Guide to the Human Genome
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Name: LOC727963 Sequence: fasta or formatted (263aa) NCBI GI: 239745282
Description:

PREDICTED: similar to elongation factor Tu GTP binding domain containing 1

Not currently referenced in the text

Other entries for this name:
alt mRNA {263aa} PREDICTED: similar to elongation factor Tu GTP binding domain con...
alt mRNA {263aa} PREDICTED: similar to elongation factor Tu GTP binding domain con...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         18           1
 C cysteine            3.0          8           1
 D aspartate           6.1         16           1
 E glutamate           3.8         10           2
 F phenylalanine       1.9          5           1
 G glycine            10.3         27           1
 H histidine           3.0          8           1
 I isoleucine          6.1         16           2
 K lysine              2.7          7           1
 L leucine             8.0         21           2
 M methionine          3.0          8           1
 N asparagine          3.0          8           1
 P proline             4.9         13           1
 Q glutamine           3.8         10           1
 R arginine           10.6         28           3
 S serine             10.3         27           2
 T threonine           3.0          8           2
 V valine              6.5         17           2
 W tryptophan          1.1          3           1
 Y tyrosine            1.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to elongation factor Tu GTP bind... 
LOC727963             1.000   PREDICTED: similar to elongation factor Tu GTP bind...
LOC727963             1.000   PREDICTED: similar to elongation factor Tu GTP bind...
EFTUD1                0.429   elongation factor Tu GTP binding domain containing 1...
EEF2                  0.204   eukaryotic translation elongation factor 2 
EFTUD1                0.170   elongation factor Tu GTP binding domain containing 1...
GUF1                  0.147   GUF1 GTPase homolog 
EFTUD2                0.115   elongation factor Tu GTP binding domain containing ...
EFTUD2                0.115   elongation factor Tu GTP binding domain containing ...
GFM1                  0.100   G elongation factor, mitochondrial 1 
GFM2                  0.098   mitochondrial elongation factor G2 isoform 2 
GFM2                  0.098   mitochondrial elongation factor G2 isoform 3 
GFM2                  0.098   mitochondrial elongation factor G2 isoform 1 
TUFM                  0.072   Tu translation elongation factor, mitochondrial prec...
HBS1L                 0.055   Hsp70 subfamily B suppressor 1-like protein isoform...
HBS1L                 0.055   Hsp70 subfamily B suppressor 1-like protein isoform 1...
EIF5B                 0.047   eukaryotic translation initiation factor 5B 
LOC100293909          0.045   PREDICTED: similar to eukaryotic translation elonga...
EEF1A1                0.045   eukaryotic translation elongation factor 1 alpha 1 [H...
EEF1A2                0.045   eukaryotic translation elongation factor 1 alpha 2 [H...
MTIF2                 0.029   mitochondrial translational initiation factor 2 prec...
MTIF2                 0.029   mitochondrial translational initiation factor 2 prec...
EEFSEC                0.023   eukaryotic elongation factor, selenocysteine-tRNA-sp...
GSPT2                 0.022   peptide chain release factor 3 
GSPT1                 0.022   G1 to S phase transition 1 isoform 3 
GSPT1                 0.022   G1 to S phase transition 1 isoform 2 
GSPT1                 0.022   G1 to S phase transition 1 isoform 1 
SEC24D                0.014   Sec24-related protein D 
CDAN1                 0.014   codanin 1 
SFRS17A               0.012   DNA segment on chromosome X and Y (unique) 155 expre...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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