Guide to the Human Genome
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Name: GFM1 Sequence: fasta or formatted (751aa) NCBI GI: 18390331
Description:

G elongation factor, mitochondrial 1

Referenced in:

Translation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         57           3
 C cysteine            1.6         12           1
 D aspartate           5.5         41           2
 E glutamate           7.3         55           2
 F phenylalanine       4.1         31           1
 G glycine             8.5         64           2
 H histidine           1.9         14           2
 I isoleucine          6.1         46           2
 K lysine              6.7         50           2
 L leucine             8.3         62           2
 M methionine          3.1         23           2
 N asparagine          4.3         32           1
 P proline             4.3         32           1
 Q glutamine           4.0         30           2
 R arginine            5.7         43           2
 S serine              5.3         40           3
 T threonine           5.3         40           2
 V valine              6.8         51           2
 W tryptophan          0.5          4           1
 Y tyrosine            3.2         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   G elongation factor, mitochondrial 1 
GFM2                  0.241   mitochondrial elongation factor G2 isoform 1 
GFM2                  0.221   mitochondrial elongation factor G2 isoform 2 
GFM2                  0.164   mitochondrial elongation factor G2 isoform 3 
GUF1                  0.053   GUF1 GTPase homolog 
EEF2                  0.052   eukaryotic translation elongation factor 2 
EFTUD1                0.046   elongation factor Tu GTP binding domain containing 1...
LOC727963             0.034   PREDICTED: similar to elongation factor Tu GTP bind...
LOC727963             0.034   PREDICTED: similar to elongation factor Tu GTP bind...
LOC727963             0.034   PREDICTED: similar to elongation factor Tu GTP bind...
EFTUD2                0.029   elongation factor Tu GTP binding domain containing ...
EFTUD2                0.029   elongation factor Tu GTP binding domain containing ...
EFTUD1                0.026   elongation factor Tu GTP binding domain containing 1...
HBS1L                 0.022   Hsp70 subfamily B suppressor 1-like protein isoform...
HBS1L                 0.022   Hsp70 subfamily B suppressor 1-like protein isoform 1...
LOC100293909          0.022   PREDICTED: similar to eukaryotic translation elonga...
EEF1A2                0.022   eukaryotic translation elongation factor 1 alpha 2 [H...
EEF1A1                0.022   eukaryotic translation elongation factor 1 alpha 1 [H...
MTIF2                 0.019   mitochondrial translational initiation factor 2 prec...
MTIF2                 0.019   mitochondrial translational initiation factor 2 prec...
TUFM                  0.018   Tu translation elongation factor, mitochondrial prec...
GSPT1                 0.018   G1 to S phase transition 1 isoform 3 
GSPT1                 0.018   G1 to S phase transition 1 isoform 2 
GSPT1                 0.018   G1 to S phase transition 1 isoform 1 
EIF5B                 0.017   eukaryotic translation initiation factor 5B 
GSPT2                 0.017   peptide chain release factor 3 
EEFSEC                0.006   eukaryotic elongation factor, selenocysteine-tRNA-sp...
HGS                   0.005   hepatocyte growth factor-regulated tyrosine kinase su...
STIL                  0.004   SCL/TAL1 interrupting locus isoform 1 
STIL                  0.004   SCL/TAL1 interrupting locus isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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