Guide to the Human Genome
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Name: GFM2 Sequence: fasta or formatted (779aa) NCBI GI: 19923640
Description:

mitochondrial elongation factor G2 isoform 1

Referenced in:

Translation Factors

Other entries for this name:
alt prot [513aa] mitochondrial elongation factor G2 isoform 3
alt prot [732aa] mitochondrial elongation factor G2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         60           3
 C cysteine            1.9         15           2
 D aspartate           5.5         43           2
 E glutamate           7.1         55           2
 F phenylalanine       2.7         21           2
 G glycine             5.5         43           1
 H histidine           2.4         19           1
 I isoleucine          6.8         53           2
 K lysine              5.5         43           2
 L leucine            11.9         93           3
 M methionine          1.9         15           1
 N asparagine          4.2         33           2
 P proline             4.9         38           2
 Q glutamine           4.0         31           1
 R arginine            5.8         45           2
 S serine              5.8         45           2
 T threonine           6.8         53           4
 V valine              6.7         52           2
 W tryptophan          0.5          4           1
 Y tyrosine            2.3         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mitochondrial elongation factor G2 isoform 1 
GFM2                  0.919   mitochondrial elongation factor G2 isoform 2 
GFM2                  0.647   mitochondrial elongation factor G2 isoform 3 
GFM1                  0.236   G elongation factor, mitochondrial 1 
EEF2                  0.073   eukaryotic translation elongation factor 2 
GUF1                  0.048   GUF1 GTPase homolog 
EFTUD1                0.048   elongation factor Tu GTP binding domain containing 1...
LOC727963             0.033   PREDICTED: similar to elongation factor Tu GTP bind...
LOC727963             0.033   PREDICTED: similar to elongation factor Tu GTP bind...
LOC727963             0.033   PREDICTED: similar to elongation factor Tu GTP bind...
EFTUD2                0.030   elongation factor Tu GTP binding domain containing ...
EFTUD2                0.030   elongation factor Tu GTP binding domain containing ...
EFTUD1                0.028   elongation factor Tu GTP binding domain containing 1...
EEF1A1                0.024   eukaryotic translation elongation factor 1 alpha 1 [H...
LOC100293909          0.023   PREDICTED: similar to eukaryotic translation elonga...
EEF1A2                0.023   eukaryotic translation elongation factor 1 alpha 2 [H...
HBS1L                 0.018   Hsp70 subfamily B suppressor 1-like protein isoform...
HBS1L                 0.018   Hsp70 subfamily B suppressor 1-like protein isoform 1...
TUFM                  0.018   Tu translation elongation factor, mitochondrial prec...
MTIF2                 0.016   mitochondrial translational initiation factor 2 prec...
MTIF2                 0.016   mitochondrial translational initiation factor 2 prec...
GSPT1                 0.013   G1 to S phase transition 1 isoform 3 
GSPT1                 0.013   G1 to S phase transition 1 isoform 2 
GSPT1                 0.013   G1 to S phase transition 1 isoform 1 
EIF5B                 0.013   eukaryotic translation initiation factor 5B 
GSPT2                 0.011   peptide chain release factor 3 
EEFSEC                0.008   eukaryotic elongation factor, selenocysteine-tRNA-sp...
TCERG1                0.005   transcription elongation regulator 1 isoform 2 [Homo...
TCERG1                0.005   transcription elongation regulator 1 isoform 1 [Homo...
RAB2A                 0.004   RAB2A, member RAS oncogene family 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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