Guide to the Human Genome
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Name: LOC100131733 Sequence: fasta or formatted (88aa) NCBI GI: 169204952
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {86aa} PREDICTED: hypothetical protein
alt prot {86aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.3          2           1
 C cysteine            2.3          2           1
 D aspartate           2.3          2           1
 E glutamate           3.4          3           2
 F phenylalanine       2.3          2           1
 G glycine            14.8         13           2
 H histidine           3.4          3           1
 I isoleucine          1.1          1           1
 K lysine              2.3          2           1
 L leucine             9.1          8           1
 M methionine          2.3          2           1
 N asparagine          1.1          1           1
 P proline            17.0         15           8
 Q glutamine           5.7          5           1
 R arginine           14.8         13           2
 S serine              8.0          7           2
 T threonine           3.4          3           1
 V valine              1.1          1           1
 W tryptophan          2.3          2           2
 Y tyrosine            1.1          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131733          0.936   PREDICTED: hypothetical protein 
LOC100131733          0.936   PREDICTED: hypothetical protein 
KDM6B                 0.099   lysine (K)-specific demethylase 6B 
WT1                   0.087   Wilms tumor 1 isoform D 
WT1                   0.087   Wilms tumor 1 isoform C 
WT1                   0.087   Wilms tumor 1 isoform B 
WT1                   0.087   Wilms tumor 1 isoform A 
TRERF1                0.081   transcriptional regulating factor 1 
RAPH1                 0.076   Ras association and pleckstrin homology domains 1 is...
ZIC5                  0.076   zinc finger protein of the cerebellum 5 
CECR6                 0.070   cat eye syndrome chromosome region, candidate 6 iso...
CECR6                 0.070   cat eye syndrome chromosome region, candidate 6 isof...
LOC65998              0.070   hypothetical protein LOC65998 
PRIMA1                0.070   proline rich membrane anchor 1 precursor 
HOXD8                 0.070   homeobox D8 
PCLO                  0.070   piccolo isoform 2 
PCLO                  0.070   piccolo isoform 1 
KIAA1429              0.064   hypothetical protein LOC25962 isoform 1 
KIAA1429              0.064   hypothetical protein LOC25962 isoform 2 
LOC100293662          0.064   PREDICTED: hypothetical protein 
LOC100289444          0.064   PREDICTED: hypothetical protein 
LOC100289444          0.064   PREDICTED: hypothetical protein XP_002342754 
LOC100289444          0.064   PREDICTED: hypothetical protein 
BAI1                  0.064   brain-specific angiogenesis inhibitor 1 precursor [...
FASLG                 0.058   fas ligand 
CHD3                  0.058   chromodomain helicase DNA binding protein 3 isoform...
FMNL3                 0.058   formin-like 3 isoform 2 
FMNL3                 0.058   formin-like 3 isoform 1 
WAS                   0.058   Wiskott-Aldrich syndrome protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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