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Search of human proteins with 251823730
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|251823730 cat eye syndrome chromosome region, candidate 6
isoform b [Homo sapiens]
(223 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|251823730 cat eye syndrome chromosome region, candidate 6 iso... 456 e-129
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof... 456 e-129
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 38 0.006
gi|169204952 PREDICTED: hypothetical protein [Homo sapiens] 37 0.010
gi|15029506 homeobox D8 [Homo sapiens] 37 0.018
gi|45331215 leucine zipper, putative tumor suppressor 2 [Homo sa... 37 0.018
gi|222144283 hypothetical protein LOC65998 [Homo sapiens] 36 0.023
gi|4504733 insulin receptor substrate 4 [Homo sapiens] 36 0.023
gi|239756547 PREDICTED: hypothetical protein [Homo sapiens] 36 0.023
gi|23592232 mediator complex subunit 19 [Homo sapiens] 36 0.023
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 36 0.030
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 36 0.030
gi|62177127 myosin heavy chain Myr 8 [Homo sapiens] 36 0.030
gi|55749531 splicing factor 3B subunit 2 [Homo sapiens] 36 0.030
gi|65508004 Wilms tumor 1 isoform D [Homo sapiens] 35 0.039
gi|65507908 Wilms tumor 1 isoform C [Homo sapiens] 35 0.039
gi|65507817 Wilms tumor 1 isoform B [Homo sapiens] 35 0.039
gi|65507714 Wilms tumor 1 isoform A [Homo sapiens] 35 0.039
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 35 0.039
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 35 0.039
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 35 0.039
gi|210032580 SET domain containing 1B [Homo sapiens] 35 0.039
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 35 0.051
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [... 35 0.051
gi|56118221 amyloid beta (A4) precursor protein-binding, family ... 35 0.067
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 35 0.067
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 35 0.067
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 35 0.067
gi|82546824 forkhead box K1 [Homo sapiens] 35 0.067
gi|38016943 calcium release-activated calcium channel protein 1 ... 34 0.088
>gi|251823730 cat eye syndrome chromosome region, candidate 6
isoform b [Homo sapiens]
Length = 223
Score = 456 bits (1173), Expect = e-129
Identities = 223/223 (100%), Positives = 223/223 (100%)
Query: 1 MALSVPLLYSLVRAISEAGAPPGSAGPLLLQPQRHRAAGCFLGTCLDLLDSFTLVELMLE 60
MALSVPLLYSLVRAISEAGAPPGSAGPLLLQPQRHRAAGCFLGTCLDLLDSFTLVELMLE
Sbjct: 1 MALSVPLLYSLVRAISEAGAPPGSAGPLLLQPQRHRAAGCFLGTCLDLLDSFTLVELMLE 60
Query: 61 GRVPLPAHLRYLLIAVYFLTLASPVLWLYELNAAAAAAASWGQASGPGSCSRLLRLLGGC 120
GRVPLPAHLRYLLIAVYFLTLASPVLWLYELNAAAAAAASWGQASGPGSCSRLLRLLGGC
Sbjct: 61 GRVPLPAHLRYLLIAVYFLTLASPVLWLYELNAAAAAAASWGQASGPGSCSRLLRLLGGC 120
Query: 121 LVDVPLLALRCLLVVSYQQPLSIFMLKNLFFLGCRGLEALEGCWDRGNRASPSRARGGYG 180
LVDVPLLALRCLLVVSYQQPLSIFMLKNLFFLGCRGLEALEGCWDRGNRASPSRARGGYG
Sbjct: 121 LVDVPLLALRCLLVVSYQQPLSIFMLKNLFFLGCRGLEALEGCWDRGNRASPSRARGGYG 180
Query: 181 APPSAPPPPPPPPQGGSQLGHCISENEGGAHGYVNTLAVASQN 223
APPSAPPPPPPPPQGGSQLGHCISENEGGAHGYVNTLAVASQN
Sbjct: 181 APPSAPPPPPPPPQGGSQLGHCISENEGGAHGYVNTLAVASQN 223
>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
a [Homo sapiens]
Length = 578
Score = 456 bits (1173), Expect = e-129
Identities = 223/223 (100%), Positives = 223/223 (100%)
Query: 1 MALSVPLLYSLVRAISEAGAPPGSAGPLLLQPQRHRAAGCFLGTCLDLLDSFTLVELMLE 60
MALSVPLLYSLVRAISEAGAPPGSAGPLLLQPQRHRAAGCFLGTCLDLLDSFTLVELMLE
Sbjct: 356 MALSVPLLYSLVRAISEAGAPPGSAGPLLLQPQRHRAAGCFLGTCLDLLDSFTLVELMLE 415
Query: 61 GRVPLPAHLRYLLIAVYFLTLASPVLWLYELNAAAAAAASWGQASGPGSCSRLLRLLGGC 120
GRVPLPAHLRYLLIAVYFLTLASPVLWLYELNAAAAAAASWGQASGPGSCSRLLRLLGGC
Sbjct: 416 GRVPLPAHLRYLLIAVYFLTLASPVLWLYELNAAAAAAASWGQASGPGSCSRLLRLLGGC 475
Query: 121 LVDVPLLALRCLLVVSYQQPLSIFMLKNLFFLGCRGLEALEGCWDRGNRASPSRARGGYG 180
LVDVPLLALRCLLVVSYQQPLSIFMLKNLFFLGCRGLEALEGCWDRGNRASPSRARGGYG
Sbjct: 476 LVDVPLLALRCLLVVSYQQPLSIFMLKNLFFLGCRGLEALEGCWDRGNRASPSRARGGYG 535
Query: 181 APPSAPPPPPPPPQGGSQLGHCISENEGGAHGYVNTLAVASQN 223
APPSAPPPPPPPPQGGSQLGHCISENEGGAHGYVNTLAVASQN
Sbjct: 536 APPSAPPPPPPPPQGGSQLGHCISENEGGAHGYVNTLAVASQN 578
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 38.1 bits (87), Expect = 0.006
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 172 PSRARGGYGAPPSAPPPPPPPPQGGSQLGHCISENEGGAHGYVNTLAV 219
P G PP PPPPPPPP GG++ S+ G H VN + V
Sbjct: 403 PDELAGLPPPPPPPPPPPPPPPAGGAK---PCSKTFGTMHELVNHVTV 447
Score = 32.3 bits (72), Expect = 0.33
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 182 PPSAPPPPPPPPQGGSQLGHCISENEGG 209
PP+ PPPPPPP L + N GG
Sbjct: 158 PPTPSPPPPPPPPPPPALSGYTTTNSGG 185
Score = 32.3 bits (72), Expect = 0.33
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 182 PPSAPPPPPPPPQGGSQLGHCISENEGG 209
P +PPPPPPPP + G+ + + GG
Sbjct: 159 PTPSPPPPPPPPPPPALSGYTTTNSGGG 186
Score = 30.0 bits (66), Expect = 1.7
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 181 APPSAPPPPPPPPQ 194
APP APPPPP P Q
Sbjct: 355 APPPAPPPPPAPAQ 368
Score = 27.7 bits (60), Expect = 8.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 185 APPPPPPPPQGGSQLGHCISENEGGAHG 212
APPP PPPP +Q H + GA G
Sbjct: 355 APPPAPPPPPAPAQHPHQHHPHLPGAAG 382
>gi|169204952 PREDICTED: hypothetical protein [Homo sapiens]
Length = 88
Score = 37.4 bits (85), Expect = 0.010
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 158 EALEGCWDRGNR-----ASPSRARGGYGAPPSAPPPPPPPPQGG 196
EAL+G RG+R A GG P PPPPPPPP G
Sbjct: 25 EALDGPVGRGHRRLGPGAQHCSRTGGLKPSPPLPPPPPPPPDRG 68
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 36.6 bits (83), Expect = 0.018
Identities = 19/49 (38%), Positives = 21/49 (42%)
Query: 153 GCRGLEALEGCWDRGNRASPSRARGGYGAPPSAPPPPPPPPQGGSQLGH 201
GC G E + SP+ A PP PPPPPPPP G H
Sbjct: 82 GCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPPCGGIACH 130
>gi|45331215 leucine zipper, putative tumor suppressor 2 [Homo
sapiens]
Length = 669
Score = 36.6 bits (83), Expect = 0.018
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 153 GCRGLEALEGCWDRGNRASPSRARGGYGAPPSAPPPPPPPPQGGSQLGHCISENE 207
G G G G RASP + G PPPPPPP L HC+ E +
Sbjct: 283 GSLGGRVAGGLLGSGTRASPDSSSCG-----ERSPPPPPPPPSDEALLHCVLEGK 332
>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
Length = 678
Score = 36.2 bits (82), Expect = 0.023
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 177 GGYGAPPSAPPPPPPPPQGGSQ 198
GG PP PPPPPPPP+ Q
Sbjct: 556 GGLALPPPPPPPPPPPPRSREQ 577
>gi|4504733 insulin receptor substrate 4 [Homo sapiens]
Length = 1257
Score = 36.2 bits (82), Expect = 0.023
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 153 GCRGLEALEGCWDRGNRASPSRARGGYGA---------PPSAPPPPPPPPQGGS 197
G +G + +G G R + R +G PP PPPPPPPP GG+
Sbjct: 590 GGKGSGSGKGSDGDGERGKSLKKRSYFGKLTQSKQQQMPPPPPPPPPPPPAGGT 643
>gi|239756547 PREDICTED: hypothetical protein [Homo sapiens]
Length = 240
Score = 36.2 bits (82), Expect = 0.023
Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 141 LSIFMLKNLFFLGCRGLEALEGCWDRGNRASPSRARG-------GYGAPPSAPPPPPPPP 193
LS +L GCR L W G+R PSRARG G P S P P PP
Sbjct: 5 LSPVLLAEGLASGCRACWELASFWATGHRDPPSRARGPPGRPSLRSGPPASGAPKTPTPP 64
>gi|23592232 mediator complex subunit 19 [Homo sapiens]
Length = 194
Score = 36.2 bits (82), Expect = 0.023
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 167 GNRASPSRARGGYGAPPSAPPPPPPPPQGG 196
G +A P G P PPPPPPPP GG
Sbjct: 9 GAQADPPPPPTALGFGPGKPPPPPPPPAGG 38
Score = 29.6 bits (65), Expect = 2.2
Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 178 GYGAPPSAPPPPPPPPQGG 196
G+G P PPPPPPP GG
Sbjct: 22 GFG-PGKPPPPPPPPAGGG 39
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 35.8 bits (81), Expect = 0.030
Identities = 15/29 (51%), Positives = 15/29 (51%)
Query: 165 DRGNRASPSRARGGYGAPPSAPPPPPPPP 193
D G P A G PP PPPPPPPP
Sbjct: 582 DSGTIIPPPPAPGDSTTPPPPPPPPPPPP 610
Score = 30.8 bits (68), Expect = 0.97
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 171 SPSRARGGYGAPP------SAPPPPPPPPQGGS 197
SPS GG PP SA PPPPPP GS
Sbjct: 656 SPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGS 688
Score = 27.7 bits (60), Expect = 8.2
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 172 PSRARGGYGAPPSAPP--------PPPPPPQGG 196
P G G PP PP PPPPP GG
Sbjct: 682 PPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGG 714
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 35.8 bits (81), Expect = 0.030
Identities = 15/29 (51%), Positives = 15/29 (51%)
Query: 165 DRGNRASPSRARGGYGAPPSAPPPPPPPP 193
D G P A G PP PPPPPPPP
Sbjct: 591 DSGTIIPPPPAPGDSTTPPPPPPPPPPPP 619
Score = 30.8 bits (68), Expect = 0.97
Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 171 SPSRARGGYGAPP------SAPPPPPPPPQGGS 197
SPS GG PP SA PPPPPP GS
Sbjct: 665 SPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGS 697
Score = 27.7 bits (60), Expect = 8.2
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 172 PSRARGGYGAPPSAPP--------PPPPPPQGG 196
P G G PP PP PPPPP GG
Sbjct: 691 PPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGG 723
>gi|62177127 myosin heavy chain Myr 8 [Homo sapiens]
Length = 1858
Score = 35.8 bits (81), Expect = 0.030
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 165 DRGNRASPSRAR---GGYGAPPSAPPPPPPPP 193
D ASP A G +PPS PPPPPPPP
Sbjct: 1549 DGDRPASPGLALFNGSGRASPPSTPPPPPPPP 1580
Score = 28.1 bits (61), Expect = 6.3
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 6/25 (24%)
Query: 169 RASPSRARGGYGAPPSAPPPPPPPP 193
RASP PP PPPP PPP
Sbjct: 1566 RASPP------STPPPPPPPPGPPP 1584
>gi|55749531 splicing factor 3B subunit 2 [Homo sapiens]
Length = 895
Score = 35.8 bits (81), Expect = 0.030
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 180 GAPPSAPPPPPPPPQGGSQLG 200
G PP PPPPPPPP G LG
Sbjct: 98 GLPPLQPPPPPPPPPPGLGLG 118
>gi|65508004 Wilms tumor 1 isoform D [Homo sapiens]
Length = 517
Score = 35.4 bits (80), Expect = 0.039
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 170 ASPSRARGGYGAPPSAPPPPPPPP 193
AS + GG PP+ PPPPPPPP
Sbjct: 113 ASAYGSLGGPAPPPAPPPPPPPPP 136
>gi|65507908 Wilms tumor 1 isoform C [Homo sapiens]
Length = 500
Score = 35.4 bits (80), Expect = 0.039
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 170 ASPSRARGGYGAPPSAPPPPPPPP 193
AS + GG PP+ PPPPPPPP
Sbjct: 113 ASAYGSLGGPAPPPAPPPPPPPPP 136
>gi|65507817 Wilms tumor 1 isoform B [Homo sapiens]
Length = 514
Score = 35.4 bits (80), Expect = 0.039
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 170 ASPSRARGGYGAPPSAPPPPPPPP 193
AS + GG PP+ PPPPPPPP
Sbjct: 113 ASAYGSLGGPAPPPAPPPPPPPPP 136
>gi|65507714 Wilms tumor 1 isoform A [Homo sapiens]
Length = 497
Score = 35.4 bits (80), Expect = 0.039
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 170 ASPSRARGGYGAPPSAPPPPPPPP 193
AS + GG PP+ PPPPPPPP
Sbjct: 113 ASAYGSLGGPAPPPAPPPPPPPPP 136
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 35.4 bits (80), Expect = 0.039
Identities = 14/23 (60%), Positives = 14/23 (60%)
Query: 178 GYGAPPSAPPPPPPPPQGGSQLG 200
G G PP PPPPPPPP S G
Sbjct: 387 GAGGPPMPPPPPPPPPPPSSGNG 409
Score = 33.5 bits (75), Expect = 0.15
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 172 PSRARGGYGAPPSAPPPPPPPPQG 195
P GG PP PPPPPPP G
Sbjct: 384 PPPGAGGPPMPPPPPPPPPPPSSG 407
Score = 30.8 bits (68), Expect = 0.97
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 169 RASPSRARGGYGAPP------SAPPPPPPPPQGG 196
R P RGG PP S P PPPPP GG
Sbjct: 357 RGPPPPGRGGPPPPPPPATGRSGPLPPPPPGAGG 390
Score = 30.8 bits (68), Expect = 0.97
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 172 PSRARGGYGAPPSAPPPPPPPP 193
P G G P PPPPPPPP
Sbjct: 382 PPPPPGAGGPPMPPPPPPPPPP 403
Score = 29.3 bits (64), Expect = 2.8
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 187 PPPPPPPQGGSQL 199
PPPPPP +GG+QL
Sbjct: 314 PPPPPPSRGGNQL 326
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 35.4 bits (80), Expect = 0.039
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 182 PPSAPPPPPPPPQGGS 197
PP APPPPPPPP G +
Sbjct: 578 PPGAPPPPPPPPPGSA 593
Score = 30.8 bits (68), Expect = 0.97
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
Query: 180 GAPPSAPPPPPP------PPQGGSQLGH 201
GAPP PPPPP PP+GG H
Sbjct: 580 GAPPPPPPPPPGSAGMMIPPRGGDGPSH 607
Score = 28.1 bits (61), Expect = 6.3
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 174 RARGGYGAPPSAP----PPPPPPPQG 195
R G G P P PPPPPPP G
Sbjct: 462 RLHQGKGMMPPPPMGMMPPPPPPPSG 487
Score = 27.7 bits (60), Expect = 8.2
Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
Query: 182 PPSAPPP---PPPPPQG 195
PP PPP PPPPP G
Sbjct: 479 PPPPPPPSGQPPPPPSG 495
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 35.4 bits (80), Expect = 0.039
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 182 PPSAPPPPPPPPQGGS 197
PP APPPPPPPP G +
Sbjct: 578 PPGAPPPPPPPPPGSA 593
Score = 29.3 bits (64), Expect = 2.8
Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Query: 180 GAPPSAPPPPPPPPQGG 196
GAPP PPPPPPP G
Sbjct: 580 GAPP--PPPPPPPGSAG 594
Score = 28.1 bits (61), Expect = 6.3
Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 174 RARGGYGAPPSAP----PPPPPPPQG 195
R G G P P PPPPPPP G
Sbjct: 462 RLHQGKGMMPPPPMGMMPPPPPPPSG 487
Score = 28.1 bits (61), Expect = 6.3
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 185 APPPPPPPPQGGS 197
APPPPPPPP S
Sbjct: 598 APPPPPPPPMDPS 610
Score = 27.7 bits (60), Expect = 8.2
Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
Query: 182 PPSAPPP---PPPPPQG 195
PP PPP PPPPP G
Sbjct: 479 PPPPPPPSGQPPPPPSG 495
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 35.4 bits (80), Expect = 0.039
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 180 GAPPSAPPPPPPPPQGG 196
G PP PPPPPPPPQ G
Sbjct: 686 GFPPLPPPPPPPPPQPG 702
Score = 33.9 bits (76), Expect = 0.11
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 172 PSRARGGYGAPPSAPPPPPPPP 193
P + G+ PP PPPPPPPP
Sbjct: 696 PPPPQPGFPMPPPLPPPPPPPP 717
Score = 31.2 bits (69), Expect = 0.74
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 182 PPSAPPPPPPPP 193
PP PPPPPPPP
Sbjct: 1544 PPQPPPPPPPPP 1555
Score = 30.4 bits (67), Expect = 1.3
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 182 PPSAPPPPPPPP 193
PP PPPPPPPP
Sbjct: 707 PPLPPPPPPPPP 718
Score = 27.7 bits (60), Expect = 8.2
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 182 PPSAPPPPPPPP 193
PP PP PPPPP
Sbjct: 1540 PPPLPPQPPPPP 1551
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 35.0 bits (79), Expect = 0.051
Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 182 PPSAP-PPPPPPPQGGSQLGHCISENEGGAHGYVNTLAVAS 221
PPS P PPPPPPP S L S EG + Y T A S
Sbjct: 786 PPSQPQPPPPPPPSPASLLKSLASVLEGQKYCYRGTGAAVS 826
Score = 31.6 bits (70), Expect = 0.57
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 182 PPSAPPPPPPPPQGG 196
PP PPPPPPPP G
Sbjct: 253 PPPPPPPPPPPPLPG 267
Score = 30.8 bits (68), Expect = 0.97
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 182 PPSAPPPPPPPP 193
PP PPPPPPPP
Sbjct: 248 PPPLPPPPPPPP 259
Score = 30.8 bits (68), Expect = 0.97
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 182 PPSAPPPPPPPP 193
PP PPPPPPPP
Sbjct: 252 PPPPPPPPPPPP 263
Score = 30.4 bits (67), Expect = 1.3
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 182 PPSAPPPPPPPP 193
PP PPPPPPPP
Sbjct: 249 PPLPPPPPPPPP 260
Score = 28.5 bits (62), Expect = 4.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 166 RGNRASPSRARGGYGAPPSAPPPPPPPP 193
RG + + G PP PPPPPPP
Sbjct: 231 RGCNSEQTGLPPGLPLPPPPLPPPPPPP 258
>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [Homo
sapiens]
Length = 1584
Score = 35.0 bits (79), Expect = 0.051
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 169 RASPSRARGGYG---APPSAPPPPPPPP 193
R+ PSR G APP+ PPPPPPPP
Sbjct: 1391 RSPPSRQPPSGGPPEAPPAQPPPPPPPP 1418
Score = 32.7 bits (73), Expect = 0.26
Identities = 11/13 (84%), Positives = 11/13 (84%)
Query: 182 PPSAPPPPPPPPQ 194
PP PPPPPPPPQ
Sbjct: 1411 PPPPPPPPPPPPQ 1423
Score = 29.6 bits (65), Expect = 2.2
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 182 PPSAPPPPPPPPQ 194
PP PPPPPPP Q
Sbjct: 1412 PPPPPPPPPPPQQ 1424
>gi|56118221 amyloid beta (A4) precursor protein-binding, family B,
member 1 interacting protein [Homo sapiens]
Length = 666
Score = 34.7 bits (78), Expect = 0.067
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 167 GNRASPSRARG----GYGAPPS--APPPPPPPPQGGSQL 199
G+ A+P +A+G G APP PPPPPPPP +L
Sbjct: 530 GSPATPLKAKGTGGGGLPAPPDDFLPPPPPPPPLDDPEL 568
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 34.7 bits (78), Expect = 0.067
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 170 ASPSRARGGYGAPPSAPPPPPPPP 193
+ P +GGY +APPPPPPPP
Sbjct: 658 SQPPYNQGGYSQGYTAPPPPPPPP 681
Score = 31.6 bits (70), Expect = 0.57
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 164 WDRGNRASP-SRARGGYGAPPSAPPPP--PPPPQ 194
W NR + S RG Y P PPP PPPPQ
Sbjct: 572 WGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQ 605
Score = 31.2 bits (69), Expect = 0.74
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 168 NRASPSRARGGYGAPPSAPPPPPPPPQGGSQLGHCISENEGGAHGY 213
NR S +RA P PPP PPP Q + + N GA Y
Sbjct: 584 NRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTY 629
Score = 29.3 bits (64), Expect = 2.8
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 178 GYGAPPSAPPPPPPPPQGGSQLGH 201
GY APP PPPPPP GS G+
Sbjct: 670 GYTAPPP-PPPPPPAYNYGSYGGY 692
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 34.7 bits (78), Expect = 0.067
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 170 ASPSRARGGYGAPPSAPPPPPPPP 193
+ P +GGY +APPPPPPPP
Sbjct: 758 SQPPYNQGGYSQGYTAPPPPPPPP 781
Score = 31.6 bits (70), Expect = 0.57
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 164 WDRGNRASP-SRARGGYGAPPSAPPPP--PPPPQ 194
W NR + S RG Y P PPP PPPPQ
Sbjct: 672 WGNNNRDNNNSNNRGSYNRAPQQQPPPQQPPPPQ 705
Score = 31.2 bits (69), Expect = 0.74
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 168 NRASPSRARGGYGAPPSAPPPPPPPPQGGSQLGHCISENEGGAHGY 213
NR S +RA P PPP PPP Q + + N GA Y
Sbjct: 684 NRGSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTY 729
Score = 29.3 bits (64), Expect = 2.8
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 178 GYGAPPSAPPPPPPPPQGGSQLGH 201
GY APP PPPPPP GS G+
Sbjct: 770 GYTAPPP-PPPPPPAYNYGSYGGY 792
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 34.7 bits (78), Expect = 0.067
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 162 GCWDRGNRASPSRARGGY---GAPPSAPPPPP-----PPPQGGSQ 198
G R +R+ P + +G G P PPPPP PPPQGG++
Sbjct: 291 GSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK 335
Score = 33.9 bits (76), Expect = 0.11
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 166 RGNRASPSRARGGY---GAPPSAPPPPP-----PPPQGGSQ 198
R +R+ P + +G G P PPPPP PPPQGG++
Sbjct: 171 RSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK 211
Score = 33.5 bits (75), Expect = 0.15
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 161 EGCWDRGNRASPSRARGGY---GAPPSAPPPPP-----PPPQGGSQ 198
+G R R+ P + +G G P PPPPP PPPQGG++
Sbjct: 104 QGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK 149
Score = 31.6 bits (70), Expect = 0.57
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 8/38 (21%)
Query: 169 RASPSRARGGY---GAPPSAPPPPP-----PPPQGGSQ 198
R+ P + +G G P PPPPP PPPQGG++
Sbjct: 236 RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK 273
Score = 31.2 bits (69), Expect = 0.74
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 5/24 (20%)
Query: 180 GAPPSAPPPPP-----PPPQGGSQ 198
G P PPPPP PPPQGG++
Sbjct: 65 GNQPQGPPPPPGKPQGPPPQGGNK 88
Score = 30.8 bits (68), Expect = 0.97
Identities = 20/46 (43%), Positives = 21/46 (45%), Gaps = 12/46 (26%)
Query: 165 DRGNRASPSRARGG-YGAPPSA------PPPPP-----PPPQGGSQ 198
D SPS G GAPP PP PP PPPQGG+Q
Sbjct: 22 DVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQ 67
Score = 29.3 bits (64), Expect = 2.8
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Query: 180 GAPPSAPPPPP----PPPQGGSQ 198
G P PPPP PPPQGGS+
Sbjct: 271 GNKPQGPPPPGKPQGPPPQGGSK 293
Score = 29.3 bits (64), Expect = 2.8
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Query: 180 GAPPSAPPPPP----PPPQGGSQ 198
G P PPPP PPPQGGS+
Sbjct: 333 GNKPQGPPPPGKPQGPPPQGGSK 355
Score = 28.5 bits (62), Expect = 4.8
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 168 NRASPSRARGGYGAPPSAPPP-----PPPPPQGG 196
N P GG P APP PP PPQGG
Sbjct: 376 NPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGG 409
>gi|82546824 forkhead box K1 [Homo sapiens]
Length = 733
Score = 34.7 bits (78), Expect = 0.067
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 170 ASPSRARGGYGAPPSAPPPPPPPPQGGSQLGHCISENEGGAHGYVNTLAVA 220
A+P A PP PPPPPPP G+ G + + GG+ G AVA
Sbjct: 37 AAPPPAPAQPQPPPGPPPPPPPPLPPGAIAG---AGSSGGSSGVSGDSAVA 84
>gi|38016943 calcium release-activated calcium channel protein 1
[Homo sapiens]
Length = 301
Score = 34.3 bits (77), Expect = 0.088
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 173 SRARGGYGAPPSAPPPPPPPPQGGSQLGHCISE 205
SR R G G PP APPPPP +G SE
Sbjct: 30 SRRRSGDGEPPGAPPPPPSAVTYPDWIGQSYSE 62
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.140 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,574,780
Number of Sequences: 37866
Number of extensions: 672923
Number of successful extensions: 18523
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 159
Number of HSP's that attempted gapping in prelim test: 11177
Number of HSP's gapped (non-prelim): 5117
length of query: 223
length of database: 18,247,518
effective HSP length: 98
effective length of query: 125
effective length of database: 14,536,650
effective search space: 1817081250
effective search space used: 1817081250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.