Search of human proteins with 121582460

Search of human proteins with 121582460

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|121582460 hypothetical protein LOC79762 [Homo sapiens]
         (142 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|121582460 hypothetical protein LOC79762 [Homo sapiens]             280   3e-76
gi|4505777 PHD finger protein 1 isoform a [Homo sapiens]               33   0.079
gi|222831660 family with sequence similarity 171, member A2 [Hom...    32   0.14 
gi|21493039 A-kinase anchor protein 4 isoform 2 [Homo sapiens]         31   0.30 
gi|21493037 A-kinase anchor protein 4 isoform 1 [Homo sapiens]         31   0.30 
gi|145580615 KRI1 homolog [Homo sapiens]                               30   0.52 
gi|7662010 zinc finger protein 516 [Homo sapiens]                      30   0.52 
gi|224591404 cancer/testis antigen family 147, member B1 [Homo s...    30   0.88 
gi|226497734 RNA binding motif protein 19 [Homo sapiens]               29   1.1  
gi|226497654 RNA binding motif protein 19 [Homo sapiens]               29   1.1  
gi|226497574 RNA binding motif protein 19 [Homo sapiens]               29   1.1  
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]           29   1.1  
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]           29   1.1  
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]           29   1.1  
gi|91208420 bassoon protein [Homo sapiens]                             29   1.1  
gi|153070260 myristoylated alanine-rich protein kinase C substra...    29   1.1  
gi|44680105 caldesmon 1 isoform 1 [Homo sapiens]                       29   1.1  
gi|33286446 opioid growth factor receptor [Homo sapiens]               29   1.5  
gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens]              29   1.5  
gi|56790299 pleckstrin and Sec7 domain containing [Homo sapiens]       29   1.5  
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f...    28   2.0  
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e...    28   2.0  
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d...    28   2.0  
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ...    28   2.0  
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ...    28   2.0  
gi|105990539 neurofilament, light polypeptide 68kDa [Homo sapiens]     28   2.0  
gi|167614504 laminin, beta 1 precursor [Homo sapiens]                  28   2.6  
gi|31795544 origin recognition complex, subunit 1 [Homo sapiens]       28   2.6  
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]           28   2.6  
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]          28   2.6  

>gi|121582460 hypothetical protein LOC79762 [Homo sapiens]
          Length = 142

 Score =  280 bits (716), Expect = 3e-76
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MTVGARLRSKAESSLLRRGPRGRGRTEGDEEAAAILEHLEYADEAEAAAESGTSAADERG 60
           MTVGARLRSKAESSLLRRGPRGRGRTEGDEEAAAILEHLEYADEAEAAAESGTSAADERG
Sbjct: 1   MTVGARLRSKAESSLLRRGPRGRGRTEGDEEAAAILEHLEYADEAEAAAESGTSAADERG 60

Query: 61  PGTRGARRVHFALLPERYEPLEEPAPSEQPRKRYRRKLKKYGKNVGKVIIKGCRYVVIGL 120
           PGTRGARRVHFALLPERYEPLEEPAPSEQPRKRYRRKLKKYGKNVGKVIIKGCRYVVIGL
Sbjct: 61  PGTRGARRVHFALLPERYEPLEEPAPSEQPRKRYRRKLKKYGKNVGKVIIKGCRYVVIGL 120

Query: 121 QGFAAAYSAPFAVATSVVSFVR 142
           QGFAAAYSAPFAVATSVVSFVR
Sbjct: 121 QGFAAAYSAPFAVATSVVSFVR 142


>gi|4505777 PHD finger protein 1 isoform a [Homo sapiens]
          Length = 457

 Score = 33.1 bits (74), Expect = 0.079
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 12  ESSLLRRGPRGRGRTEGDE--EAAAILEHLEYADEAEAAAESGTSAADERGPGTRGA 66
           + +L R GP GRG T   E  EA A     E   E+  A  + +SA   R PG  GA
Sbjct: 345 DGALTRAGPWGRGLTSPGEAPEAGARAPEEEAEGESGGAGATLSSAQSARAPGAEGA 401


>gi|222831660 family with sequence similarity 171, member A2 [Homo
           sapiens]
          Length = 826

 Score = 32.3 bits (72), Expect = 0.14
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 20  PRGRGRTEGD---EEAAAILEHLEYADEAEAAAESGTSAADERGPGTRGARR 68
           PRGRGR+ GD     A+ +      + E E  AE G  A D++ P  R   R
Sbjct: 767 PRGRGRSRGDSSRSSASELRRDSLTSPEDELGAEVGDEAGDKKSPWQRREER 818


>gi|21493039 A-kinase anchor protein 4 isoform 2 [Homo sapiens]
          Length = 845

 Score = 31.2 bits (69), Expect = 0.30
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 40  EYADEAEAAAESGTSAADERGPGTRGARRVHFALLPERYE 79
           +Y+++  A AE    AA    P  RG R +H   +P+ Y+
Sbjct: 704 KYSNDGAALAELEEQAASANKPNFRGTRCIHSGAMPQNYQ 743


>gi|21493037 A-kinase anchor protein 4 isoform 1 [Homo sapiens]
          Length = 854

 Score = 31.2 bits (69), Expect = 0.30
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 40  EYADEAEAAAESGTSAADERGPGTRGARRVHFALLPERYE 79
           +Y+++  A AE    AA    P  RG R +H   +P+ Y+
Sbjct: 713 KYSNDGAALAELEEQAASANKPNFRGTRCIHSGAMPQNYQ 752


>gi|145580615 KRI1 homolog [Homo sapiens]
          Length = 709

 Score = 30.4 bits (67), Expect = 0.52
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 43  DEAEAAAES-GTSAADERGPGTRGARRVHFALLPERYEPLEEPAP---SEQPRKRYRRKL 98
           +EAE  AE+ G    DE GP  +        + PE     EE AP    ++P  + RR+ 
Sbjct: 599 EEAETPAEATGKPQRDEAGPQRQLPALDGSLMGPESPPAQEEEAPVSPHKKPAPQKRRRA 658

Query: 99  KKYGKNVGKVIIKGCRYVVIGLQGF 123
           KK       V++ GC +    LQ F
Sbjct: 659 KKARLLGPTVMLGGCEFSRQRLQAF 683


>gi|7662010 zinc finger protein 516 [Homo sapiens]
          Length = 1163

 Score = 30.4 bits (67), Expect = 0.52
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 14  SLLRRGPRGRGRTEGDEEAAAILEHLEYADEAEAAAESGTSAADERGPGTRGARRVHFAL 73
           S + R  R    ++GD  A A    L   D A   +  G++ A    PG+  A     A 
Sbjct: 534 SRVHRRARRERDSDGDRAARARCGSLSEGDSASQPSSPGSACAAADSPGSGLADE---AA 590

Query: 74  LPERYEPLEEPAPSEQPRK 92
                E   EPAP  QPR+
Sbjct: 591 EDSGEEGAPEPAPGGQPRR 609


>gi|224591404 cancer/testis antigen family 147, member B1 [Homo
           sapiens]
          Length = 299

 Score = 29.6 bits (65), Expect = 0.88
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 30  EEAAAILEHLEYADEAEAAAESGTSAADERGPGTRGARRVHFALLPERYEPLEEPAPSE 88
           +EAA++ E    AD AE A E    AADE+ P      ++         E  EEPA  E
Sbjct: 197 QEAASVPEPAVPADLAEMAREPAEEAADEKPPEEAAEEKL-------TEEATEEPAAEE 248


>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 21/94 (22%), Positives = 37/94 (39%)

Query: 12  ESSLLRRGPRGRGRTEGDEEAAAILEHLEYADEAEAAAESGTSAADERGPGTRGARRVHF 71
           +S +++ G       E  E+ A   +    A+E +++A       D +G G         
Sbjct: 212 KSKMVKAGSSSSSEEEESEDEAVHCDEGSEAEEEDSSATPVLQERDSKGAGQEQGMPAGK 271

Query: 72  ALLPERYEPLEEPAPSEQPRKRYRRKLKKYGKNV 105
              PE     E+PA  ++P   +  KL+    NV
Sbjct: 272 KRPPEARAETEKPANQKEPTTCHTVKLRGAPFNV 305


>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 21/94 (22%), Positives = 37/94 (39%)

Query: 12  ESSLLRRGPRGRGRTEGDEEAAAILEHLEYADEAEAAAESGTSAADERGPGTRGARRVHF 71
           +S +++ G       E  E+ A   +    A+E +++A       D +G G         
Sbjct: 212 KSKMVKAGSSSSSEEEESEDEAVHCDEGSEAEEEDSSATPVLQERDSKGAGQEQGMPAGK 271

Query: 72  ALLPERYEPLEEPAPSEQPRKRYRRKLKKYGKNV 105
              PE     E+PA  ++P   +  KL+    NV
Sbjct: 272 KRPPEARAETEKPANQKEPTTCHTVKLRGAPFNV 305


>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 21/94 (22%), Positives = 37/94 (39%)

Query: 12  ESSLLRRGPRGRGRTEGDEEAAAILEHLEYADEAEAAAESGTSAADERGPGTRGARRVHF 71
           +S +++ G       E  E+ A   +    A+E +++A       D +G G         
Sbjct: 212 KSKMVKAGSSSSSEEEESEDEAVHCDEGSEAEEEDSSATPVLQERDSKGAGQEQGMPAGK 271

Query: 72  ALLPERYEPLEEPAPSEQPRKRYRRKLKKYGKNV 105
              PE     E+PA  ++P   +  KL+    NV
Sbjct: 272 KRPPEARAETEKPANQKEPTTCHTVKLRGAPFNV 305


>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 17  RRGPRGRGRTEGDEEAAAILEHLEYADEAEAAAESGTSAADERGPGTRGARR 68
           R GPRGR  + G   A     HL     A + A       + R PG+   RR
Sbjct: 226 REGPRGRAESRGSGPAQPA--HLPLPGPAHSPAPPAPELREGRAPGSTAGRR 275


>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 17  RRGPRGRGRTEGDEEAAAILEHLEYADEAEAAAESGTSAADERGPGTRGARR 68
           R GPRGR  + G   A     HL     A + A       + R PG+   RR
Sbjct: 226 REGPRGRAESRGSGPAQPA--HLPLPGPAHSPAPPAPELREGRAPGSTAGRR 275


>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
          Length = 460

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 17  RRGPRGRGRTEGDEEAAAILEHLEYADEAEAAAESGTSAADERGPGTRGARR 68
           R GPRGR  + G   A     HL     A + A       + R PG+   RR
Sbjct: 226 REGPRGRAESRGSGPAQPA--HLPLPGPAHSPAPPAPELREGRAPGSTAGRR 275


>gi|91208420 bassoon protein [Homo sapiens]
          Length = 3926

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 21/88 (23%), Positives = 35/88 (39%)

Query: 3   VGARLRSKAESSLLRRGPRGRGRTEGDEEAAAILEHLEYADEAEAAAESGTSAADERGPG 62
           VGA  R+   S L ++GP+G G+  G   A A     + +     A+             
Sbjct: 541 VGAPHRASGTSPLKQKGPQGLGQPSGPLPAKASPLSTKASPLPSKASPQAKPLRASEPSK 600

Query: 63  TRGARRVHFALLPERYEPLEEPAPSEQP 90
           T  + +     +P + EP+ +P P   P
Sbjct: 601 TPSSVQEKKTRVPTKAEPMPKPPPETTP 628


>gi|153070260 myristoylated alanine-rich protein kinase C substrate
           [Homo sapiens]
          Length = 332

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 24  GRTEGDEEAAAILEHLEYADEAEAAAESGTSAADERGPG---TRGARRVHFALLPERYEP 80
           G+ E    AAA       A   +AAA    +AA E G      + A+    A+ PE+   
Sbjct: 192 GKDEAAGGAAAAAAEAGAASGEQAAAPGEEAAAGEEGAAGGDPQEAKPQEAAVAPEKPPA 251

Query: 81  LEEPAPSEQPRKRYRRKLKKYG 102
            +E   +E+P K   +K ++ G
Sbjct: 252 SDETKAAEEPSKVEEKKAEEAG 273


>gi|44680105 caldesmon 1 isoform 1 [Homo sapiens]
          Length = 793

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 6   RLRSKAESSLLRRGPRGRGRTEGDEEAAAILEHLEYADEAEAAAESGTSAADERGPGTRG 65
           R R KAE    ++    R R E +E+AAA       A+E E   E    AA+ER      
Sbjct: 277 RERIKAEQD--KKIADERARIEAEEKAAAQERERREAEERERMREEEKRAAEERQRIKEE 334

Query: 66  ARRVHFALLPERYEPLEEPAPSEQPRKRYRRKLKK 100
            +R       ER    EE   + + R+R + + K+
Sbjct: 335 EKRA----AEERQRIKEEEKRAAEERQRIKEEEKR 365


>gi|33286446 opioid growth factor receptor [Homo sapiens]
          Length = 677

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 11  AESSLLRRGPRGRGRTEGDEEAAAILEHLEYADEAEAAAESGTSAADERGPGTRGARRVH 70
           AES     GPR  G   GDE A +  E         A  E   S ++  GP   G     
Sbjct: 535 AESPSETPGPRPAGPA-GDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAG----- 588

Query: 71  FALLPERYEPLEEPAPSEQPR 91
               P R EP E P+ +  PR
Sbjct: 589 ----PTRDEPAESPSETPGPR 605


>gi|40354216 sine oculis homeobox homolog 5 [Homo sapiens]
          Length = 739

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 5/43 (11%)

Query: 27 EGDEEAAAILEHLEYADEAEAAAE----SGTSAADERGPGTRG 65
          E +EEA  +L+ L+ A E EAAA     +G +AA   GPG+ G
Sbjct: 27 EEEEEARQLLQTLQAA-EGEAAAAAGAGAGAAAAGAEGPGSPG 68


>gi|56790299 pleckstrin and Sec7 domain containing [Homo sapiens]
          Length = 1024

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 29/110 (26%), Positives = 41/110 (37%), Gaps = 12/110 (10%)

Query: 10   KAESSLLRR------GPRGRGR-TEGDEEAAAILE-----HLEYADEAEAAAESGTSAAD 57
            KA +S LR       G +GRG+  E   +  A LE     +  YA       ++G+   D
Sbjct: 912  KAMASELREHRAAQLGKKGRGKEAEEQRQKEAYLEFEKSRYSTYAALLRVKLKAGSEELD 971

Query: 58   ERGPGTRGARRVHFALLPERYEPLEEPAPSEQPRKRYRRKLKKYGKNVGK 107
                    A      L P    P  +P PS QPR +      + G   G+
Sbjct: 972  AVEAALAQAGSTEDGLPPSHSSPSLQPKPSSQPRAQRHSSEPRPGAGSGR 1021


>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
            [Homo sapiens]
          Length = 1412

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 40   EYADEAEAAAESGTSAADERGPGTRGARRVHFAL--LPERYEPLEEPAPSE 88
            E +D++E +++S +S ++E G G +GA+  H  +   P R E L E   +E
Sbjct: 1064 ESSDDSEDSSDS-SSGSEEDGEGPQGAKSAHTLVGPTPSRTETLVEETAAE 1113


>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
            [Homo sapiens]
          Length = 1451

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 40   EYADEAEAAAESGTSAADERGPGTRGARRVHFAL--LPERYEPLEEPAPSE 88
            E +D++E +++S +S ++E G G +GA+  H  +   P R E L E   +E
Sbjct: 1103 ESSDDSEDSSDS-SSGSEEDGEGPQGAKSAHTLVGPTPSRTETLVEETAAE 1152


>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
            [Homo sapiens]
          Length = 1488

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 40   EYADEAEAAAESGTSAADERGPGTRGARRVH-FALLPERYEPLEEPAPSE 88
            E +D++E +++S +S ++E G G +GA+  H     P R E L E   +E
Sbjct: 1141 ESSDDSEDSSDS-SSGSEEDGEGPQGAKSAHTLGPTPSRTETLVEETAAE 1189


>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b [Homo
            sapiens]
          Length = 1411

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 40   EYADEAEAAAESGTSAADERGPGTRGARRVH-FALLPERYEPLEEPAPSE 88
            E +D++E +++S +S ++E G G +GA+  H     P R E L E   +E
Sbjct: 1064 ESSDDSEDSSDS-SSGSEEDGEGPQGAKSAHTLGPTPSRTETLVEETAAE 1112


>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a [Homo
            sapiens]
          Length = 1450

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 40   EYADEAEAAAESGTSAADERGPGTRGARRVH-FALLPERYEPLEEPAPSE 88
            E +D++E +++S +S ++E G G +GA+  H     P R E L E   +E
Sbjct: 1103 ESSDDSEDSSDS-SSGSEEDGEGPQGAKSAHTLGPTPSRTETLVEETAAE 1151


>gi|105990539 neurofilament, light polypeptide 68kDa [Homo sapiens]
          Length = 543

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 8/87 (9%)

Query: 9   SKAESSLLRRGPRGRGRTEGDEEAAAILEHLEYADEAEAAAESGTSAADER--GPGTRGA 66
           +KAE +  +  P   G  E +E+     E  E A+E EAA E    A +E   G G  G 
Sbjct: 461 AKAEEA--KDEPPSEGEAEEEEKDKEEAEEEEAAEEEEAAKEESEEAKEEEEGGEGEEGE 518

Query: 67  RRVHFALLPERYEPLEEPAPSEQPRKR 93
                    E  E   E A  EQ  K+
Sbjct: 519 ETKE----AEEEEKKVEGAGEEQAAKK 541


>gi|167614504 laminin, beta 1 precursor [Homo sapiens]
          Length = 1786

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query: 9    SKAESSLLRRGPRGRGRTEGDEEAAAILEHLEYADEAEAAAESGTSAADERGPGTR 64
            ++AE  L       +  T+    A  + E LE A++A+ AAE     ADE   GT+
Sbjct: 1569 ARAEMLLEEAKRASKSATDVKVTADMVKEALEEAEKAQVAAEKAIKQADEDIQGTQ 1624


>gi|31795544 origin recognition complex, subunit 1 [Homo sapiens]
          Length = 861

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 6   RLRSKAE---SSLLRRGPRGRGRTEGDEEAAAILEHLEYADEAEAAAESGTSAADERGPG 62
           R+R K+     + +R+  R  G ++ D+E   IL   E +D +    E+ T     R P 
Sbjct: 378 RIRRKSSVLTMNRIRQQLRFLGNSKSDQEEKEILPAAEISDSSSDEEEASTPPLPRRAPR 437

Query: 63  TRGARRVHFALLPERYEPLEEPAPSEQPR 91
           T  +R +  +L    +   + P  S +PR
Sbjct: 438 T-VSRNLRSSLKSSLHTLTKVPKKSLKPR 465


>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
          Length = 3333

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 24 GRTEGDEEAAAILE-HLEYADEAEAAAESGTSAADERGPG 62
          G T  D  AAA L  H  Y + AEAA    T+   ERGPG
Sbjct: 33 GATARDPGAAAGLSLHPTYFNLAEAARIWATATCGERGPG 72


>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
          Length = 3277

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 24 GRTEGDEEAAAILE-HLEYADEAEAAAESGTSAADERGPG 62
          G T  D  AAA L  H  Y + AEAA    T+   ERGPG
Sbjct: 33 GATARDPGAAAGLSLHPTYFNLAEAARIWATATCGERGPG 72


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,537,404
Number of Sequences: 37866
Number of extensions: 264358
Number of successful extensions: 1374
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1346
Number of HSP's gapped (non-prelim): 83
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.