Guide to the Human Genome
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Search of human proteins with 25306283

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|25306283 mitochondrial elongation factor G2 isoform 3 [Homo
sapiens]
         (513 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|25306283 mitochondrial elongation factor G2 isoform 3 [Homo s...  1023   0.0  
gi|19923640 mitochondrial elongation factor G2 isoform 1 [Homo s...  1004   0.0  
gi|25306287 mitochondrial elongation factor G2 isoform 2 [Homo s...   882   0.0  
gi|18390331 G elongation factor, mitochondrial 1 [Homo sapiens]       268   1e-71
gi|4503483 eukaryotic translation elongation factor 2 [Homo sapi...    99   7e-21
gi|157426893 GUF1 GTPase homolog [Homo sapiens]                        98   2e-20
gi|94966754 elongation factor Tu GTP binding domain containing 1...    97   5e-20
gi|239756373 PREDICTED: similar to elongation factor Tu GTP bind...    75   2e-13
gi|239750897 PREDICTED: similar to elongation factor Tu GTP bind...    75   2e-13
gi|239745282 PREDICTED: similar to elongation factor Tu GTP bind...    75   2e-13
gi|217272894 elongation factor Tu GTP binding domain containing ...    70   4e-12
gi|217272892 elongation factor Tu GTP binding domain containing ...    70   4e-12
gi|94966752 elongation factor Tu GTP binding domain containing 1...    68   2e-11
gi|4503471 eukaryotic translation elongation factor 1 alpha 1 [H...    61   3e-09
gi|239757543 PREDICTED: similar to eukaryotic translation elonga...    60   4e-09
gi|4503475 eukaryotic translation elongation factor 1 alpha 2 [H...    60   4e-09
gi|223555963 Hsp70 subfamily B suppressor 1-like protein isoform...    52   1e-06
gi|5729864 Hsp70 subfamily B suppressor 1-like protein isoform 1...    52   1e-06
gi|34147630 Tu translation elongation factor, mitochondrial prec...    52   1e-06
gi|53729339 mitochondrial translational initiation factor 2 prec...    49   8e-06
gi|53729337 mitochondrial translational initiation factor 2 prec...    49   8e-06
gi|194018522 G1 to S phase transition 1 isoform 3 [Homo sapiens]       44   3e-04
gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens]       44   3e-04
gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens]       44   3e-04
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa...    44   3e-04
gi|46094014 peptide chain release factor 3 [Homo sapiens]              42   0.001
gi|54607086 eukaryotic elongation factor, selenocysteine-tRNA-sp...    37   0.033
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo...    32   1.8  
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo...    32   1.8  
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]            31   3.1  

>gi|25306283 mitochondrial elongation factor G2 isoform 3 [Homo
           sapiens]
          Length = 513

 Score = 1023 bits (2645), Expect = 0.0
 Identities = 513/513 (100%), Positives = 513/513 (100%)

Query: 1   MLTNLRIFAMSHQTIPSVYINNICCYKIRASLKRLKPHVPLGRNCSSLPGLIGNDIKSLH 60
           MLTNLRIFAMSHQTIPSVYINNICCYKIRASLKRLKPHVPLGRNCSSLPGLIGNDIKSLH
Sbjct: 1   MLTNLRIFAMSHQTIPSVYINNICCYKIRASLKRLKPHVPLGRNCSSLPGLIGNDIKSLH 60

Query: 61  SIINPPIAKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERG 120
           SIINPPIAKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERG
Sbjct: 61  SIINPPIAKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERG 120

Query: 121 ITIQSAAVTFDWKGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVW 180
           ITIQSAAVTFDWKGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVW
Sbjct: 121 ITIQSAAVTFDWKGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVW 180

Query: 181 RQADKHNIPRICFLNKMDKTGASFKYAVESIREKLKAKPLLLQLPIGEAKTFKGVVDVVM 240
           RQADKHNIPRICFLNKMDKTGASFKYAVESIREKLKAKPLLLQLPIGEAKTFKGVVDVVM
Sbjct: 181 RQADKHNIPRICFLNKMDKTGASFKYAVESIREKLKAKPLLLQLPIGEAKTFKGVVDVVM 240

Query: 241 KEKLLWNCNSNDGKDFERKPLLEMNDPELLKETTEARNALIEQVADLDDEFADLVLEEFS 300
           KEKLLWNCNSNDGKDFERKPLLEMNDPELLKETTEARNALIEQVADLDDEFADLVLEEFS
Sbjct: 241 KEKLLWNCNSNDGKDFERKPLLEMNDPELLKETTEARNALIEQVADLDDEFADLVLEEFS 300

Query: 301 ENFDLLPAEKLQTAIHRVTLAQTAVPVLCGSALKNKGIQPLLDAVTMYLPSPEERNYEFL 360
           ENFDLLPAEKLQTAIHRVTLAQTAVPVLCGSALKNKGIQPLLDAVTMYLPSPEERNYEFL
Sbjct: 301 ENFDLLPAEKLQTAIHRVTLAQTAVPVLCGSALKNKGIQPLLDAVTMYLPSPEERNYEFL 360

Query: 361 QWYKDDLCALAFKVLHDKQRGPLVFMRIYSGTIKPQLAIHNINGNCTERISRLLLPFADQ 420
           QWYKDDLCALAFKVLHDKQRGPLVFMRIYSGTIKPQLAIHNINGNCTERISRLLLPFADQ
Sbjct: 361 QWYKDDLCALAFKVLHDKQRGPLVFMRIYSGTIKPQLAIHNINGNCTERISRLLLPFADQ 420

Query: 421 HVEIPSLTAGNIALTVGLKHTATGDTIVSSKSSALAAARRAEREGEKKHRQNNEAERLLL 480
           HVEIPSLTAGNIALTVGLKHTATGDTIVSSKSSALAAARRAEREGEKKHRQNNEAERLLL
Sbjct: 421 HVEIPSLTAGNIALTVGLKHTATGDTIVSSKSSALAAARRAEREGEKKHRQNNEAERLLL 480

Query: 481 AGVEIPEPVFFCTIEPPSLSKQPGINGLSVSTN 513
           AGVEIPEPVFFCTIEPPSLSKQPGINGLSVSTN
Sbjct: 481 AGVEIPEPVFFCTIEPPSLSKQPGINGLSVSTN 513


>gi|19923640 mitochondrial elongation factor G2 isoform 1 [Homo
           sapiens]
          Length = 779

 Score = 1004 bits (2597), Expect = 0.0
 Identities = 503/505 (99%), Positives = 504/505 (99%)

Query: 1   MLTNLRIFAMSHQTIPSVYINNICCYKIRASLKRLKPHVPLGRNCSSLPGLIGNDIKSLH 60
           MLTNLRIFAMSHQTIPSVYINNICCYKIRASLKRLKPHVPLGRNCSSLPGLIGNDIKSLH
Sbjct: 1   MLTNLRIFAMSHQTIPSVYINNICCYKIRASLKRLKPHVPLGRNCSSLPGLIGNDIKSLH 60

Query: 61  SIINPPIAKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERG 120
           SIINPPIAKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERG
Sbjct: 61  SIINPPIAKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERG 120

Query: 121 ITIQSAAVTFDWKGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVW 180
           ITIQSAAVTFDWKGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVW
Sbjct: 121 ITIQSAAVTFDWKGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVW 180

Query: 181 RQADKHNIPRICFLNKMDKTGASFKYAVESIREKLKAKPLLLQLPIGEAKTFKGVVDVVM 240
           RQADKHNIPRICFLNKMDKTGASFKYAVESIREKLKAKPLLLQLPIGEAKTFKGVVDVVM
Sbjct: 181 RQADKHNIPRICFLNKMDKTGASFKYAVESIREKLKAKPLLLQLPIGEAKTFKGVVDVVM 240

Query: 241 KEKLLWNCNSNDGKDFERKPLLEMNDPELLKETTEARNALIEQVADLDDEFADLVLEEFS 300
           KEKLLWNCNSNDGKDFERKPLLEMNDPELLKETTEARNALIEQVADLDDEFADLVLEEFS
Sbjct: 241 KEKLLWNCNSNDGKDFERKPLLEMNDPELLKETTEARNALIEQVADLDDEFADLVLEEFS 300

Query: 301 ENFDLLPAEKLQTAIHRVTLAQTAVPVLCGSALKNKGIQPLLDAVTMYLPSPEERNYEFL 360
           ENFDLLPAEKLQTAIHRVTLAQTAVPVLCGSALKNKGIQPLLDAVTMYLPSPEERNYEFL
Sbjct: 301 ENFDLLPAEKLQTAIHRVTLAQTAVPVLCGSALKNKGIQPLLDAVTMYLPSPEERNYEFL 360

Query: 361 QWYKDDLCALAFKVLHDKQRGPLVFMRIYSGTIKPQLAIHNINGNCTERISRLLLPFADQ 420
           QWYKDDLCALAFKVLHDKQRGPLVFMRIYSGTIKPQLAIHNINGNCTERISRLLLPFADQ
Sbjct: 361 QWYKDDLCALAFKVLHDKQRGPLVFMRIYSGTIKPQLAIHNINGNCTERISRLLLPFADQ 420

Query: 421 HVEIPSLTAGNIALTVGLKHTATGDTIVSSKSSALAAARRAEREGEKKHRQNNEAERLLL 480
           HVEIPSLTAGNIALTVGLKHTATGDTIVSSKSSALAAARRAEREGEKKHRQNNEAERLLL
Sbjct: 421 HVEIPSLTAGNIALTVGLKHTATGDTIVSSKSSALAAARRAEREGEKKHRQNNEAERLLL 480

Query: 481 AGVEIPEPVFFCTIEPPSLSKQPGI 505
           AGVEIPEPVFFCTIEPPSLSKQP +
Sbjct: 481 AGVEIPEPVFFCTIEPPSLSKQPDL 505


>gi|25306287 mitochondrial elongation factor G2 isoform 2 [Homo
           sapiens]
          Length = 732

 Score =  882 bits (2280), Expect = 0.0
 Identities = 456/505 (90%), Positives = 457/505 (90%), Gaps = 47/505 (9%)

Query: 1   MLTNLRIFAMSHQTIPSVYINNICCYKIRASLKRLKPHVPLGRNCSSLPGLIGNDIKSLH 60
           MLTNLRIFAMSHQTIPSVYINNICCYKIRASLKRLKPHVPLGRNCSSLPGLIGNDIKSLH
Sbjct: 1   MLTNLRIFAMSHQTIPSVYINNICCYKIRASLKRLKPHVPLGRNCSSLPGLIGNDIKSLH 60

Query: 61  SIINPPIAKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERG 120
           SIINPPIAKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERG
Sbjct: 61  SIINPPIAKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERG 120

Query: 121 ITIQSAAVTFDWKGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVW 180
           ITIQSAAVTFDWKGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVW
Sbjct: 121 ITIQSAAVTFDWKGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVW 180

Query: 181 RQADKHNIPRICFLNKMDKTGASFKYAVESIREKLKAKPLLLQLPIGEAKTFKGVVDVVM 240
           RQADKHNIPRICFLNKMDKTGASFKYAVESIREKLKAKPLLLQLPIGEAKTFKGVVDVVM
Sbjct: 181 RQADKHNIPRICFLNKMDKTGASFKYAVESIREKLKAKPLLLQLPIGEAKTFKGVVDVVM 240

Query: 241 KEKLLWNCNSNDGKDFERKPLLEMNDPELLKETTEARNALIEQVADLDDEFADLVLEEFS 300
           KEKLLWNCNSNDGKDFERKPLLEMNDPELLKETTEARNALIEQVADLDDEFADLVLEEFS
Sbjct: 241 KEKLLWNCNSNDGKDFERKPLLEMNDPELLKETTEARNALIEQVADLDDEFADLVLEEFS 300

Query: 301 ENFDLLPAEKLQTAIHRVTLAQTAVPVLCGSALKNKGIQPLLDAVTMYLPSPEERNYEFL 360
           ENFDLLPAEKLQTAIHRVTLAQTAVPVLCGSALKNKGIQPLLDAVTMYLPSPEERNYEFL
Sbjct: 301 ENFDLLPAEKLQTAIHRVTLAQTAVPVLCGSALKNKGIQPLLDAVTMYLPSPEERNYEFL 360

Query: 361 QWYKDDLCALAFKVLHDKQRGPLVFMRIYSGTIKPQLAIHNINGNCTERISRLLLPFADQ 420
                                                          ERISRLLLPFADQ
Sbjct: 361 -----------------------------------------------ERISRLLLPFADQ 373

Query: 421 HVEIPSLTAGNIALTVGLKHTATGDTIVSSKSSALAAARRAEREGEKKHRQNNEAERLLL 480
           HVEIPSLTAGNIALTVGLKHTATGDTIVSSKSSALAAARRAEREGEKKHRQNNEAERLLL
Sbjct: 374 HVEIPSLTAGNIALTVGLKHTATGDTIVSSKSSALAAARRAEREGEKKHRQNNEAERLLL 433

Query: 481 AGVEIPEPVFFCTIEPPSLSKQPGI 505
           AGVEIPEPVFFCTIEPPSLSKQP +
Sbjct: 434 AGVEIPEPVFFCTIEPPSLSKQPDL 458


>gi|18390331 G elongation factor, mitochondrial 1 [Homo sapiens]
          Length = 751

 Score =  268 bits (684), Expect = 1e-71
 Identities = 170/412 (41%), Positives = 230/412 (55%), Gaps = 34/412 (8%)

Query: 66  PIAKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGD---TVTDFMAQERERGIT 122
           P  KIRNIGI AHID+GKTT TER+LYY+G    + +V   D    V D M  ER+RGIT
Sbjct: 42  PNEKIRNIGISAHIDSGKTTLTERVLYYTGRIAKMHEVKGKDGVGAVMDSMELERQRGIT 101

Query: 123 IQSAAVTFDWKGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ 182
           IQSAA    WK   +N+IDTPGHVDFT+EVER LRVLDGAV V  A  GV+ QT+TV RQ
Sbjct: 102 IQSAATYTMWKDVNINIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGGVQCQTMTVNRQ 161

Query: 183 ADKHNIPRICFLNKMDKTGASFKYAVESIREKLKAKPLLLQLPIGEAKTFKGVVDVVMKE 242
             ++N+P + F+NK+D+ G++   A++ +R KL      +Q+P+G    FKG+VD++ + 
Sbjct: 162 MKRYNVPFLTFINKLDRMGSNPARALQQMRSKLNHNAAFMQIPMGLEGNFKGIVDLIEER 221

Query: 243 KLLWNCNSNDGKDFERKPLLEMNDPELLKETTEARNALIEQVADLDDEFADLVLEEFSEN 302
            + +     DG DF +         EL    T+ R  LIE VA+ D++  ++ LEE    
Sbjct: 222 AIYF-----DG-DFGQIVRYGEIPAELRAAATDHRQELIECVANSDEQLGEMFLEE---- 271

Query: 303 FDLLPAEKLQTAIHRVTLAQTAVPVLCGSALKNKGIQPLLDAVTMYLPSPEE-RNYEFLQ 361
             +     L+ AI R TL ++  PV  GSALKNKG+QPLLDAV  YLP+P E +NY  L 
Sbjct: 272 -KIPSISDLKLAIRRATLKRSFTPVFLGSALKNKGVQPLLDAVLEYLPNPSEVQNYAILN 330

Query: 362 WYKDD-----------------LCALAFKVLHDKQRGPLVFMRIYSGTIKPQLAIHNING 404
              D                     LAFK L   + G L ++R Y G +K    I+N   
Sbjct: 331 KEDDSKEKTKILMNSSRDNSHPFVGLAFK-LEVGRFGQLTYVRSYQGELKKGDTIYNTRT 389

Query: 405 NCTERISRLLLPFADQHVEIPSLTAGNIALTVGLKHTATGDTIVSSKSSALA 456
               R+ RL    AD   ++  + AG+I    G+   A+GDT     +S L+
Sbjct: 390 RKKVRLQRLARMHADMMEDVEEVYAGDICALFGI-DCASGDTFTDKANSGLS 440


>gi|4503483 eukaryotic translation elongation factor 2 [Homo
           sapiens]
          Length = 858

 Score = 99.4 bits (246), Expect = 7e-21
 Identities = 61/149 (40%), Positives = 84/149 (56%), Gaps = 20/149 (13%)

Query: 68  AKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDT-VTDFMAQERERGITIQSA 126
           A IRN+ ++AH+D GK+T T+ ++  +G   S      G+T  TD    E+ER ITI+S 
Sbjct: 17  ANIRNMSVIAHVDHGKSTLTDSLVCKAGIIAS---ARAGETRFTDTRKDEQERCITIKST 73

Query: 127 AVTF----------------DWKGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASA 170
           A++                 D  G+ +NLID+PGHVDF+ EV   LRV DGA+ V D  +
Sbjct: 74  AISLFYELSENDLNFIKQSKDGAGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS 133

Query: 171 GVEAQTLTVWRQADKHNIPRICFLNKMDK 199
           GV  QT TV RQA    I  +  +NKMD+
Sbjct: 134 GVCVQTETVLRQAIAERIKPVLMMNKMDR 162


>gi|157426893 GUF1 GTPase homolog [Homo sapiens]
          Length = 669

 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 56/141 (39%), Positives = 86/141 (60%), Gaps = 7/141 (4%)

Query: 66  PIAKIRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITI-- 123
           P+  IRN  I+AH+D GK+T  +R+L  +G   ++    +   V D +  ERERGIT+  
Sbjct: 64  PVENIRNFSIVAHVDHGKSTLADRLLELTG---TIDKTKNNKQVLDKLQVERERGITVKA 120

Query: 124 QSAAVTFDWKG--YRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWR 181
           Q+A++ ++ +G  Y +NLIDTPGHVDF+ EV R L    G + V DA+ G++AQT+  + 
Sbjct: 121 QTASLFYNCEGKQYLLNLIDTPGHVDFSYEVSRSLSACQGVLLVVDANEGIQAQTVANFF 180

Query: 182 QADKHNIPRICFLNKMDKTGA 202
            A +  +  I  +NK+D   A
Sbjct: 181 LAFEAQLSVIPVINKIDLKNA 201


>gi|94966754 elongation factor Tu GTP binding domain containing 1
           isoform 1 [Homo sapiens]
          Length = 1120

 Score = 96.7 bits (239), Expect = 5e-20
 Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 10/155 (6%)

Query: 68  AKIRNIGIMAHIDAGKTTTTERILYYSGY--TRSLGDVDDGDTVTDFMAQERERGITIQS 125
           A IRNI ++AH+D GKTT  + ++  +G   +R  G +   D+  D    E+ RGIT++S
Sbjct: 17  ANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSRED----EQIRGITMKS 72

Query: 126 AAVTFDW----KGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWR 181
           +A++  +    + Y +NLID+PGHVDF+ EV   +R+ DG + V DA  GV  QT  V R
Sbjct: 73  SAISLHYATGNEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLR 132

Query: 182 QADKHNIPRICFLNKMDKTGASFKYAVESIREKLK 216
           QA   NI  +  +NK+D+     K+  +     LK
Sbjct: 133 QAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLK 167


>gi|239756373 PREDICTED: similar to elongation factor Tu GTP binding
           domain containing 1 [Homo sapiens]
          Length = 263

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 10/111 (9%)

Query: 68  AKIRNIGIMAHIDAGKTTTTERILYYSGYTRS--LGDVDDGDTVTDFMAQERERGITIQS 125
           A IRNI ++AH+D GKTT  + ++  +G   S   G +   D+  D    E+ RGIT++S
Sbjct: 148 ANIRNICVLAHVDRGKTTLADCLISSNGIISSHLAGKLRYMDSRED----EQIRGITMKS 203

Query: 126 AAVTFDW----KGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGV 172
           +A++  +    + Y +NLID+PGH+DF+ +V   +R+ DG + V DA  GV
Sbjct: 204 SAISLHYATGNEEYLINLIDSPGHMDFSSDVSTAVRICDGCIIVVDAVEGV 254


>gi|239750897 PREDICTED: similar to elongation factor Tu GTP binding
           domain containing 1 [Homo sapiens]
          Length = 263

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 10/111 (9%)

Query: 68  AKIRNIGIMAHIDAGKTTTTERILYYSGYTRS--LGDVDDGDTVTDFMAQERERGITIQS 125
           A IRNI ++AH+D GKTT  + ++  +G   S   G +   D+  D    E+ RGIT++S
Sbjct: 148 ANIRNICVLAHVDRGKTTLADCLISSNGIISSHLAGKLRYMDSRED----EQIRGITMKS 203

Query: 126 AAVTFDW----KGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGV 172
           +A++  +    + Y +NLID+PGH+DF+ +V   +R+ DG + V DA  GV
Sbjct: 204 SAISLHYATGNEEYLINLIDSPGHMDFSSDVSTAVRICDGCIIVVDAVEGV 254


>gi|239745282 PREDICTED: similar to elongation factor Tu GTP binding
           domain containing 1 [Homo sapiens]
          Length = 263

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 10/111 (9%)

Query: 68  AKIRNIGIMAHIDAGKTTTTERILYYSGYTRS--LGDVDDGDTVTDFMAQERERGITIQS 125
           A IRNI ++AH+D GKTT  + ++  +G   S   G +   D+  D    E+ RGIT++S
Sbjct: 148 ANIRNICVLAHVDRGKTTLADCLISSNGIISSHLAGKLRYMDSRED----EQIRGITMKS 203

Query: 126 AAVTFDW----KGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGV 172
           +A++  +    + Y +NLID+PGH+DF+ +V   +R+ DG + V DA  GV
Sbjct: 204 SAISLHYATGNEEYLINLIDSPGHMDFSSDVSTAVRICDGCIIVVDAVEGV 254


>gi|217272894 elongation factor Tu GTP binding domain containing 2
           isoform b [Homo sapiens]
          Length = 937

 Score = 70.5 bits (171), Expect = 4e-12
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 6/135 (4%)

Query: 70  IRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAVT 129
           IRN+ +  H+  GKT   + ++  + +       D     TD +  E+ERG+ I+S  VT
Sbjct: 94  IRNVTLCGHLHHGKTCFVDCLIEQT-HPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVT 152

Query: 130 F---DWKG--YRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD 184
               D KG  Y  N++DTPGHV+F+ EV   LR+ DG V   DA+ GV   T  + + A 
Sbjct: 153 VVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAV 212

Query: 185 KHNIPRICFLNKMDK 199
           +  +     +NK+D+
Sbjct: 213 QERLAVTVCINKIDR 227


>gi|217272892 elongation factor Tu GTP binding domain containing 2
           isoform a [Homo sapiens]
          Length = 972

 Score = 70.5 bits (171), Expect = 4e-12
 Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 6/135 (4%)

Query: 70  IRNIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAVT 129
           IRN+ +  H+  GKT   + ++  + +       D     TD +  E+ERG+ I+S  VT
Sbjct: 129 IRNVTLCGHLHHGKTCFVDCLIEQT-HPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVT 187

Query: 130 F---DWKG--YRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD 184
               D KG  Y  N++DTPGHV+F+ EV   LR+ DG V   DA+ GV   T  + + A 
Sbjct: 188 VVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAV 247

Query: 185 KHNIPRICFLNKMDK 199
           +  +     +NK+D+
Sbjct: 248 QERLAVTVCINKIDR 262


>gi|94966752 elongation factor Tu GTP binding domain containing 1
           isoform 2 [Homo sapiens]
          Length = 1069

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 35/82 (42%), Positives = 47/82 (57%)

Query: 135 YRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKHNIPRICFL 194
           Y +NLID+PGHVDF+ EV   +R+ DG + V DA  GV  QT  V RQA   NI  +  +
Sbjct: 35  YLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVI 94

Query: 195 NKMDKTGASFKYAVESIREKLK 216
           NK+D+     K+  +     LK
Sbjct: 95  NKIDRLIVELKFTPQEAYSHLK 116


>gi|4503471 eukaryotic translation elongation factor 1 alpha 1 [Homo
           sapiens]
          Length = 462

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 21/150 (14%)

Query: 72  NIGIMAHIDAGKTTTTERILYYSG---------YTRSLGDVDDGDT----VTDFMAQERE 118
           NI ++ H+D+GK+TTT  ++Y  G         + +   ++  G      V D +  ERE
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERE 68

Query: 119 RGITIQSAAVTFDWKGYRVNLIDTPGHVDF-------TLEVERCLRVLDGAVAVFDASAG 171
           RGITI  +   F+   Y V +ID PGH DF       T + +  + ++   V  F+A   
Sbjct: 69  RGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGIS 128

Query: 172 VEAQTLTVWRQADKHNIPR-ICFLNKMDKT 200
              QT      A    + + I  +NKMD T
Sbjct: 129 KNGQTREHALLAYTLGVKQLIVGVNKMDST 158


>gi|239757543 PREDICTED: similar to eukaryotic translation
           elongation factor 1 alpha 2 [Homo sapiens]
          Length = 444

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 21/154 (13%)

Query: 72  NIGIMAHIDAGKTTTTERILYYSG---------YTRSLGDVDDGDT----VTDFMAQERE 118
           NI ++ H+D+GK+TTT  ++Y  G         + +   ++  G      V D +  ERE
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERE 68

Query: 119 RGITIQSAAVTFDWKGYRVNLIDTPGHVDF-------TLEVERCLRVLDGAVAVFDASAG 171
           RGITI  +   F+   Y + +ID PGH DF       T + +  + ++   V  F+A   
Sbjct: 69  RGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGIS 128

Query: 172 VEAQTLTVWRQADKHNIPR-ICFLNKMDKTGASF 204
              QT      A    + + I  +NKMD T  ++
Sbjct: 129 KNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAY 162


>gi|4503475 eukaryotic translation elongation factor 1 alpha 2 [Homo
           sapiens]
          Length = 463

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 21/154 (13%)

Query: 72  NIGIMAHIDAGKTTTTERILYYSG---------YTRSLGDVDDGDT----VTDFMAQERE 118
           NI ++ H+D+GK+TTT  ++Y  G         + +   ++  G      V D +  ERE
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERE 68

Query: 119 RGITIQSAAVTFDWKGYRVNLIDTPGHVDF-------TLEVERCLRVLDGAVAVFDASAG 171
           RGITI  +   F+   Y + +ID PGH DF       T + +  + ++   V  F+A   
Sbjct: 69  RGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGIS 128

Query: 172 VEAQTLTVWRQADKHNIPR-ICFLNKMDKTGASF 204
              QT      A    + + I  +NKMD T  ++
Sbjct: 129 KNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAY 162


>gi|223555963 Hsp70 subfamily B suppressor 1-like protein isoform 2
           [Homo sapiens]
          Length = 642

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 13/116 (11%)

Query: 69  KIRNIGIMAHIDAGKTTTTERILY------------YSGYTRSLGDVDDGDT-VTDFMAQ 115
           ++ N+ ++ H+DAGK+T    +LY            Y   ++  G        V D   +
Sbjct: 217 QLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETGE 276

Query: 116 ERERGITIQSAAVTFDWKGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAG 171
           ERERG+T+      F+     + L+D PGH DF   +       D AV V DAS G
Sbjct: 277 ERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRG 332


>gi|5729864 Hsp70 subfamily B suppressor 1-like protein isoform 1
           [Homo sapiens]
          Length = 684

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 13/116 (11%)

Query: 69  KIRNIGIMAHIDAGKTTTTERILY------------YSGYTRSLGDVDDGDT-VTDFMAQ 115
           ++ N+ ++ H+DAGK+T    +LY            Y   ++  G        V D   +
Sbjct: 259 QLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETGE 318

Query: 116 ERERGITIQSAAVTFDWKGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAG 171
           ERERG+T+      F+     + L+D PGH DF   +       D AV V DAS G
Sbjct: 319 ERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRG 374


>gi|34147630 Tu translation elongation factor, mitochondrial
           precursor [Homo sapiens]
          Length = 455

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 11/132 (8%)

Query: 72  NIGIMAHIDAGKTTTTERI--LYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAVT 129
           N+G + H+D GKTT T  I  +   G        ++ D   +    ER RGITI +A V 
Sbjct: 62  NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPE----ERARGITINAAHVE 117

Query: 130 FDWKGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQT---LTVWRQADKH 186
           +          D PGH D+   +      LDG + V  A+ G   QT   L + RQ    
Sbjct: 118 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVE 177

Query: 187 NIPRICFLNKMD 198
           ++  + ++NK D
Sbjct: 178 HV--VVYVNKAD 187


>gi|53729339 mitochondrial translational initiation factor 2
           precursor [Homo sapiens]
          Length = 727

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 60/232 (25%), Positives = 89/232 (38%), Gaps = 52/232 (22%)

Query: 73  IGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAVTFDW 132
           + IM H+D GKTT  ++          +  V+ G             GIT    A     
Sbjct: 183 VTIMGHVDHGKTTLLDKFR-----KTQVAAVETG-------------GITQHIGAFLVSL 224

Query: 133 -KGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKHNIPRI 191
             G ++  +DTPGH  F+    R  +V D  V V  A  GV  QT+   + A    +P I
Sbjct: 225 PSGEKITFLDTPGHAAFSAMRARGAQVTDIVVLVVAADDGVMKQTVESIQHAKDAQVPII 284

Query: 192 CFLNKMDKTGASFKYAVESIREKLKAKPLLLQLPIGEAKTFKGVVDVVMKEKLLWNCNSN 251
             +NK DK         E+  EK+K + L                DVV ++         
Sbjct: 285 LAVNKCDK--------AEADPEKVKKELL--------------AYDVVCEDY-------- 314

Query: 252 DGKDFERKPLLEMNDPEL--LKETTEARNALIEQVADLDDEFADLVLEEFSE 301
            G D +  P+  +    L  L E T A   ++E  AD +      V+E F++
Sbjct: 315 -GGDVQAVPVSALTGDNLMALAEATVALAEMLELKADPNGPVEGTVIESFTD 365


>gi|53729337 mitochondrial translational initiation factor 2
           precursor [Homo sapiens]
          Length = 727

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 60/232 (25%), Positives = 89/232 (38%), Gaps = 52/232 (22%)

Query: 73  IGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAVTFDW 132
           + IM H+D GKTT  ++          +  V+ G             GIT    A     
Sbjct: 183 VTIMGHVDHGKTTLLDKFR-----KTQVAAVETG-------------GITQHIGAFLVSL 224

Query: 133 -KGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKHNIPRI 191
             G ++  +DTPGH  F+    R  +V D  V V  A  GV  QT+   + A    +P I
Sbjct: 225 PSGEKITFLDTPGHAAFSAMRARGAQVTDIVVLVVAADDGVMKQTVESIQHAKDAQVPII 284

Query: 192 CFLNKMDKTGASFKYAVESIREKLKAKPLLLQLPIGEAKTFKGVVDVVMKEKLLWNCNSN 251
             +NK DK         E+  EK+K + L                DVV ++         
Sbjct: 285 LAVNKCDK--------AEADPEKVKKELL--------------AYDVVCEDY-------- 314

Query: 252 DGKDFERKPLLEMNDPEL--LKETTEARNALIEQVADLDDEFADLVLEEFSE 301
            G D +  P+  +    L  L E T A   ++E  AD +      V+E F++
Sbjct: 315 -GGDVQAVPVSALTGDNLMALAEATVALAEMLELKADPNGPVEGTVIESFTD 365


>gi|194018522 G1 to S phase transition 1 isoform 3 [Homo sapiens]
          Length = 499

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 25/186 (13%)

Query: 55  DIKSLHSIINPPIAKIR---NIGIMAHIDAGKTTTTERILYYSG---------YTRSLGD 102
           +I    S++ PP A  +   N+  + H+DAGK+T   +I+Y +G         Y R   +
Sbjct: 56  EIPKPKSVVAPPGAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKE 115

Query: 103 VDDG----DTVTDFMAQERERGITIQSAAVTFDWKGYRVNLIDTPGHVDFTLEVERCLRV 158
            +          D   +ER++G T++     F+ +     ++D PGH  F   +      
Sbjct: 116 KNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQ 175

Query: 159 LDGAVAVFDASAGVEAQTLTVWRQADKHNI--------PRICFLNKMDKTGASF-KYAVE 209
            D AV V  A  G          Q  +H +          I  +NKMD    ++     E
Sbjct: 176 ADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYE 235

Query: 210 SIREKL 215
             +EKL
Sbjct: 236 ECKEKL 241


>gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens]
          Length = 636

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 25/186 (13%)

Query: 55  DIKSLHSIINPPIAKIR---NIGIMAHIDAGKTTTTERILYYSG---------YTRSLGD 102
           +I    S++ PP A  +   N+  + H+DAGK+T   +I+Y +G         Y R   +
Sbjct: 193 EIPKPKSVVAPPGAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKE 252

Query: 103 VDDG----DTVTDFMAQERERGITIQSAAVTFDWKGYRVNLIDTPGHVDFTLEVERCLRV 158
            +          D   +ER++G T++     F+ +     ++D PGH  F   +      
Sbjct: 253 KNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQ 312

Query: 159 LDGAVAVFDASAGVEAQTLTVWRQADKHNI--------PRICFLNKMDKTGASF-KYAVE 209
            D AV V  A  G          Q  +H +          I  +NKMD    ++     E
Sbjct: 313 ADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYE 372

Query: 210 SIREKL 215
             +EKL
Sbjct: 373 ECKEKL 378


>gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens]
          Length = 637

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 25/186 (13%)

Query: 55  DIKSLHSIINPPIAKIR---NIGIMAHIDAGKTTTTERILYYSG---------YTRSLGD 102
           +I    S++ PP A  +   N+  + H+DAGK+T   +I+Y +G         Y R   +
Sbjct: 194 EIPKPKSVVAPPGAPKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKE 253

Query: 103 VDDG----DTVTDFMAQERERGITIQSAAVTFDWKGYRVNLIDTPGHVDFTLEVERCLRV 158
            +          D   +ER++G T++     F+ +     ++D PGH  F   +      
Sbjct: 254 KNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQ 313

Query: 159 LDGAVAVFDASAGVEAQTLTVWRQADKHNI--------PRICFLNKMDKTGASF-KYAVE 209
            D AV V  A  G          Q  +H +          I  +NKMD    ++     E
Sbjct: 314 ADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYE 373

Query: 210 SIREKL 215
             +EKL
Sbjct: 374 ECKEKL 379


>gi|84043963 eukaryotic translation initiation factor 5B [Homo
           sapiens]
          Length = 1220

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 8/131 (6%)

Query: 73  IGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITIQSAAV-TFD 131
           I ++ H+D GKT   +++ +        G +      T+   +     I  Q+  +  FD
Sbjct: 634 ICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLE----AINEQTKMIKNFD 689

Query: 132 WKGYRVN---LIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKHNI 188
            +  R+    +IDTPGH  F+    R   + D A+ V D   G+E QT+           
Sbjct: 690 RENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINLLKSKKC 749

Query: 189 PRICFLNKMDK 199
           P I  LNK+D+
Sbjct: 750 PFIVALNKIDR 760


>gi|46094014 peptide chain release factor 3 [Homo sapiens]
          Length = 628

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 44/186 (23%), Positives = 74/186 (39%), Gaps = 25/186 (13%)

Query: 55  DIKSLHSIINP---PIAKIRNIGIMAHIDAGKTTTTERILYYSG---------YTRSLGD 102
           +I+   S+I P   P  +  N+  + H+DAGK+T   +I++ +G         Y R   +
Sbjct: 185 EIRKSKSVIVPSGAPKKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDKRTLEKYEREAKE 244

Query: 103 VDDG----DTVTDFMAQERERGITIQSAAVTFDWKGYRVNLIDTPGHVDFTLEVERCLRV 158
            +          D   +ER++G T++     F+ +     ++D PGH  F   +      
Sbjct: 245 KNRETWYLSWALDTNQEERDKGKTVEVGRAYFETERKHFTILDAPGHKSFVPNMIGGASQ 304

Query: 159 LDGAVAVFDASAGVEAQTLTVWRQADKHNI--------PRICFLNKMDKTGASFKY-AVE 209
            D AV V  A  G          Q  +H +          I  +NKMD    ++     E
Sbjct: 305 ADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSIERYE 364

Query: 210 SIREKL 215
             +EKL
Sbjct: 365 ECKEKL 370


>gi|54607086 eukaryotic elongation factor,
           selenocysteine-tRNA-specific [Homo sapiens]
          Length = 596

 Score = 37.4 bits (85), Expect = 0.033
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 36/130 (27%)

Query: 72  NIGIMAHIDAGKTTTTERILYYSGYTRSLGDVDDGDTVTDFMAQERERGITI-------- 123
           N+G++ HID+GKT    R L  +  T +           D   Q RERGIT+        
Sbjct: 9   NVGVLGHIDSGKTALA-RALSTTASTAAF----------DKQPQSRERGITLDLGFSCFS 57

Query: 124 --------------QSAAVTFDWKG---YRVNLIDTPGHVDFTLEVERCLRVLDGAVAVF 166
                         Q+A       G    +V L+D PGH      +    +++D  + V 
Sbjct: 58  VPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVI 117

Query: 167 DASAGVEAQT 176
           D + G++ Q+
Sbjct: 118 DVTKGMQTQS 127


>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
           sapiens]
          Length = 1077

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 242 EKLLWNCNSNDGKDFERKPLLEMNDPELLKETTEARNALIEQVADLDDEFADLVLEEFSE 301
           EK+  N +S   K+ ER+  +E +  E  +E  +AR+   EQ  ++D E      EE  +
Sbjct: 824 EKIAKNLDSEKEKELERQARIEASLREREREVQKARS---EQTKEIDREREQHKREEAIQ 880

Query: 302 NFDLLPAEKLQTA 314
           NF  L ++ ++++
Sbjct: 881 NFKALLSDMVRSS 893


>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
           sapiens]
          Length = 1098

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 242 EKLLWNCNSNDGKDFERKPLLEMNDPELLKETTEARNALIEQVADLDDEFADLVLEEFSE 301
           EK+  N +S   K+ ER+  +E +  E  +E  +AR+   EQ  ++D E      EE  +
Sbjct: 845 EKIAKNLDSEKEKELERQARIEASLREREREVQKARS---EQTKEIDREREQHKREEAIQ 901

Query: 302 NFDLLPAEKLQTA 314
           NF  L ++ ++++
Sbjct: 902 NFKALLSDMVRSS 914


>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
          Length = 212

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 120 GITIQSAAVTFDWKGYRVNLIDTPGHVDFTLEVERCLRVLDGAVAVFDASAGVEAQTLTV 179
           G+   +  +T D K  ++ + DT G   F        R   GA+ V+D +       LT 
Sbjct: 40  GVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTT 99

Query: 180 W----RQADKHNIPRICFLNKMD 198
           W    RQ    N+  +   NK D
Sbjct: 100 WLEDARQHSNSNMVIMLIGNKSD 122


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,720,625
Number of Sequences: 37866
Number of extensions: 806225
Number of successful extensions: 2103
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2045
Number of HSP's gapped (non-prelim): 38
length of query: 513
length of database: 18,247,518
effective HSP length: 107
effective length of query: 406
effective length of database: 14,195,856
effective search space: 5763517536
effective search space used: 5763517536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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