjct: 89 SPRSPPGKPQGPPPQGGNQPQGP 111
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.139 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,593,407
Number of Sequences: 37866
Number of extensions: 2138089
Number of successful extensions: 42047
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 1408
Number of HSP's that attempted gapping in prelim test: 10932
Number of HSP's gapped (non-prelim): 12678
length of query: 378
length of database: 18,247,518
effective HSP length: 104
effective length of query: 274
effective length of database: 14,309,454
effective search space: 3920790396
effective search space used: 3920790396
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.