Search of human proteins with 25470886

Search of human proteins with 25470886

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
         (407 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]         886   0.0  
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]         759   0.0  
gi|20373175 musashi 2 isoform a [Homo sapiens]                        177   1e-44
gi|4505255 musashi 1 [Homo sapiens]                                   172   6e-43
gi|25121993 musashi 2 isoform b [Homo sapiens]                        167   1e-41
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ...   162   7e-40
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor...   154   1e-37
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform...   154   1e-37
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ...   153   2e-37
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ...   152   5e-37
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ...   150   2e-36
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo...   145   5e-35
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b...   145   6e-35
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom...   143   3e-34
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom...   143   3e-34
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ...   142   4e-34
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap...   141   1e-33
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ...   140   2e-33
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ...   138   1e-32
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi...   137   2e-32
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc...   125   5e-29
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl...   125   7e-29
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl...   125   7e-29
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]               105   1e-22
gi|6678271 TAR DNA binding protein [Homo sapiens]                      94   2e-19
gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]             93   5e-19
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]              93   5e-19
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]         85   1e-16
gi|5454064 RNA binding motif protein 14 [Homo sapiens]                 84   3e-16
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre...    83   4e-16

>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
          Length = 407

 Score =  886 bits (2289), Expect = 0.0
 Identities = 407/407 (100%), Positives = 407/407 (100%)

Query: 1   MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
           MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD
Sbjct: 1   MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60

Query: 61  PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI 120
           PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI
Sbjct: 61  PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI 120

Query: 121 PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG 180
           PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG
Sbjct: 121 PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG 180

Query: 181 KKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG 240
           KKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG
Sbjct: 181 KKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG 240

Query: 241 QAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPP 300
           QAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPP
Sbjct: 241 QAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPP 300

Query: 301 PDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYAGYGQDLSGFG 360
           PDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYAGYGQDLSGFG
Sbjct: 301 PDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYAGYGQDLSGFG 360

Query: 361 QGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQGFHPYRR 407
           QGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQGFHPYRR
Sbjct: 361 QGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQGFHPYRR 407


>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
          Length = 378

 Score =  759 bits (1959), Expect = 0.0
 Identities = 349/349 (100%), Positives = 349/349 (100%)

Query: 1   MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
           MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD
Sbjct: 1   MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60

Query: 61  PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI 120
           PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI
Sbjct: 61  PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI 120

Query: 121 PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG 180
           PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG
Sbjct: 121 PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG 180

Query: 181 KKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG 240
           KKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG
Sbjct: 181 KKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAG 240

Query: 241 QAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPP 300
           QAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPP
Sbjct: 241 QAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPP 300

Query: 301 PDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQY 349
           PDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQY
Sbjct: 301 PDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQY 349


>gi|20373175 musashi 2 isoform a [Homo sapiens]
          Length = 328

 Score =  177 bits (450), Expect = 1e-44
 Identities = 109/310 (35%), Positives = 159/310 (51%), Gaps = 51/310 (16%)

Query: 3   NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62
           N    + GK+F+GGL W T+ ++LR YFS++GE+ +C++M+D TT +SRGFGFV F DP 
Sbjct: 14  NDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPA 73

Query: 63  CVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPH 122
            V  VL    H LD + IDPK   PR  QP+                +++ KIFVGG+  
Sbjct: 74  SVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMV--------------TRTKKIFVGGLSA 119

Query: 123 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK 182
           N    ++++YF++FG V + ++++D    R RGFGF+TFE+E  V++   +HFH+I  K 
Sbjct: 120 NTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKM 179

Query: 183 VEVKRAEPRD------SKSQAPGQPGASQ-----WGSRVVPNAANGWAGQPPPTWQQGYG 231
           VE K+A+P++      ++ +A G P          G    PN    + G+  P +   YG
Sbjct: 180 VECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATY-GRGYPGFAPSYG 238

Query: 232 PQGMWVPAGQAIGGYGP-----PPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGA 286
            Q    PA      YGP       A RG+   P           PGGFP       G  +
Sbjct: 239 YQFPGFPA----AAYGPVAAAAVAAARGSGSNP---------ARPGGFP-------GANS 278

Query: 287 PPQFSFGYGP 296
           P   +  YGP
Sbjct: 279 PGPVADLYGP 288


>gi|4505255 musashi 1 [Homo sapiens]
          Length = 362

 Score =  172 bits (435), Expect = 6e-43
 Identities = 86/202 (42%), Positives = 124/202 (61%), Gaps = 18/202 (8%)

Query: 11  KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
           K+F+GGL W TTQE LR YF Q+GEV +C++M+D  T +SRGFGFV F D   V  VLA 
Sbjct: 21  KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80

Query: 71  RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
             H LD + IDPK   PR  QP+                +++ KIFVGG+  N    +++
Sbjct: 81  SRHELDSKTIDPKVAFPRRAQPKMV--------------TRTKKIFVGGLSVNTTVEDVK 126

Query: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
           +YF++FG V + ++++D    R RGFGF+TFE E  V++   +HFH+I  K VE K+A+P
Sbjct: 127 QYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQP 186

Query: 191 RDSKSQAPGQPGASQWGSRVVP 212
           ++  S      G+++  SRV+P
Sbjct: 187 KEVMSPT----GSARGRSRVMP 204


>gi|25121993 musashi 2 isoform b [Homo sapiens]
          Length = 251

 Score =  167 bits (424), Expect = 1e-41
 Identities = 77/182 (42%), Positives = 117/182 (64%), Gaps = 14/182 (7%)

Query: 11  KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
           K+F+GGL W T+ ++LR YFS++GE+ +C++M+D TT +SRGFGFV F DP  V  VL  
Sbjct: 18  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77

Query: 71  RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
             H LD + IDPK   PR  QP+                +++ KIFVGG+  N    +++
Sbjct: 78  PHHELDSKTIDPKVAFPRRAQPKMV--------------TRTKKIFVGGLSANTVVEDVK 123

Query: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
           +YF++FG V + ++++D    R RGFGF+TFE+E  V++   +HFH+I  K VE K+A+P
Sbjct: 124 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQP 183

Query: 191 RD 192
           ++
Sbjct: 184 KE 185



 Score = 72.0 bits (175), Expect = 9e-13
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
           S S+K+F+GG+        LR+YF KFG + E +++ D   +R RGFGF+TF D  SVD+
Sbjct: 14  SPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 73

Query: 170 AVNMHFHDIMGKKVEVKRAEPR 191
            +    H++  K ++ K A PR
Sbjct: 74  VLGQPHHELDSKTIDPKVAFPR 95


>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
           [Homo sapiens]
          Length = 332

 Score =  162 bits (409), Expect = 7e-40
 Identities = 94/254 (37%), Positives = 130/254 (51%), Gaps = 26/254 (10%)

Query: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
           ++ GK+FVGGL W T+++ L+ YF+++GEVVDC I  D  T +SRGFGF+ FKD   V  
Sbjct: 67  EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126

Query: 67  VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
           VL  + H LDGR IDPK        P +                   KIFVGG+     E
Sbjct: 127 VLDQKEHRLDGRVIDPKKAMAMKKDPVK-------------------KIFVGGLNPEATE 167

Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
            ++REYF +FG +  + +  D +  + RGF FITF++E+ V + +   FH + G K E+K
Sbjct: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227

Query: 187 RAEPRDSKSQAPGQPGASQWGSRVVPN---AANGWAGQPPPTWQQGYGPQGMWVPAGQAI 243
            A+P++   Q   Q G+   G+R   N      G  G    +W QGYG    W       
Sbjct: 228 VAQPKEVYQQQ--QYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYG--NYWNQGYGYQ 283

Query: 244 GGYGPPPAGRGAPP 257
            GYGP   G    P
Sbjct: 284 QGYGPGYGGYDYSP 297



 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 31/90 (34%), Positives = 52/90 (57%)

Query: 99  EGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
           EG Q     +   + K+FVGG+  +  + +L++YF KFG V +  +  D    R RGFGF
Sbjct: 56  EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 115

Query: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 188
           I F+D  SV++ ++   H + G+ ++ K+A
Sbjct: 116 ILFKDAASVEKVLDQKEHRLDGRVIDPKKA 145


>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
           B1 [Homo sapiens]
          Length = 353

 Score =  154 bits (389), Expect = 1e-37
 Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 18/250 (7%)

Query: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
           ++  KLF+GGL + TT+E+LR+Y+ Q+G++ DCV+M+D  + +SRGFGFV F     V  
Sbjct: 18  EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 77

Query: 67  VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
            +A+RPH++DGR ++PK    R             + G    +    K+FVGGI  +  E
Sbjct: 78  AMAARPHSIDGRVVEPKRAVARE------------ESGKPGAHVTVKKLFVGGIKEDTEE 125

Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
             LR+YF+++G +  + +I D +  + RGFGF+TF+D   VD+ V   +H I G   EV+
Sbjct: 126 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVR 185

Query: 187 RA----EPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQA 242
           +A    E ++ +S   G+ G   +G          +   P   ++ G    G     G  
Sbjct: 186 KALSRQEMQEVQSSRSGRGGNFGFGDS--RGGGGNFGPGPGSNFRGGSDGYGSGRGFGDG 243

Query: 243 IGGYGPPPAG 252
             GYG  P G
Sbjct: 244 YNGYGGGPGG 253



 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 4/98 (4%)

Query: 106 RSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 165
           + +  +  K+F+GG+     E  LR Y++++G +T+ V++ D   +R RGFGF+TF    
Sbjct: 14  KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 73

Query: 166 SVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGA 203
            VD A+    H I G+ VE KRA  R+      G+PGA
Sbjct: 74  EVDAAMAARPHSIDGRVVEPKRAVAREES----GKPGA 107



 Score = 31.2 bits (69), Expect = 1.8
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 346 YGQYAGYGQDLSGFG--QGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQG 401
           YG   G+G   +G+G   G  +    P   GG    G GGP  G  G G G  ++  G
Sbjct: 234 YGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYG 291


>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
           [Homo sapiens]
          Length = 341

 Score =  154 bits (389), Expect = 1e-37
 Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 18/250 (7%)

Query: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
           ++  KLF+GGL + TT+E+LR+Y+ Q+G++ DCV+M+D  + +SRGFGFV F     V  
Sbjct: 6   EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 65

Query: 67  VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
            +A+RPH++DGR ++PK    R             + G    +    K+FVGGI  +  E
Sbjct: 66  AMAARPHSIDGRVVEPKRAVARE------------ESGKPGAHVTVKKLFVGGIKEDTEE 113

Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
             LR+YF+++G +  + +I D +  + RGFGF+TF+D   VD+ V   +H I G   EV+
Sbjct: 114 HHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVR 173

Query: 187 RA----EPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQA 242
           +A    E ++ +S   G+ G   +G          +   P   ++ G    G     G  
Sbjct: 174 KALSRQEMQEVQSSRSGRGGNFGFGDS--RGGGGNFGPGPGSNFRGGSDGYGSGRGFGDG 231

Query: 243 IGGYGPPPAG 252
             GYG  P G
Sbjct: 232 YNGYGGGPGG 241



 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 4/96 (4%)

Query: 108 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167
           +  +  K+F+GG+     E  LR Y++++G +T+ V++ D   +R RGFGF+TF     V
Sbjct: 4   EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 63

Query: 168 DQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGA 203
           D A+    H I G+ VE KRA  R+      G+PGA
Sbjct: 64  DAAMAARPHSIDGRVVEPKRAVAREES----GKPGA 95



 Score = 31.2 bits (69), Expect = 1.8
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 346 YGQYAGYGQDLSGFG--QGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQG 401
           YG   G+G   +G+G   G  +    P   GG    G GGP  G  G G G  ++  G
Sbjct: 222 YGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYG 279


>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
           [Homo sapiens]
          Length = 336

 Score =  153 bits (387), Expect = 2e-37
 Identities = 93/249 (37%), Positives = 128/249 (51%), Gaps = 30/249 (12%)

Query: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
           ++ GK+F+GGL W TT++ L+ YFS++GEVVDC +  D  T +SRGFGFV FK+   V  
Sbjct: 75  EDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 134

Query: 67  VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
           V+  + H L+G+ IDPK            R K    K P        KIFVGG+  +  E
Sbjct: 135 VMDQKEHKLNGKVIDPK------------RAKAMKTKEP------VKKIFVGGLSPDTPE 176

Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
            ++REYF  FG V  + +  D +  + RGF FITF++E+ V + +   +H++   K E+K
Sbjct: 177 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 236

Query: 187 RAEPRDSKSQAPGQPGASQWGSR-VVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGG 245
            A  ++   Q        QWGSR      A G  G P   W QGY     W    Q  G 
Sbjct: 237 VAMSKEQYQQ------QQQWGSRGGFAGRARGRGGGPSQNWNQGY--SNYW---NQGYGN 285

Query: 246 YGPPPAGRG 254
           YG    G G
Sbjct: 286 YGYNSQGYG 294



 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 33/96 (34%), Positives = 58/96 (60%), Gaps = 4/96 (4%)

Query: 103 KGPRSDNSKSN----KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
           +G + D SK+     K+F+GG+  +  + +L++YF KFG V +  +  D    R RGFGF
Sbjct: 64  EGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 123

Query: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 194
           + F++ +SVD+ ++   H + GK ++ KRA+   +K
Sbjct: 124 VLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 159


>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
           [Homo sapiens]
          Length = 285

 Score =  152 bits (384), Expect = 5e-37
 Identities = 84/225 (37%), Positives = 120/225 (53%), Gaps = 21/225 (9%)

Query: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
           ++ GK+FVGGL W T+++ L+ YF+++GEVVDC I  D  T +SRGFGF+ FKD   V  
Sbjct: 67  EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126

Query: 67  VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
           VL  + H LDGR IDPK        P +                   KIFVGG+     E
Sbjct: 127 VLDQKEHRLDGRVIDPKKAMAMKKDPVK-------------------KIFVGGLNPEATE 167

Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
            ++REYF +FG +  + +  D +  + RGF FITF++E+ V + +   FH + G K E+K
Sbjct: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227

Query: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYG 231
            A+P++   Q   Q G+   G+R   N  +G  G         YG
Sbjct: 228 VAQPKEVYQQQ--QYGSGGRGNRNRGNRGSGGGGGGGGQGSTNYG 270



 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 31/90 (34%), Positives = 52/90 (57%)

Query: 99  EGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
           EG Q     +   + K+FVGG+  +  + +L++YF KFG V +  +  D    R RGFGF
Sbjct: 56  EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 115

Query: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 188
           I F+D  SV++ ++   H + G+ ++ K+A
Sbjct: 116 ILFKDAASVEKVLDQKEHRLDGRVIDPKKA 145


>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
           [Homo sapiens]
          Length = 355

 Score =  150 bits (380), Expect = 2e-36
 Identities = 92/245 (37%), Positives = 125/245 (51%), Gaps = 30/245 (12%)

Query: 11  KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
           K+F+GGL W TT++ L+ YFS++GEVVDC +  D  T +SRGFGFV FK+   V  V+  
Sbjct: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157

Query: 71  RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
           + H L+G+ IDPK            R K    K P        KIFVGG+  +  E ++R
Sbjct: 158 KEHKLNGKVIDPK------------RAKAMKTKEP------VKKIFVGGLSPDTPEEKIR 199

Query: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
           EYF  FG V  + +  D +  + RGF FITF++E+ V + +   +H++   K E+K A  
Sbjct: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259

Query: 191 RDSKSQAPGQPGASQWGSR-VVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPP 249
           ++   Q        QWGSR      A G  G P   W QGY     W    Q  G YG  
Sbjct: 260 KEQYQQ------QQQWGSRGGFAGRARGRGGGPSQNWNQGY--SNYW---NQGYGNYGYN 308

Query: 250 PAGRG 254
             G G
Sbjct: 309 SQGYG 313



 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
           + + K+FVGGL   T +E +R YF  +GEV    +  D  TN+ RGF F+ FK+   V  
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238

Query: 67  VLASRPHTLDGRNIDPKPCTPR-GMQPERTRPKEGW 101
           ++  + H     N+    C  +  M  E+ + ++ W
Sbjct: 239 IMEKKYH-----NVGLSKCEIKVAMSKEQYQQQQQW 269


>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
           sapiens]
          Length = 420

 Score =  145 bits (367), Expect = 5e-35
 Identities = 87/247 (35%), Positives = 120/247 (48%), Gaps = 28/247 (11%)

Query: 10  GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
           GK+F+GGL W T+++ L  Y S++GEVVDC I  D  T +SRGFGFV FKD   V  VL 
Sbjct: 148 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 207

Query: 70  SRPHTLDGRNIDPKPCTP-RGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETE 128
            + H LDG+ IDPK     +G +P +                   K+FVGG+  +  E +
Sbjct: 208 LKEHKLDGKLIDPKRAKALKGKEPPK-------------------KVFVGGLSPDTSEEQ 248

Query: 129 LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 188
           ++EYF  FG +  + +  D +    RGF FIT+ DE+ V + +   +H I   K E+K A
Sbjct: 249 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 308

Query: 189 EP----RDSKSQAPGQPGASQWGSRVVPNAANG----WAGQPPPTWQQGYGPQGMWVPAG 240
           +P    R  + Q  G  GA+  G         G    W       + QGYG         
Sbjct: 309 QPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGD 368

Query: 241 QAIGGYG 247
           Q   GYG
Sbjct: 369 QNYSGYG 375



 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 31/96 (32%), Positives = 51/96 (53%)

Query: 99  EGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
           EG +     +     K+F+GG+  +  + +L EY  +FG V +  +  D    R RGFGF
Sbjct: 134 EGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGF 193

Query: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 194
           + F+D  SVD+ + +  H + GK ++ KRA+    K
Sbjct: 194 VLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGK 229



 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 4/102 (3%)

Query: 5   GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
           G +   K+FVGGL   T++E ++ YF  +GE+ +  +  D  TN+ RGF F+ + D   V
Sbjct: 228 GKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPV 287

Query: 65  GTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 106
             +L SR H +     + K   P+    E  R ++  QKG R
Sbjct: 288 KKLLESRYHQIGSGKCEIKVAQPK----EVYRQQQQQQKGGR 325



 Score = 30.4 bits (67), Expect = 3.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 349 YAGYGQDLSGFGQGFSDPSQQPPSYGGPSVPG 380
           Y GY     G+GQG++D S Q  +YG  S  G
Sbjct: 379 YTGYNYGNYGYGQGYADYSGQQSTYGKASRGG 410


>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
           [Homo sapiens]
          Length = 372

 Score =  145 bits (366), Expect = 6e-35
 Identities = 95/294 (32%), Positives = 144/294 (48%), Gaps = 34/294 (11%)

Query: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
           +++ KLF+GGL + TT E+LRS+F Q+G + DCV+M+D  T +SRGFGFV +     V  
Sbjct: 11  EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70

Query: 67  VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
            + +RPH +DGR ++PK    R    +  RP           +    KIFVGGI  +  E
Sbjct: 71  AMNARPHKVDGRVVEPKRAVSR---EDSQRP---------GAHLTVKKIFVGGIKEDTEE 118

Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
             LR+YF+++G +  + ++ D    + RGF F+TF+D  SVD+ V   +H + G   EV+
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178

Query: 187 RA----EPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQA 242
           +A    E   + S   G+ G+  +G         G+ G         +G  G +      
Sbjct: 179 KALSKQEMASASSSQRGRSGSGNFGG----GRGGGFGG------NDNFGRGGNF----SG 224

Query: 243 IGGYGPPPAGRGAPPPPPPFTSY-IVSTPPGGFPPPQGFPQGYGAPPQFSFGYG 295
            GG+G    G G       +  +       GG P   G  +GYG+  Q   GYG
Sbjct: 225 RGGFGGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQ---GYG 275



 Score = 30.8 bits (68), Expect = 2.3
 Identities = 18/57 (31%), Positives = 23/57 (40%)

Query: 347 GQYAGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQGFH 403
           G Y G G   +GFG         P   GG    GSGG   G  G G G + +   ++
Sbjct: 235 GGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYN 291



 Score = 30.0 bits (66), Expect = 3.9
 Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 347 GQYAGYGQDLSGFGQGFSDPSQQPPSYG--GPSVPGSGGPPA----GGSGFGRGQNHNVQ 400
           G Y G G   SG  +G+    Q    YG  G    GSG   +    GG GFG G   N  
Sbjct: 251 GGYGGGGPGYSGGSRGYGSGGQ---GYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFG 307

Query: 401 GFHPY 405
           G   Y
Sbjct: 308 GGGSY 312



 Score = 29.6 bits (65), Expect = 5.1
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 351 GYGQDLSGFGQGFSDPSQQPPSYGGPSV-----PGSGGPPAGGSG--FGRGQNHN 398
           GY     G+G G      Q   YGG         G GG   GGSG  FG G ++N
Sbjct: 259 GYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYN 313


>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score =  143 bits (360), Expect = 3e-34
 Identities = 77/211 (36%), Positives = 117/211 (55%), Gaps = 16/211 (7%)

Query: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
           +++ KLF+GGL + TT E+LRS+F Q+G + DCV+M+D  T +SRGFGFV +     V  
Sbjct: 11  EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70

Query: 67  VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
            + + PH +DGR ++PK    R    +  RP           +    KIFVGGI  +  E
Sbjct: 71  AMNTTPHKVDGRVVEPKRAVSR---EDSQRP---------GAHLTVKKIFVGGIKEDTEE 118

Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
             LR+YF+++G +  + ++ D    + RGF F+TF+D  SVD+ V   +H + G   EV+
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVR 178

Query: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANG 217
           +A P+   + A     +SQ G R   N   G
Sbjct: 179 KALPKQEMASA----SSSQRGRRGSGNFGGG 205



 Score = 29.3 bits (64), Expect = 6.7
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 10/63 (15%)

Query: 349 YAGYGQDLSGFGQG-----FSDPSQQPPSYG---GPSVPGSGGPPAGGSG--FGRGQNHN 398
           Y G+G D S FG G     F + + Q  ++G   G +  G    P GG G  F + QN  
Sbjct: 244 YNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQG 303

Query: 399 VQG 401
             G
Sbjct: 304 GYG 306


>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score =  143 bits (360), Expect = 3e-34
 Identities = 77/211 (36%), Positives = 117/211 (55%), Gaps = 16/211 (7%)

Query: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
           +++ KLF+GGL + TT E+LRS+F Q+G + DCV+M+D  T +SRGFGFV +     V  
Sbjct: 11  EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70

Query: 67  VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
            + + PH +DGR ++PK    R    +  RP           +    KIFVGGI  +  E
Sbjct: 71  AMNTTPHKVDGRVVEPKRAVSR---EDSQRP---------GAHLTVKKIFVGGIKEDTEE 118

Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
             LR+YF+++G +  + ++ D    + RGF F+TF+D  SVD+ V   +H + G   EV+
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVR 178

Query: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANG 217
           +A P+   + A     +SQ G R   N   G
Sbjct: 179 KALPKQEMASA----SSSQRGRRGSGNFGGG 205



 Score = 29.3 bits (64), Expect = 6.7
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 10/63 (15%)

Query: 349 YAGYGQDLSGFGQG-----FSDPSQQPPSYG---GPSVPGSGGPPAGGSG--FGRGQNHN 398
           Y G+G D S FG G     F + + Q  ++G   G +  G    P GG G  F + QN  
Sbjct: 244 YNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQG 303

Query: 399 VQG 401
             G
Sbjct: 304 GYG 306


>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
           [Homo sapiens]
          Length = 320

 Score =  142 bits (359), Expect = 4e-34
 Identities = 75/205 (36%), Positives = 116/205 (56%), Gaps = 16/205 (7%)

Query: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
           +++ KLF+GGL + TT E+LRS+F Q+G + DCV+M+D  T +SRGFGFV +     V  
Sbjct: 11  EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70

Query: 67  VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
            + +RPH +DGR ++PK    R    +  RP           +    KIFVGGI  +  E
Sbjct: 71  AMNARPHKVDGRVVEPKRAVSR---EDSQRP---------GAHLTVKKIFVGGIKEDTEE 118

Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
             LR+YF+++G +  + ++ D    + RGF F+TF+D  SVD+ V   +H + G   EV+
Sbjct: 119 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR 178

Query: 187 RA----EPRDSKSQAPGQPGASQWG 207
           +A    E   + S   G+ G+  +G
Sbjct: 179 KALSKQEMASASSSQRGRSGSGNFG 203


>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
           sapiens]
          Length = 378

 Score =  141 bits (355), Expect = 1e-33
 Identities = 71/196 (36%), Positives = 111/196 (56%), Gaps = 12/196 (6%)

Query: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
           +++ KLF+GGL + TT ++LR +F ++G + DCV+M+D  T +SRGFGFV +     V  
Sbjct: 32  EQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDA 91

Query: 67  VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
            + +RPH +DGR ++PK    R    +  +P           +    KIFVGGI  +  E
Sbjct: 92  AMCARPHKVDGRVVEPKRAVSR---EDSVKP---------GAHLTVKKIFVGGIKEDTEE 139

Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
             LR+YF+K+G +  + ++ D +  + RGF F+TF+D  +VD+ V   +H I G   EVK
Sbjct: 140 YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVK 199

Query: 187 RAEPRDSKSQAPGQPG 202
           +A  +     A  Q G
Sbjct: 200 KALSKQEMQSAGSQRG 215



 Score = 72.8 bits (177), Expect = 5e-13
 Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 6/122 (4%)

Query: 80  IDPKPCTPRGMQPE--RTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFG 137
           + P P  P   QP+  R R + G +     +  +  K+F+GG+     +  LRE+F+K+G
Sbjct: 3   VKPPPGRP---QPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWG 59

Query: 138 VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQA 197
            +T+ V++ D + +R RGFGF+T+   + VD A+    H + G+ VE KRA  R+  S  
Sbjct: 60  TLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSRED-SVK 118

Query: 198 PG 199
           PG
Sbjct: 119 PG 120



 Score = 31.2 bits (69), Expect = 1.8
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 347 GQYAGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGF-GRGQNHNVQG 401
           G Y G+G D   +G G    S+     GGP     GG   GG G+ G  +  N  G
Sbjct: 265 GGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGG 320


>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
           [Homo sapiens]
          Length = 287

 Score =  140 bits (354), Expect = 2e-33
 Identities = 85/228 (37%), Positives = 122/228 (53%), Gaps = 33/228 (14%)

Query: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
           ++ GK+F+GGL W TT++ L+ YFS++GEVVDC +  D  T +SRGFGFV FK+   V  
Sbjct: 75  EDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 134

Query: 67  VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGE 126
           V+  + H L+G+ IDPK            R K    K P        KIFVGG+  +  E
Sbjct: 135 VMDQKEHKLNGKVIDPK------------RAKAMKTKEP------VKKIFVGGLSPDTPE 176

Query: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
            ++REYF  FG V  + +  D +  + RGF FITF++E+ V + +   +H++   K E+K
Sbjct: 177 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 236

Query: 187 RAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQP---PPTWQQGYG 231
            A  ++   Q        QWGSR       G+AG+        Q GYG
Sbjct: 237 VAMSKEQYQQ------QQQWGSR------GGFAGRARGRGGDQQSGYG 272



 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 33/96 (34%), Positives = 58/96 (60%), Gaps = 4/96 (4%)

Query: 103 KGPRSDNSKSN----KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158
           +G + D SK+     K+F+GG+  +  + +L++YF KFG V +  +  D    R RGFGF
Sbjct: 64  EGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 123

Query: 159 ITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 194
           + F++ +SVD+ ++   H + GK ++ KRA+   +K
Sbjct: 124 VLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTK 159


>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
           [Homo sapiens]
          Length = 306

 Score =  138 bits (347), Expect = 1e-32
 Identities = 84/224 (37%), Positives = 119/224 (53%), Gaps = 33/224 (14%)

Query: 11  KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
           K+F+GGL W TT++ L+ YFS++GEVVDC +  D  T +SRGFGFV FK+   V  V+  
Sbjct: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157

Query: 71  RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
           + H L+G+ IDPK            R K    K P        KIFVGG+  +  E ++R
Sbjct: 158 KEHKLNGKVIDPK------------RAKAMKTKEP------VKKIFVGGLSPDTPEEKIR 199

Query: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
           EYF  FG V  + +  D +  + RGF FITF++E+ V + +   +H++   K E+K A  
Sbjct: 200 EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMS 259

Query: 191 RDSKSQAPGQPGASQWGSRVVPNAANGWAGQP---PPTWQQGYG 231
           ++   Q        QWGSR       G+AG+        Q GYG
Sbjct: 260 KEQYQQ------QQQWGSR------GGFAGRARGRGGDQQSGYG 291



 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 6/96 (6%)

Query: 7   DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
           + + K+FVGGL   T +E +R YF  +GEV    +  D  TN+ RGF F+ FK+   V  
Sbjct: 179 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238

Query: 67  VLASRPHTLDGRNIDPKPCTPR-GMQPERTRPKEGW 101
           ++  + H     N+    C  +  M  E+ + ++ W
Sbjct: 239 IMEKKYH-----NVGLSKCEIKVAMSKEQYQQQQQW 269


>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
           sapiens]
          Length = 305

 Score =  137 bits (344), Expect = 2e-32
 Identities = 95/306 (31%), Positives = 146/306 (47%), Gaps = 49/306 (16%)

Query: 1   MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
           M NS   ++ KLF+GGL+  T++  LR +F  +G + DCV++ +  T +SR FGFV + +
Sbjct: 1   MENS---QLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSN 57

Query: 61  PNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGI 120
                  +A+ PH +DG  ++ K    R    +  RP           ++K  K+FVGG+
Sbjct: 58  VEEADAAMAASPHAVDGNTVELKRAVSR---EDSARP---------GAHAKVKKLFVGGL 105

Query: 121 PHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMG 180
             +  E +L E+F +FG V +  +I D +  + RGFGF+ F++  + D+A  + FH I G
Sbjct: 106 KGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQG 165

Query: 181 KKVEVKRAEPRD----------SKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGY 230
            +VEVK+A P++          S+S   G+ G  + G R     + G  G        GY
Sbjct: 166 HRVEVKKAVPKEDIYSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGG--------GY 217

Query: 231 GPQGMWVPAGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQF 290
              G +   G   GGY     G G        +SY      GG     GF  G+G+  Q 
Sbjct: 218 NSYGGY--GGGGGGGYNAYGGGGGG-------SSY------GGSDYGNGF-GGFGSYSQH 261

Query: 291 SFGYGP 296
              YGP
Sbjct: 262 QSSYGP 267



 Score = 29.6 bits (65), Expect = 5.1
 Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 346 YGQYAGYGQDLS--------GFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGSGFGRGQNH 397
           Y  Y G G   S        GFG GF   SQ   SYG P   G GG   G S  GR  + 
Sbjct: 231 YNAYGGGGGGSSYGGSDYGNGFG-GFGSYSQHQSSYG-PMKSGGGGGGGGSSWGGRSNSG 288

Query: 398 NVQG 401
             +G
Sbjct: 289 PYRG 292


>gi|169203146 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  125 bits (315), Expect = 5e-29
 Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 18/240 (7%)

Query: 8   EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
           ++ KLF+GGL + T+ E+LRS+  Q+G + +CV+M+D  TN+SRGFGFV +     V   
Sbjct: 12  QLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAA 71

Query: 68  LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127
           + +RPH + GR ++PK    R    +  RP                KIFVGGI  +  E 
Sbjct: 72  MNARPHKMGGRVVEPKTAVSR---EDSQRP---------GAYLTVKKIFVGGIKEDTEEH 119

Query: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
            LR+Y++++G    + ++ D    + R F F+TF++  S D+ V   +H + G   EV++
Sbjct: 120 PLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRK 179

Query: 188 AEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYG 247
           A  +   + AP    +             G++G         +G  G +   G   G +G
Sbjct: 180 ALSKQKMASAPSSQRSRSGSGNFGGGRGGGFSG------NDNFGHGGNFSGCGGLGGSHG 233


>gi|89035135 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  125 bits (314), Expect = 7e-29
 Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 18/240 (7%)

Query: 8   EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
           ++ KLF+GGL + T+ E+LRS+  Q+G + +CV+M+D  TN+SRGFGFV +     V   
Sbjct: 12  QLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAA 71

Query: 68  LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127
           + +RPH + GR ++PK    R    +  RP                KIFVGGI  +  E 
Sbjct: 72  MNARPHKMGGRVVEPKTAVSR---EDSQRP---------GAYLTVKKIFVGGIKEDTEEH 119

Query: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
            LR+Y++++G    + ++ D    + R F F+TF++  S D+ V   +H + G   EV++
Sbjct: 120 PLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRK 179

Query: 188 AEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYG 247
           A  +   + AP    +             G++G         +G  G +   G   G +G
Sbjct: 180 ALSKQKMASAPSSQRSRSGSGNFGGGRGGGFSG------NDNFGHGGNFSGCGGFGGSHG 233


>gi|89034333 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  125 bits (314), Expect = 7e-29
 Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 18/240 (7%)

Query: 8   EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67
           ++ KLF+GGL + T+ E+LRS+  Q+G + +CV+M+D  TN+SRGFGFV +     V   
Sbjct: 12  QLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAA 71

Query: 68  LASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127
           + +RPH + GR ++PK    R    +  RP                KIFVGGI  +  E 
Sbjct: 72  MNARPHKMGGRVVEPKTAVSR---EDSQRP---------GAYLTVKKIFVGGIKEDTEEH 119

Query: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
            LR+Y++++G    + ++ D    + R F F+TF++  S D+ V   +H + G   EV++
Sbjct: 120 PLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRK 179

Query: 188 AEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYG 247
           A  +   + AP    +             G++G         +G  G +   G   G +G
Sbjct: 180 ALSKQKMASAPSSQRSRSGSGNFGGGRGGGFSG------NDNFGHGGNFSGCGGFGGSHG 233


>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
          Length = 424

 Score =  105 bits (261), Expect = 1e-22
 Identities = 115/411 (27%), Positives = 155/411 (37%), Gaps = 86/411 (20%)

Query: 12  LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF-KDPNCVGTVLAS 70
           ++VGGLD   ++  L   F Q G VV+  + KD+ T Q +G+GFV+F  + +    +   
Sbjct: 15  VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74

Query: 71  RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELR 130
               L G+             P R        K    +      IF+G +     E  L 
Sbjct: 75  NMIKLYGK-------------PIRVNKASAHNK----NLDVGANIFIGNLDPEIDEKLLY 117

Query: 131 EYFKKFGVVTEVVMIY-DAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 188
           + F  FGV+ +   I  D +    +G+ FI F    + D A+  M+   +  + + V  A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177

Query: 189 EPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGP 248
             +DSK +  G              A    A Q P    Q   P  ++  A         
Sbjct: 178 FKKDSKGERHGSA------------AERLLAAQNP--LSQADRPHQLFADA--------- 214

Query: 249 PPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQFAPPG 308
                   PPPP   + +VS+   G PPP       G PP  SF   PPP PP    PPG
Sbjct: 215 --------PPPPSAPNPVVSSLGSGLPPP-------GMPPPGSF---PPPVPPPGALPPG 256

Query: 309 V----PPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQP---DFPYG--QYAGYGQ-DLSG 358
           +    PPPP  PGAA      PPS   P    P         FP G   + G  Q  L+ 
Sbjct: 257 IPPAMPPPPMPPGAAGHG---PPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAH 313

Query: 359 FG-QGFSDPSQQPPSYGG-------PSVPGSGGPPAG----GSGFGRGQNH 397
            G  G   P   PP  GG       P +P  G PP G    G  FG    H
Sbjct: 314 HGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSPMGH 364



 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 43/126 (34%), Positives = 49/126 (38%), Gaps = 18/126 (14%)

Query: 220 GQPPPTWQQ----GYGPQGMWVPAGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPPGGFP 275
           G P P   Q     +GP G+  P        GPP +G   PP PPP   +    PP G P
Sbjct: 300 GMPHPGMSQMQLAHHGPHGLGHPHA------GPPGSGGQPPPRPPPGMPH-PGPPPMGMP 352

Query: 276 P---PQGFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAP 332
           P   P G P G+  P       GPPP  P    P G   PP  P       P PP +  P
Sbjct: 353 PRGPPFGSPMGHPGPMPPHGMRGPPPLMP----PHGYTGPPRPPPYGYQRGPLPPPRPTP 408

Query: 333 DMSKPP 338
               PP
Sbjct: 409 RPPVPP 414



 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 104 GPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 163
           GP S+ ++   ++VGG+     E  L E F + G V    M  D    + +G+GF+ F  
Sbjct: 4   GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 63

Query: 164 EQSVDQAVN-MHFHDIMGKKVEVKRA 188
           E+  D A+  M+   + GK + V +A
Sbjct: 64  EEDADYAIKIMNMIKLYGKPIRVNKA 89



 Score = 37.0 bits (84), Expect = 0.032
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 2   NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCV-IMKDKTTNQSRGFGFVKF 58
           +N   D    +F+G LD    ++ L   FS +G ++    IM+D  T  S+G+ F+ F
Sbjct: 92  HNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149


>gi|6678271 TAR DNA binding protein [Homo sapiens]
          Length = 414

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 24/186 (12%)

Query: 12  LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
           L V GL W TT++ L+ YFS +GEV+   + KD  T  S+GFGFV+F +      V++ R
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165

Query: 72  PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELRE 131
            H +DGR  D K    +  Q E  R               S K+FVG    +  E ELRE
Sbjct: 166 -HMIDGRWCDCKLPNSKQSQDEPLR---------------SRKVFVGRCTEDMTEDELRE 209

Query: 132 YFKKFGVVTEVVMIYDAEKQRP-RGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 190
           +F ++G V +V +       +P R F F+TF D+Q + Q++      I G  V +  AEP
Sbjct: 210 FFSQYGDVMDVFI------PKPFRAFAFVTFADDQ-IAQSLCGEDLIIKGISVHISNAEP 262

Query: 191 RDSKSQ 196
           + + ++
Sbjct: 263 KHNSNR 268



 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 11/110 (10%)

Query: 97  PKEGWQKGPRSDNS----------KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIY 146
           PK+  +K   +D S          K++ + V G+P    E +L+EYF  FG V  V +  
Sbjct: 78  PKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK 137

Query: 147 DAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQ 196
           D +    +GFGF+ F + ++  + ++   H I G+  + K    + S+ +
Sbjct: 138 DLKTGHSKGFGFVRFTEYETQVKVMSQR-HMIDGRWCDCKLPNSKQSQDE 186



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 11  KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
           K+FVG      T++ LR +FSQYG+V+D  I K       R F FV F D
Sbjct: 192 KVFVGRCTEDMTEDELREFFSQYGDVMDVFIPK-----PFRAFAFVTFAD 236


>gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]
          Length = 392

 Score = 92.8 bits (229), Expect = 5e-19
 Identities = 75/271 (27%), Positives = 123/271 (45%), Gaps = 28/271 (10%)

Query: 12  LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCVGTVLAS 70
           +FVG L    T E ++S F+ +G++ D  ++KD  T +S+G+GFV F +  +    ++  
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175

Query: 71  RPHTLDGRNI-----DPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCG 125
               L GR I       KP  P+  Q   T+    ++      + K+  ++ GGI     
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLR-FEDVVNQSSPKNCTVYCGGIASGLT 234

Query: 126 ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVE 184
           +  +R+ F  FG + E+ +  +      +G+ F+ F   +S   A V+++   I G  V+
Sbjct: 235 DQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288

Query: 185 VKRAEPRDSKSQAPGQPGASQWG--SRVVPN-------AANGWAGQPPPTWQQGYGPQGM 235
               +     ++   Q   SQWG  S+V  N        ANGW   P   + Q +  QG 
Sbjct: 289 CYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGF 348

Query: 236 WV---PAGQAIGGYGPPPAGRGAPPP--PPP 261
            V   P+   +GG+G  P    APPP  PPP
Sbjct: 349 GVDQSPSAAWMGGFGAQPPQGQAPPPVIPPP 379



 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 26/174 (14%)

Query: 12  LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKD----KTTNQSRGFGFVKF--KDPNCVG 65
           L+VG L    T+  +   FSQ G    C ++ +    +  N S GF  ++    DP C  
Sbjct: 11  LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70

Query: 66  TVLASRPHT-----LDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRS---DNSKSNKIFV 117
                R        ++GR I  K              K  W   P S   D S    +FV
Sbjct: 71  EFYEHRDAAAALAAMNGRKILGKEV------------KVNWATTPSSQKKDTSNHFHVFV 118

Query: 118 GGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171
           G +       +++  F  FG +++  ++ D    + +G+GF++F ++   + A+
Sbjct: 119 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 172


>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
          Length = 375

 Score = 92.8 bits (229), Expect = 5e-19
 Identities = 75/271 (27%), Positives = 123/271 (45%), Gaps = 28/271 (10%)

Query: 12  LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCVGTVLAS 70
           +FVG L    T E ++S F+ +G++ D  ++KD  T +S+G+GFV F +  +    ++  
Sbjct: 99  VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158

Query: 71  RPHTLDGRNI-----DPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCG 125
               L GR I       KP  P+  Q   T+    ++      + K+  ++ GGI     
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLR-FEDVVNQSSPKNCTVYCGGIASGLT 217

Query: 126 ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVE 184
           +  +R+ F  FG + E+ +  +      +G+ F+ F   +S   A V+++   I G  V+
Sbjct: 218 DQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 271

Query: 185 VKRAEPRDSKSQAPGQPGASQWG--SRVVPN-------AANGWAGQPPPTWQQGYGPQGM 235
               +     ++   Q   SQWG  S+V  N        ANGW   P   + Q +  QG 
Sbjct: 272 CYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGF 331

Query: 236 WV---PAGQAIGGYGPPPAGRGAPPP--PPP 261
            V   P+   +GG+G  P    APPP  PPP
Sbjct: 332 GVDQSPSAAWMGGFGAQPPQGQAPPPVIPPP 362



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 21/163 (12%)

Query: 12  LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
           L+VG L    T+  +   FSQ G    C ++ + T+N    + FV+F +       LA+ 
Sbjct: 11  LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAA- 67

Query: 72  PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRS---DNSKSNKIFVGGIPHNCGETE 128
              ++GR I  K              K  W   P S   D S    +FVG +       +
Sbjct: 68  ---MNGRKILGKEV------------KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTED 112

Query: 129 LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171
           ++  F  FG +++  ++ D    + +G+GF++F ++   + A+
Sbjct: 113 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 155


>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
          Length = 391

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 82/309 (26%), Positives = 122/309 (39%), Gaps = 48/309 (15%)

Query: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED-EQSVDQ 169
           +  K+F+GG+     E  L   F K+G + EV+++ D E  + RGF F+TFE    + D 
Sbjct: 6   RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65

Query: 170 AVNMHFHDIMGKKVEVKRAEPR--DSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQ 227
           A +M+   + GK ++V++A     +S  + P  P  S+   R +     G  G   P  +
Sbjct: 66  ARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSR 125

Query: 228 QGYGPQGMWVPAGQAIGGYGPPPAGRGAPP----PPP----PFTSYIVSTPPGGFPPPQG 279
            G+   G +          GP P  RG PP    PPP    P      S+  GG  P   
Sbjct: 126 GGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSR 185

Query: 280 FPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPP- 338
               YG PP+      P P   D +  P           +   +  P S+   D + PP 
Sbjct: 186 GRDSYGGPPRRE----PLPSRRDVYLSPRDDGYSTKDSYSSRDY--PSSRDTRDYAPPPR 239

Query: 339 ----------TAQPDFP---YGQYAGYGQD---------------LSGFGQGFSDPSQQ- 369
                     +++ D+P   Y    GYG+D                  +G   S P  + 
Sbjct: 240 DYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSAPPTRG 299

Query: 370 -PPSYGGPS 377
            PPSYGG S
Sbjct: 300 PPPSYGGSS 308



 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 18/135 (13%)

Query: 6   ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP---- 61
           AD  GKLF+GGL+  T ++ L + F +YG +V+ ++MKD+ TN+SRGF FV F+ P    
Sbjct: 4   ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63

Query: 62  -------------NCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSD 108
                          +    A++P    GR   P P   RG  P   R   G   G R  
Sbjct: 64  DAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRG-PPRGLRGGRGGSGGTRGP 122

Query: 109 NSKSNKIFVGGIPHN 123
            S+   +  GG   N
Sbjct: 123 PSRGGHMDDGGYSMN 137


>gi|5454064 RNA binding motif protein 14 [Homo sapiens]
          Length = 669

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 111/417 (26%), Positives = 158/417 (37%), Gaps = 75/417 (17%)

Query: 11  KLFVGGLDWS-TTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVL 68
           K+FVG +D + TT E L + F+ YG V+ C +MK         F FV  ++    +  + 
Sbjct: 2   KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ--------FAFVHMRENAGALRAIE 53

Query: 69  ASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETE 128
           A   H L       +P     ++  R RP   W            KIFVG +   C   E
Sbjct: 54  ALHGHEL-------RPGRALVVEMSRPRPLNTW------------KIFVGNVSAACTSQE 94

Query: 129 LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKR 187
           LR  F++ G V E  ++ D        + F+  E E     A+  ++  ++ GK++ V+ 
Sbjct: 95  LRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 146

Query: 188 AEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYG 247
           +    +K Q  G   A Q G +     A   A      +   +  Q  +   G + GG+ 
Sbjct: 147 S----TKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGGFSATFDYQQAF---GNSTGGFD 199

Query: 248 -------PPPAGRGAPP--PPPPFTSYI--VSTPPGGF--PPPQGFPQGYGAPPQFSFGY 294
                  PP  GR   P    PP  SY+  ++  P  +   P       Y A P  S G 
Sbjct: 200 GQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATYRAQPSVSLGAAYRAQPSASLGV 259

Query: 295 GPPPPPPDQFAPPGVPPPPATPGA---APLAFPPPPSQAAPDMSKPPTAQPD----FPYG 347
           G    P    A      P  + GA     LA P   S AA  +     AQP       YG
Sbjct: 260 GYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSAAASSLGPYGGAQPSASALSSYG 319

Query: 348 QYAGYGQDLSGFG-QGFSDPS--QQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQG 401
             A     L+ +G QG S  S   QP SYG  +    G   A  S       +N QG
Sbjct: 320 GQAAAASSLNSYGAQGSSLASYGNQPSSYGAQAASSYGVRAAASS-------YNTQG 369


>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
           preproprotein [Homo sapiens]
          Length = 331

 Score = 83.2 bits (204), Expect = 4e-16
 Identities = 74/220 (33%), Positives = 80/220 (36%), Gaps = 38/220 (17%)

Query: 193 SKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGG--YGPPP 250
           +K Q P  P     G    P   N   G PPP   QG  PQG    + ++  G   GPPP
Sbjct: 45  NKPQGPPPPPGKPQGPP--PQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPP 102

Query: 251 AGRGAPPPPPPFTSYIVSTPPGG-----FPPPQGFPQGYGAPPQFSFGYGPPPPPPDQFA 305
            G   P  PPP        PP G      PPP G PQ  G PPQ      P  PP     
Sbjct: 103 QGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQ--GPPPQGDKSRSPRSPPGKPQG 160

Query: 306 PP--------GVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYAGYGQDLS 357
           PP        G PPPP  P        PPP         PP  +P  P  Q      D S
Sbjct: 161 PPPQGGNQPQGPPPPPGKPQG------PPPQGGKKPQGPPPPGKPQGPPPQ-----GDKS 209

Query: 358 GFGQGFSDPSQQPPSYGG------PSVPG--SGGPPAGGS 389
              Q      Q PP  GG      P  PG   G PP GG+
Sbjct: 210 RSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 249



 Score = 72.4 bits (176), Expect = 7e-13
 Identities = 72/219 (32%), Positives = 86/219 (39%), Gaps = 35/219 (15%)

Query: 190 PRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQ-QGYGPQGMWVPAGQAIGGYGP 248
           P+  KS++P  P     G    P   N   G PPP  + QG  PQG   P G       P
Sbjct: 143 PQGDKSRSPRSPPGKPQGPP--PQGGNQPQGPPPPPGKPQGPPPQGGKKPQG-------P 193

Query: 249 PPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQFAPPG 308
           PP G+   PPP    S    +PPG    PQG P   G  PQ       PPPPP +  P G
Sbjct: 194 PPPGKPQGPPPQGDKSRSSQSPPG---KPQGPPPQGGNQPQ------GPPPPPGK--PQG 242

Query: 309 VPPPPATPGAAPLAFPPP-PSQAAPDMSKPPTAQPDFPYGQYAGYGQDLSGFGQGFSDPS 367
              PP   G  P   PPP   Q  P      +     P G+  G  Q      +G +   
Sbjct: 243 ---PPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQ-----EGNNPQG 294

Query: 368 QQPPSYGGPSVPGSGGPPAGGSGFGRGQNHNVQGFHPYR 406
             PP+ G P  P +  PPAG     +G     QG  P R
Sbjct: 295 PPPPAGGNPQQPQA--PPAGQP---QGPPRPPQGGRPSR 328



 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 58/171 (33%), Positives = 60/171 (35%), Gaps = 32/171 (18%)

Query: 247 GPPPAGRGAPPPPPPFTSYIVSTPPGGF-----PPPQGFPQGYGAPPQFSFGYGPPPPPP 301
           GP P G   P  PPP        PP G      PPP G PQ  G PPQ      P  PP 
Sbjct: 38  GPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ--GPPPQGDKSRSPRSPPG 95

Query: 302 DQFAPP--------GVPPPPATP-------GAAPLAFPPPPSQAAP----DMSKPPTAQP 342
               PP        G PPPP  P       G  P   PPP     P    D S+ P + P
Sbjct: 96  KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPP 155

Query: 343 DFPYGQYAGYGQDLSGFGQGFSDPSQQPPSYG----GPSVPG--SGGPPAG 387
             P G     G    G       P   PP  G    GP  PG   G PP G
Sbjct: 156 GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQG 206



 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 43/130 (33%), Positives = 45/130 (34%), Gaps = 20/130 (15%)

Query: 264 SYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAF 323
           S I   P G  P     PQG   PP       P  PPP     P  PPPP  P       
Sbjct: 30  SLIAGNPQGPSPQGGNKPQGPPPPPG-----KPQGPPPQGGNKPQGPPPPGKPQG----- 79

Query: 324 PPPPSQAAPDMSKPPTAQPDFPYGQYAGYGQDLSGFGQGFSDPSQQPPSYG----GPSVP 379
           PPP      D S+ P + P  P G     G    G       P   PP  G    GP  P
Sbjct: 80  PPPQG----DKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPP 135

Query: 380 G--SGGPPAG 387
           G   G PP G
Sbjct: 136 GKPQGPPPQG 145



 Score = 33.1 bits (74), Expect = 0.46
 Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 16/101 (15%)

Query: 296 PPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQ------- 348
           P  P P     P  PPP   P   P    PPP         PP  +P  P  Q       
Sbjct: 36  PQGPSPQGGNKPQGPPP---PPGKPQG--PPPQGGNKPQGPPPPGKPQGPPPQGDKSRSP 90

Query: 349 YAGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSGGPPAGGS 389
            +  G+      QG + P   PP  G P     G PP GG+
Sbjct: 91  RSPPGKPQGPPPQGGNQPQGPPPPPGKP----QGPPPQGGN 127



 Score = 32.7 bits (73), Expect = 0.61
 Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 193 SKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPPPAG 252
           SKSQ+   P     G        N   G PPP       PQ    PAGQ  G   PP  G
Sbjct: 269 SKSQSARSPPGKPQGPP--QQEGNNPQGPPPPAGGNPQQPQAP--PAGQPQGPPRPPQGG 324

Query: 253 RGAPPP 258
           R + PP
Sbjct: 325 RPSRPP 330


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.139    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,987,190
Number of Sequences: 37866
Number of extensions: 2323288
Number of successful extensions: 44720
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 1521
Number of HSP's that attempted gapping in prelim test: 11791
Number of HSP's gapped (non-prelim): 13419
length of query: 407
length of database: 18,247,518
effective HSP length: 105
effective length of query: 302
effective length of database: 14,271,588
effective search space: 4310019576
effective search space used: 4310019576
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.