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Search of human proteins with 12056465
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|12056465 fibrillarin [Homo sapiens]
(321 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|12056465 fibrillarin [Homo sapiens] 660 0.0
gi|109452587 family with sequence similarity 98, member B isofor... 94 2e-19
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 87 2e-17
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 87 2e-17
gi|55956899 keratin 9 [Homo sapiens] 80 3e-15
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 80 3e-15
gi|109148552 keratin 3 [Homo sapiens] 78 1e-14
gi|119395750 keratin 1 [Homo sapiens] 77 2e-14
gi|55956788 nucleolin [Homo sapiens] 76 3e-14
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 76 3e-14
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 76 5e-14
gi|109255251 loricrin [Homo sapiens] 73 4e-13
gi|195972866 keratin 10 [Homo sapiens] 72 7e-13
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 72 7e-13
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 72 7e-13
gi|47132620 keratin 2 [Homo sapiens] 72 7e-13
gi|15011916 nucleolar protein family A, member 1 [Homo sapiens] 71 1e-12
gi|9506713 nucleolar protein family A, member 1 [Homo sapiens] 71 1e-12
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s... 69 6e-12
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s... 69 6e-12
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s... 69 6e-12
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap... 69 6e-12
gi|56699482 hypothetical protein LOC25940 [Homo sapiens] 69 6e-12
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 67 2e-11
gi|194018511 keratin 77 [Homo sapiens] 67 3e-11
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 67 3e-11
gi|153791670 keratin 76 [Homo sapiens] 66 4e-11
gi|4502565 calpain, small subunit 1 [Homo sapiens] 66 4e-11
gi|51599151 calpain, small subunit 1 [Homo sapiens] 66 4e-11
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 66 4e-11
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 660 bits (1704), Expect = 0.0
Identities = 321/321 (100%), Positives = 321/321 (100%)
Query: 1 MKPGFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRG 60
MKPGFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRG
Sbjct: 1 MKPGFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRG 60
Query: 61 GGGFHSGGNRGRGRGGKRGNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGE 120
GGGFHSGGNRGRGRGGKRGNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGE
Sbjct: 61 GGGFHSGGNRGRGRGGKRGNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGE 120
Query: 121 KRVSISEGDDKIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDI 180
KRVSISEGDDKIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDI
Sbjct: 121 KRVSISEGDDKIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDI 180
Query: 181 VGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQP 240
VGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQP
Sbjct: 181 VGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQP 240
Query: 241 DQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLE 300
DQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLE
Sbjct: 241 DQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLE 300
Query: 301 PYERDHAVVVGVYRPPPKVKN 321
PYERDHAVVVGVYRPPPKVKN
Sbjct: 301 PYERDHAVVVGVYRPPPKVKN 321
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 94.0 bits (232), Expect = 2e-19
Identities = 49/82 (59%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 3 PGFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGG 62
P + R G GGRGG+G GG GGRGG GGG GRGG G G GGGGGGGGG GG GGG
Sbjct: 323 PPWQKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGG 382
Query: 63 GFHSGGNRGRGRGGKRGNQSGK 84
G GG +GRG G RG G+
Sbjct: 383 G--RGGFQGRGDYGGRGGYGGR 402
Score = 80.5 bits (197), Expect = 2e-15
Identities = 46/77 (59%), Positives = 48/77 (62%), Gaps = 10/77 (12%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGG 68
GGG GGRGG G GGRGG GG GGG G GG GGGGG GGGGGGGR GGF G
Sbjct: 341 GGGGGGRGGGGGGGGRGGWGGGGGGWGGGG-------GGGGGWGGGGGGGR--GGFQGRG 391
Query: 69 N-RGRGRGGKRGNQSGK 84
+ GRG G RG G+
Sbjct: 392 DYGGRGGYGGRGGYGGR 408
Score = 76.6 bits (187), Expect = 3e-14
Identities = 45/79 (56%), Positives = 49/79 (62%), Gaps = 8/79 (10%)
Query: 9 GGGFGGRGGFGD-----RGGRGGRGGFGGGRGRG-GGFRGRG--RGGGGGGGGGGGGGRG 60
GGG GGRGG+G GG GG GG+GGG G G GGF+GRG G GG GG GG GGRG
Sbjct: 350 GGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRG 409
Query: 61 GGGFHSGGNRGRGRGGKRG 79
G + GG G G GG G
Sbjct: 410 YGDPYGGGGGGGGGGGGGG 428
Score = 76.3 bits (186), Expect = 3e-14
Identities = 36/52 (69%), Positives = 37/52 (71%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRG 60
GGG GGRGGF RG GGRGG+GG G GG G GGGGGGGGGGGGG G
Sbjct: 378 GGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGGGGG 429
Score = 73.9 bits (180), Expect = 2e-13
Identities = 40/73 (54%), Positives = 45/73 (61%), Gaps = 12/73 (16%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRG-----GGFRGRGRGGG-------GGG 51
G+ GGG+GG GG G G GG GG GG +GRG GG+ GRG GG GGG
Sbjct: 358 GWGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYGGG 417
Query: 52 GGGGGGGRGGGGF 64
GGGGGGG GGGG+
Sbjct: 418 GGGGGGGGGGGGY 430
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 87.0 bits (214), Expect = 2e-17
Identities = 51/89 (57%), Positives = 56/89 (62%), Gaps = 14/89 (15%)
Query: 8 RGGGFGG--------RGGFG-DRGGRGG-RGGFGGGRGRG--GGFRGRGRGGGGGGGGGG 55
RGGG+GG RGG+G DRGG GG RGG+GG R RG GG RG G G GG GG
Sbjct: 487 RGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGY 546
Query: 56 GGGRGGGGFHSGGNRGRGRGGKRGNQSGK 84
GG R GGG+ GG+RG G GG RG GK
Sbjct: 547 GGDRSGGGY--GGDRGGGYGGDRGGYGGK 573
Score = 79.3 bits (194), Expect = 4e-15
Identities = 46/94 (48%), Positives = 51/94 (54%), Gaps = 18/94 (19%)
Query: 8 RGGGFGGRGGFGDRGGRGGR----------GGFGGGRGRGGGFRGRGRGGGGGG---GGG 54
RG G+GG G+ RGGRGG GG+GG R GGG+ G GGG GG GGG
Sbjct: 392 RGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGG 451
Query: 55 GGGGRGGG-----GFHSGGNRGRGRGGKRGNQSG 83
GG RGGG G GG+RG G GG RG G
Sbjct: 452 YGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGG 485
Score = 73.2 bits (178), Expect = 3e-13
Identities = 46/87 (52%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 7 PRGGGFGGRGGFGDRGGRGGRGGFGGGRG-----RGGGFRGRGRGGGGG-----GGGGGG 56
P GG F GRG G+RG RG RGG GG RG R GG G R GGG GGG G
Sbjct: 386 PSGGDFRGRGYGGERGYRG-RGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYG 444
Query: 57 GGRGGGGFHSGGNRGRGRGGKRGNQSG 83
G R GGG+ GG+RG G GG RG G
Sbjct: 445 GDRSGGGY--GGDRGGGYGGDRGGGYG 469
Score = 68.9 bits (167), Expect = 6e-12
Identities = 48/85 (56%), Positives = 54/85 (63%), Gaps = 13/85 (15%)
Query: 8 RGGGFGG-RGGF--GDRGGRGGR--GGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGG- 61
RGGG+GG RGG GDRGG GG GG+GG RG GG RG G GG GG GG GG GG
Sbjct: 464 RGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRG-GYGGDRGGYGGDRGGYGGD 522
Query: 62 ---GGFHSGGNRGRGRGGKRGNQSG 83
GG+ GG+RG G G G++SG
Sbjct: 523 RSRGGY--GGDRG-GGSGYGGDRSG 544
Score = 68.9 bits (167), Expect = 6e-12
Identities = 44/92 (47%), Positives = 51/92 (55%), Gaps = 12/92 (13%)
Query: 4 GFSPRGGGFGG-RGGFG-DRGGRGG---RGGFGGGRGRGGGFRGRGRGG------GGGGG 52
G+ GG+GG RGG+G DRGG GG RGG+GG RG G G+ G GG GGG G
Sbjct: 497 GYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYG 556
Query: 53 GGGGGGRGGGGFHSGGNRGRGRGGKRGNQSGK 84
G GGG GG GG G GR R +Q +
Sbjct: 557 GDRGGGYGGDRGGYGGKMG-GRNDYRNDQRNR 587
Score = 68.6 bits (166), Expect = 7e-12
Identities = 50/85 (58%), Positives = 54/85 (63%), Gaps = 12/85 (14%)
Query: 8 RGGGFGG-RGGF--GDRGGR--GGRGGFGGGRGRG-GGFRGRGRGG--GGGGGGGGGGGR 59
RGGG+GG RGG GDRGG G RGG+GG RG G GG RG G GG GG GG GG G
Sbjct: 456 RGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRG-GYGGDRGGYGGDRGGYGG 514
Query: 60 GGGGFHSGGNRGR-GRGGKRGNQSG 83
GG+ GG+R R G GG RG SG
Sbjct: 515 DRGGY--GGDRSRGGYGGDRGGGSG 537
Score = 67.8 bits (164), Expect = 1e-11
Identities = 42/80 (52%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRG-GGFRGRG----RGGGGGGGGGGGGGRGGGG 63
GGG+ G G GG GG+GG RG G GG RG G RGGG GG GG GG GGG
Sbjct: 431 GGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGG 490
Query: 64 FHSGGNRGRGRGGKRGNQSG 83
+ GG+RG G GG RG G
Sbjct: 491 Y--GGDRG-GYGGDRGGYGG 507
Score = 67.4 bits (163), Expect = 2e-11
Identities = 44/78 (56%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 9 GGGFGG-RGGFGDRGGRGGRGGFGGGRGRG-GGFRGRGRGGGGGG-GGGGGGGRGGGGFH 65
GGG+GG R G G G RGG G+GG RG G GG RG G GG GG GG GGG GG
Sbjct: 440 GGGYGGDRSGGGYGGDRGG--GYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGG 497
Query: 66 SGGNRGRGRGGKRGNQSG 83
GG+RG G GG RG G
Sbjct: 498 YGGDRG-GYGGDRGGYGG 514
Score = 66.6 bits (161), Expect = 3e-11
Identities = 44/83 (53%), Positives = 48/83 (57%), Gaps = 11/83 (13%)
Query: 9 GGGFGGR----GGF-GDR--GGRGG-RGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRG 60
GGG+GG GG+ GDR GG GG R G G G RGGG+ G GG GG GGG GG
Sbjct: 421 GGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDR 480
Query: 61 GGGFHSGGNRGRGRGGKRGNQSG 83
GG GG+RG G GG RG G
Sbjct: 481 GG---YGGDRGGGYGGDRGGYGG 500
Score = 66.2 bits (160), Expect = 4e-11
Identities = 41/76 (53%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRG-GGFRGRGRGGGGGGGGGGGGGRGGGGFHSG 67
GGG+GG G G G RGG G+GG RG G GG RG G GGG GG GG GG G
Sbjct: 449 GGGYGGDRGGGYGGDRGG--GYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYG 506
Query: 68 GNRGRGRGGKRGNQSG 83
G+RG G GG RG G
Sbjct: 507 GDRG-GYGGDRGGYGG 521
Score = 58.2 bits (139), Expect = 1e-08
Identities = 46/126 (36%), Positives = 51/126 (40%), Gaps = 47/126 (37%)
Query: 2 KPGFSPRGGGFGGRGGFGDRGGRGGRGGFGG----------------------------- 32
+P F GG GGR G G GRGG G GG
Sbjct: 318 RPEFMRGGGSGGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCN 377
Query: 33 ------GRGRGGGFRG---------RGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGK 77
R GG FRG RGRGG GG GG GG R GGG+ GG+R G GG
Sbjct: 378 EPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGY--GGDRSSG-GGY 434
Query: 78 RGNQSG 83
G++SG
Sbjct: 435 SGDRSG 440
Score = 35.8 bits (81), Expect = 0.052
Identities = 23/48 (47%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 24 RGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGG-RGGGGFHSGGNR 70
RG G GGGRGRGG + GRG G GG GG + GG G R
Sbjct: 172 RGYGGSQGGGRGRGG-YDKDGRGPMTGSSGGDRGGFKNFGGHRDYGPR 218
Score = 33.5 bits (75), Expect = 0.26
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 29 GFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRG 73
G+GG +G G G G + G G G GG RGG + GG+R G
Sbjct: 173 GYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFK-NFGGHRDYG 216
Score = 32.7 bits (73), Expect = 0.44
Identities = 22/46 (47%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 39 GFRGRGRGGGGGGGGGGGG----GRGGGGFHSGGNRG--RGRGGKR 78
G RG GG GGG G GG GRG SGG+RG + GG R
Sbjct: 168 GEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHR 213
Score = 32.0 bits (71), Expect = 0.76
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 11 GFGGRGGFGDRGGRGGRGGFG-GGRGRGGGFRGRGRGGGGGGGG 53
G RG G +GG GRGG+ GRG G G RGG GG
Sbjct: 168 GEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGG 211
Score = 30.0 bits (66), Expect = 2.9
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRG 44
G+ GG GRGG+ D+ GRG G G G GGF+ G
Sbjct: 173 GYGGSQGGGRGRGGY-DKDGRGPMTGSSG--GDRGGFKNFG 210
Score = 28.5 bits (62), Expect = 8.4
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 48 GGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRG 79
G GG GGG GRGG G GG RG
Sbjct: 173 GYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRG 204
Score = 28.5 bits (62), Expect = 8.4
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 56 GGGRGGGGFHSGGNRGRGRGGKRGN--QSGKNVMVEP 90
GGG GGG GG RGRG RG +SG V P
Sbjct: 324 GGGSGGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNP 360
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 87.0 bits (214), Expect = 2e-17
Identities = 51/89 (57%), Positives = 56/89 (62%), Gaps = 14/89 (15%)
Query: 8 RGGGFGG--------RGGFG-DRGGRGG-RGGFGGGRGRG--GGFRGRGRGGGGGGGGGG 55
RGGG+GG RGG+G DRGG GG RGG+GG R RG GG RG G G GG GG
Sbjct: 490 RGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGY 549
Query: 56 GGGRGGGGFHSGGNRGRGRGGKRGNQSGK 84
GG R GGG+ GG+RG G GG RG GK
Sbjct: 550 GGDRSGGGY--GGDRGGGYGGDRGGYGGK 576
Score = 79.3 bits (194), Expect = 4e-15
Identities = 46/94 (48%), Positives = 51/94 (54%), Gaps = 18/94 (19%)
Query: 8 RGGGFGGRGGFGDRGGRGGR----------GGFGGGRGRGGGFRGRGRGGGGGG---GGG 54
RG G+GG G+ RGGRGG GG+GG R GGG+ G GGG GG GGG
Sbjct: 395 RGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYGGDRSGGG 454
Query: 55 GGGGRGGG-----GFHSGGNRGRGRGGKRGNQSG 83
GG RGGG G GG+RG G GG RG G
Sbjct: 455 YGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGG 488
Score = 73.2 bits (178), Expect = 3e-13
Identities = 46/87 (52%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 7 PRGGGFGGRGGFGDRGGRGGRGGFGGGRG-----RGGGFRGRGRGGGGG-----GGGGGG 56
P GG F GRG G+RG RG RGG GG RG R GG G R GGG GGG G
Sbjct: 389 PSGGDFRGRGYGGERGYRG-RGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGGYG 447
Query: 57 GGRGGGGFHSGGNRGRGRGGKRGNQSG 83
G R GGG+ GG+RG G GG RG G
Sbjct: 448 GDRSGGGY--GGDRGGGYGGDRGGGYG 472
Score = 68.9 bits (167), Expect = 6e-12
Identities = 48/85 (56%), Positives = 54/85 (63%), Gaps = 13/85 (15%)
Query: 8 RGGGFGG-RGGF--GDRGGRGGR--GGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGG- 61
RGGG+GG RGG GDRGG GG GG+GG RG GG RG G GG GG GG GG GG
Sbjct: 467 RGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRG-GYGGDRGGYGGDRGGYGGD 525
Query: 62 ---GGFHSGGNRGRGRGGKRGNQSG 83
GG+ GG+RG G G G++SG
Sbjct: 526 RSRGGY--GGDRG-GGSGYGGDRSG 547
Score = 68.9 bits (167), Expect = 6e-12
Identities = 44/92 (47%), Positives = 51/92 (55%), Gaps = 12/92 (13%)
Query: 4 GFSPRGGGFGG-RGGFG-DRGGRGG---RGGFGGGRGRGGGFRGRGRGG------GGGGG 52
G+ GG+GG RGG+G DRGG GG RGG+GG RG G G+ G GG GGG G
Sbjct: 500 GYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYG 559
Query: 53 GGGGGGRGGGGFHSGGNRGRGRGGKRGNQSGK 84
G GGG GG GG G GR R +Q +
Sbjct: 560 GDRGGGYGGDRGGYGGKMG-GRNDYRNDQRNR 590
Score = 68.6 bits (166), Expect = 7e-12
Identities = 50/85 (58%), Positives = 54/85 (63%), Gaps = 12/85 (14%)
Query: 8 RGGGFGG-RGGF--GDRGGR--GGRGGFGGGRGRG-GGFRGRGRGG--GGGGGGGGGGGR 59
RGGG+GG RGG GDRGG G RGG+GG RG G GG RG G GG GG GG GG G
Sbjct: 459 RGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRG-GYGGDRGGYGGDRGGYGG 517
Query: 60 GGGGFHSGGNRGR-GRGGKRGNQSG 83
GG+ GG+R R G GG RG SG
Sbjct: 518 DRGGY--GGDRSRGGYGGDRGGGSG 540
Score = 67.8 bits (164), Expect = 1e-11
Identities = 42/80 (52%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRG-GGFRGRG----RGGGGGGGGGGGGGRGGGG 63
GGG+ G G GG GG+GG RG G GG RG G RGGG GG GG GG GGG
Sbjct: 434 GGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGG 493
Query: 64 FHSGGNRGRGRGGKRGNQSG 83
+ GG+RG G GG RG G
Sbjct: 494 Y--GGDRG-GYGGDRGGYGG 510
Score = 67.4 bits (163), Expect = 2e-11
Identities = 44/78 (56%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 9 GGGFGG-RGGFGDRGGRGGRGGFGGGRGRG-GGFRGRGRGGGGGG-GGGGGGGRGGGGFH 65
GGG+GG R G G G RGG G+GG RG G GG RG G GG GG GG GGG GG
Sbjct: 443 GGGYGGDRSGGGYGGDRGG--GYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGG 500
Query: 66 SGGNRGRGRGGKRGNQSG 83
GG+RG G GG RG G
Sbjct: 501 YGGDRG-GYGGDRGGYGG 517
Score = 66.6 bits (161), Expect = 3e-11
Identities = 44/83 (53%), Positives = 48/83 (57%), Gaps = 11/83 (13%)
Query: 9 GGGFGGR----GGF-GDR--GGRGG-RGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRG 60
GGG+GG GG+ GDR GG GG R G G G RGGG+ G GG GG GGG GG
Sbjct: 424 GGGYGGDRSSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGYGGDR 483
Query: 61 GGGFHSGGNRGRGRGGKRGNQSG 83
GG GG+RG G GG RG G
Sbjct: 484 GG---YGGDRGGGYGGDRGGYGG 503
Score = 66.2 bits (160), Expect = 4e-11
Identities = 41/76 (53%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRG-GGFRGRGRGGGGGGGGGGGGGRGGGGFHSG 67
GGG+GG G G G RGG G+GG RG G GG RG G GGG GG GG GG G
Sbjct: 452 GGGYGGDRGGGYGGDRGG--GYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYG 509
Query: 68 GNRGRGRGGKRGNQSG 83
G+RG G GG RG G
Sbjct: 510 GDRG-GYGGDRGGYGG 524
Score = 58.2 bits (139), Expect = 1e-08
Identities = 46/126 (36%), Positives = 51/126 (40%), Gaps = 47/126 (37%)
Query: 2 KPGFSPRGGGFGGRGGFGDRGGRGGRGGFGG----------------------------- 32
+P F GG GGR G G GRGG G GG
Sbjct: 321 RPEFMRGGGSGGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCN 380
Query: 33 ------GRGRGGGFRG---------RGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGK 77
R GG FRG RGRGG GG GG GG R GGG+ GG+R G GG
Sbjct: 381 EPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGY--GGDRSSG-GGY 437
Query: 78 RGNQSG 83
G++SG
Sbjct: 438 SGDRSG 443
Score = 35.8 bits (81), Expect = 0.052
Identities = 23/48 (47%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 24 RGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGG-RGGGGFHSGGNR 70
RG G GGGRGRGG + GRG G GG GG + GG G R
Sbjct: 175 RGYGGSQGGGRGRGG-YDKDGRGPMTGSSGGDRGGFKNFGGHRDYGPR 221
Score = 33.5 bits (75), Expect = 0.26
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 29 GFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRG 73
G+GG +G G G G + G G G GG RGG + GG+R G
Sbjct: 176 GYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFK-NFGGHRDYG 219
Score = 32.7 bits (73), Expect = 0.44
Identities = 22/46 (47%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 39 GFRGRGRGGGGGGGGGGGG----GRGGGGFHSGGNRG--RGRGGKR 78
G RG GG GGG G GG GRG SGG+RG + GG R
Sbjct: 171 GEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHR 216
Score = 32.0 bits (71), Expect = 0.76
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 11 GFGGRGGFGDRGGRGGRGGFG-GGRGRGGGFRGRGRGGGGGGGG 53
G RG G +GG GRGG+ GRG G G RGG GG
Sbjct: 171 GEDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGG 214
Score = 30.0 bits (66), Expect = 2.9
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRG 44
G+ GG GRGG+ D+ GRG G G G GGF+ G
Sbjct: 176 GYGGSQGGGRGRGGY-DKDGRGPMTGSSG--GDRGGFKNFG 213
Score = 28.5 bits (62), Expect = 8.4
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 48 GGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRG 79
G GG GGG GRGG G GG RG
Sbjct: 176 GYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRG 207
Score = 28.5 bits (62), Expect = 8.4
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 56 GGGRGGGGFHSGGNRGRGRGGKRGN--QSGKNVMVEP 90
GGG GGG GG RGRG RG +SG V P
Sbjct: 327 GGGSGGGRRGRGGYRGRGGFQGRGGDPKSGDWVCPNP 363
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 79.7 bits (195), Expect = 3e-15
Identities = 43/85 (50%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 10 GGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGR-----------GRGGGGGGGGGGGGG 58
GG GG GG RG RGG GG GG G GGG+ G G G G GGG GGG G
Sbjct: 476 GGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYG 535
Query: 59 RGGGGFHSGGNRGRGRGGKRGNQSG 83
G GG HSGG+ G GG GN G
Sbjct: 536 GGSGGGHSGGSGGGHSGGSGGNYGG 560
Score = 76.6 bits (187), Expect = 3e-14
Identities = 39/75 (52%), Positives = 41/75 (54%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGG 68
GGG G RGG G G G G G G G GGG G GG GGG GG GG GGG SGG
Sbjct: 507 GGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGG 566
Query: 69 NRGRGRGGKRGNQSG 83
G G GG G++ G
Sbjct: 567 GSGGGYGGGSGSRGG 581
Score = 74.3 bits (181), Expect = 1e-13
Identities = 39/73 (53%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 11 GFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNR 70
G GGRGG G GRG RGG GG G GG G G GGG G GG GG GGG GG+
Sbjct: 474 GLGGRGGSGGSYGRGSRGGSGGSYGGGGS--GGGYGGGSGSRGGSGGSYGGGSGSGGGSG 531
Query: 71 GRGRGGKRGNQSG 83
G GG G SG
Sbjct: 532 GGYGGGSGGGHSG 544
Score = 74.3 bits (181), Expect = 1e-13
Identities = 42/91 (46%), Positives = 46/91 (50%), Gaps = 15/91 (16%)
Query: 9 GGGFGGRGGFGDRGGRGGR------GGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGG- 61
GGG+GG G G GG GG G +GGG G GGG G G GGG G GG GG GG
Sbjct: 531 GGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGG-SGGGYGGGSGSRGGSGGSHGGG 589
Query: 62 -------GGFHSGGNRGRGRGGKRGNQSGKN 85
GG + GG G GG G SGK+
Sbjct: 590 SGFGGESGGSYGGGEEASGSGGGYGGGSGKS 620
Score = 72.8 bits (177), Expect = 4e-13
Identities = 42/77 (54%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 9 GGGFGGRG-GFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSG 67
GG +GG G G G GG G RGG GG G G G G G GGG GGG GGG G GG HSG
Sbjct: 494 GGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSG-SGGGSGGGYGGGSGGGHSGGSGGGHSG 552
Query: 68 GNRGR-GRGGKRGNQSG 83
G+ G G G G SG
Sbjct: 553 GSGGNYGGGSGSGGGSG 569
Score = 67.8 bits (164), Expect = 1e-11
Identities = 42/88 (47%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 6 SPRGGGFGGR--------GGFGDRGGRGGRGGFGG--GRGRGGGFRGRGRGGGGGGGGGG 55
S GGG GGR GG GRGG G FG G G GGGF GGG GGG G
Sbjct: 37 SSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRG 96
Query: 56 GGGRGGGGFHSGGNRGRGRGGKRGNQSG 83
GG GGG+ S G G G GG G G
Sbjct: 97 FGGASGGGYSSSGGFGGGFGGGSGGGFG 124
Score = 67.4 bits (163), Expect = 2e-11
Identities = 39/82 (47%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGG--GGGGGGRGG 61
G S GGG GG G G GG G G G G GG + G GGG GG GGG G RGG
Sbjct: 522 GGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGG 581
Query: 62 GGFHSGGNRGRGRGGKRGNQSG 83
G GG G G GG+ G G
Sbjct: 582 SGGSHGG--GSGFGGESGGSYG 601
Score = 65.5 bits (158), Expect = 6e-11
Identities = 36/77 (46%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRG--GGFRGRGRGGGGGGGGGGGGGRGGGGFHS 66
GGG G GG G G G GG GG G G GG G GG G GGG GGG GG G
Sbjct: 521 GGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRG 580
Query: 67 GGNRGRGRGGKRGNQSG 83
G G G G +SG
Sbjct: 581 GSGGSHGGGSGFGGESG 597
Score = 64.7 bits (156), Expect = 1e-10
Identities = 42/80 (52%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 4 GFSPRGGGFGG------RGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGG 57
G+S GG GG GGFG G RG G GGG GGF G G GGG GGG GGG
Sbjct: 70 GYSYGGGSGGGFSASSLGGGFGG-GSRGFGGASGGGYSSSGGFGG-GFGGGSGGGFGGGY 127
Query: 58 GRGGGGFHS-GGNRGRGRGG 76
G G GGF GG G G GG
Sbjct: 128 GSGFGGFGGFGGGAGGGDGG 147
Score = 62.8 bits (151), Expect = 4e-10
Identities = 37/76 (48%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRG--GGGGGGGGGGGGRGGGGFHS 66
GGG G G GG G GG GGG G G G RG G GGG G GG GG GGG +
Sbjct: 547 GGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEA 606
Query: 67 GGNRGRGRGGKRGNQS 82
G+ G G GG G S
Sbjct: 607 SGS-GGGYGGGSGKSS 621
Score = 62.8 bits (151), Expect = 4e-10
Identities = 34/73 (46%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 10 GGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGN 69
GG GG G G G G GG+GGG G GG G GGG G GG GG GGG SG
Sbjct: 552 GGSGGNYGGGSGSGGGSGGGYGGGSGSRGG-SGGSHGGGSGFGGESGGSYGGGEEASGSG 610
Query: 70 RGRGRGGKRGNQS 82
G G G + + S
Sbjct: 611 GGYGGGSGKSSHS 623
Score = 62.0 bits (149), Expect = 7e-10
Identities = 39/80 (48%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 13 GGRGGFGDRG----GRGGRGGFGGGRGRGG-GFRGRGRGGGGGGGG--------GGGGGR 59
GG+ F G G GGRGG GG GRG G G GGGG GGG GG GG
Sbjct: 460 GGQEDFESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGS 519
Query: 60 GGGGFHSGGNRGRGRGGKRG 79
GGG SGG G G GG G
Sbjct: 520 YGGGSGSGGGSGGGYGGGSG 539
Score = 58.9 bits (141), Expect = 6e-09
Identities = 41/87 (47%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 9 GGGFGGRGGFGDRGGRGGR-------GGFGGG-RG----RGGGFRGRGRGGGGGGGGGGG 56
G G GG G+ GG GG GGFGGG RG GGG+ G GGG GGG GG
Sbjct: 62 GRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGG 121
Query: 57 GGRGGGGFHSGGNRGRGRGGKRGNQSG 83
G GG G GG G G GG G G
Sbjct: 122 GFGGGYGSGFGGFGGFG-GGAGGGDGG 147
Score = 57.0 bits (136), Expect = 2e-08
Identities = 31/63 (49%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGG-----GGGGGGGRGGGG 63
G G GG G G GG G RGG GG G G GF G G GGG GGG GG G
Sbjct: 561 GSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGKS 620
Query: 64 FHS 66
HS
Sbjct: 621 SHS 623
Score = 56.6 bits (135), Expect = 3e-08
Identities = 40/85 (47%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGG-----GGGG 58
G S R G GG G FG G G GGF GGGF G RG GG GGG G GG
Sbjct: 55 GGSSRVCGRGGGGSFGYSYGGGSGGGFSAS-SLGGGFGGGSRGFGGASGGGYSSSGGFGG 113
Query: 59 RGGGGFHSGGNRGRGRGGKRGNQSG 83
GGG SGG G G G G G
Sbjct: 114 GFGGG--SGGGFGGGYGSGFGGFGG 136
Score = 54.7 bits (130), Expect = 1e-07
Identities = 36/79 (45%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 9 GGGFGGRGG-------FGDRGGRGGRGGFGGGRGRGGGF-RGRGRGGGGGGGGGGGGGRG 60
GGG G G F GG GG G F G GGG R GRGGGG G GGG
Sbjct: 19 GGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGGG-S 77
Query: 61 GGGFHSGGNRGRGRGGKRG 79
GGGF + G GG RG
Sbjct: 78 GGGFSASSLGGGFGGGSRG 96
Score = 50.8 bits (120), Expect = 2e-06
Identities = 32/61 (52%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 4 GFSPRGGGFGGR--GGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGG 61
G S GGG GG GG G RGG GG GGG G GG G GGG G GGG GG
Sbjct: 560 GGSGSGGGSGGGYGGGSGSRGGSGG--SHGGGSGFGG--ESGGSYGGGEEASGSGGGYGG 615
Query: 62 G 62
G
Sbjct: 616 G 616
Score = 47.0 bits (110), Expect = 2e-05
Identities = 27/59 (45%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 28 GGFGGGRGRGGGFRGR-GRGGGGGGGGGGGGGRGGGGFHSGGNR--GRGRGGKRGNQSG 83
GG GGG G GG R R GGGGGGG G+ G +R GRG GG G G
Sbjct: 16 GGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYG 74
Score = 43.5 bits (101), Expect = 3e-04
Identities = 29/68 (42%), Positives = 31/68 (45%), Gaps = 13/68 (19%)
Query: 21 RGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGG--------GGGG----GRGGGGFHSGG 68
R G GG GG G G + GGGGGGG GGG GRGGGG G
Sbjct: 13 RSGGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGG-SFGY 71
Query: 69 NRGRGRGG 76
+ G G GG
Sbjct: 72 SYGGGSGG 79
Score = 39.7 bits (91), Expect = 0.004
Identities = 24/51 (47%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 40 FRGRGRG----GGGGGGGG--GGGGRGG-GGFHSGGNRGRGRGGKRGNQSG 83
F G G GG GG GG G G RGG GG + GG G G GG G++ G
Sbjct: 465 FESSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGG 515
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 79.7 bits (195), Expect = 3e-15
Identities = 44/75 (58%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Query: 8 RGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSG 67
RGGGFGG FG G GRGGFGG RG GGG+ G G G G G GG GG G G +SG
Sbjct: 206 RGGGFGGNDNFGRGGNFSGRGGFGGSRG-GGGYGGSGDGYNGFGNDGGYGGGGPG--YSG 262
Query: 68 GNRGRGRGGK-RGNQ 81
G+RG G GG+ GNQ
Sbjct: 263 GSRGYGSGGQGYGNQ 277
Score = 69.7 bits (169), Expect = 3e-12
Identities = 43/81 (53%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 8 RGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGG--GGGRG-GGGF 64
RGG F GRGGFG G RGG GG+GG G G+ G G GG GGGG G GG RG G G
Sbjct: 218 RGGNFSGRGGFG--GSRGG-GGYGGS---GDGYNGFGNDGGYGGGGPGYSGGSRGYGSGG 271
Query: 65 HSGGNRGRGRGGKRGNQSGKN 85
GN+G G GG S N
Sbjct: 272 QGYGNQGSGYGGSGSYDSYNN 292
Score = 64.7 bits (156), Expect = 1e-10
Identities = 43/94 (45%), Positives = 48/94 (51%), Gaps = 15/94 (15%)
Query: 4 GFSPRGGGFGGRG----GFGDRGGRGGRG-GF-GGGRGRGGGFRGRGRGGGGGGG----- 52
G S GGG+GG G GFG+ GG GG G G+ GG RG G G +G G G G GG
Sbjct: 229 GGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYD 288
Query: 53 ----GGGGGGRGGGGFHSGGNRGRGRGGKRGNQS 82
GGGGG GG G + GG G NQS
Sbjct: 289 SYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQS 322
Score = 50.8 bits (120), Expect = 2e-06
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGR----GGGFRGRGR-----GGGGGGGGG 54
G+ +G G+GG G + D GG GGFGGG G GG + G G GG
Sbjct: 273 GYGNQGSGYGGSGSY-DSYNNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGG 331
Query: 55 GGGGRGGGGFHSGGN---RGRGRGGKRGNQSGKN 85
GGR G + GG + R +GG G+ S +
Sbjct: 332 NFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSS 365
Score = 41.2 bits (95), Expect = 0.001
Identities = 20/41 (48%), Positives = 22/41 (53%)
Query: 43 RGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSG 83
RGR G G GGG GGG GG G GRGG G++ G
Sbjct: 194 RGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGG 234
Score = 38.5 bits (88), Expect = 0.008
Identities = 26/65 (40%), Positives = 27/65 (41%), Gaps = 16/65 (24%)
Query: 23 GRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRG--RGRGGKRGN 80
GR G G FGGGRG GG GG GG F G G RG GG G+
Sbjct: 195 GRSGSGNFGGGRG--------------GGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGS 240
Query: 81 QSGKN 85
G N
Sbjct: 241 GDGYN 245
>gi|109148552 keratin 3 [Homo sapiens]
Length = 628
Score = 77.8 bits (190), Expect = 1e-14
Identities = 45/87 (51%), Positives = 47/87 (54%), Gaps = 13/87 (14%)
Query: 8 RGGGFGGR-----------GGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGG 56
R GGFGG GGFG G G GGFGGGRG GGGF G G GG GG GG G
Sbjct: 76 RAGGFGGGRSSCAFAGGYGGGFGSGYGGGFGGGFGGGRGMGGGFGGAGGFGGAGGFGGAG 135
Query: 57 GGRGGGGFHSGGNRGRGRGGKRGNQSG 83
G G GGF GG+ G G G G+ G
Sbjct: 136 GFGGPGGF--GGSGGFGGPGSLGSPGG 160
Score = 67.8 bits (164), Expect = 1e-11
Identities = 38/75 (50%), Positives = 39/75 (52%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGG 68
GGGFG G G GG GG G GGG G GGF G G GG GG GG GG G GGF G
Sbjct: 94 GGGFGSGYGGGFGGGFGGGRGMGGGFGGAGGFGGAGGFGGAGGFGGPGGFGGSGGFGGPG 153
Query: 69 NRGRGRGGKRGNQSG 83
+ G G G G
Sbjct: 154 SLGSPGGFGPGGFPG 168
Score = 65.9 bits (159), Expect = 5e-11
Identities = 36/59 (61%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSG 67
GGGFGG GGFG GG GG GGFGG GGF G G G GG G G GG G GGF G
Sbjct: 116 GGGFGGAGGFGGAGGFGGAGGFGG----PGGFGGSG-GFGGPGSLGSPGGFGPGGFPGG 169
Score = 59.3 bits (142), Expect = 4e-09
Identities = 44/106 (41%), Positives = 46/106 (43%), Gaps = 34/106 (32%)
Query: 10 GGFGGRGGFGDRGGRGG-------------------------RGGFGGGR-------GRG 37
GG GG G +G R G GG GGFGGGR G G
Sbjct: 36 GGAGG-GAYGFRSGAGGFGSRSLYNLGGNKSISISVAAGGSRAGGFGGGRSSCAFAGGYG 94
Query: 38 GGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSG 83
GGF G G GGG GGG GGG G GGG +GG G G G G G
Sbjct: 95 GGF-GSGYGGGFGGGFGGGRGMGGGFGGAGGFGGAGGFGGAGGFGG 139
Score = 59.3 bits (142), Expect = 4e-09
Identities = 41/96 (42%), Positives = 45/96 (46%), Gaps = 20/96 (20%)
Query: 6 SPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGG-----GGGGGGGGGGRG 60
S GG+GG G G GG GG GF G G G GF GRG GGG GGG G GG G
Sbjct: 532 SASAGGYGGGYGGGMGGGLGG--GFSAGGGSGSGF-GRGGGGGIGGGFGGGSSGFSGGSG 588
Query: 61 ------------GGGFHSGGNRGRGRGGKRGNQSGK 84
GGGF S NRG + +QS +
Sbjct: 589 FGSISGARYGVSGGGFSSASNRGGSIKFSQSSQSSQ 624
Score = 56.6 bits (135), Expect = 3e-08
Identities = 48/116 (41%), Positives = 52/116 (44%), Gaps = 30/116 (25%)
Query: 4 GFSPRGGGFGGRGGFGDRGGR---------GGR-GGFGGGR-------GRGGGFRGRGRG 46
GF GGFG R + G + G R GGFGGGR G GGGF G G G
Sbjct: 44 GFRSGAGGFGSRSLYNLGGNKSISISVAAGGSRAGGFGGGRSSCAFAGGYGGGF-GSGYG 102
Query: 47 GGGGGGGGGG-------GGRGG----GGF-HSGGNRGRGRGGKRGNQSGKNVMVEP 90
GG GGG GGG GG GG GGF +GG G G G G G + P
Sbjct: 103 GGFGGGFGGGRGMGGGFGGAGGFGGAGGFGGAGGFGGPGGFGGSGGFGGPGSLGSP 158
Score = 47.8 bits (112), Expect = 1e-05
Identities = 29/50 (58%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFG--GGRGRGGGFRGRGRGGGGGG 51
GF G GFGG GGFG GG GG GGFG G G GGF G GG GG
Sbjct: 124 GFGGAG-GFGGAGGFGGPGGFGGSGGFGGPGSLGSPGGF---GPGGFPGG 169
Score = 32.0 bits (71), Expect = 0.76
Identities = 17/31 (54%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 3 PGFSPRGGGFGGRGGFGDRGGRGGRGGFGGG 33
PG GGFGG G G GG G GGF GG
Sbjct: 140 PGGFGGSGGFGGPGSLGSPGG-FGPGGFPGG 169
Score = 32.0 bits (71), Expect = 0.76
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 50 GGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSGKNV 86
GG GGG GG GGG G + G G G G G +
Sbjct: 536 GGYGGGYGGGMGGGLGGGFSAGGGSGSGFGRGGGGGI 572
Score = 29.3 bits (64), Expect = 4.9
Identities = 26/76 (34%), Positives = 28/76 (36%), Gaps = 23/76 (30%)
Query: 28 GGFGGGRGRGGGFRGRGR----GGGGGGGGGGGGGR-GGGGFHS---------------- 66
GG G GR G R GG GGG G R G GGF S
Sbjct: 11 GGSQGFSGRSAVVSGSSRMSCVAHSGGAGGGAYGFRSGAGGFGSRSLYNLGGNKSISISV 70
Query: 67 --GGNRGRGRGGKRGN 80
GG+R G GG R +
Sbjct: 71 AAGGSRAGGFGGGRSS 86
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 77.4 bits (189), Expect = 2e-14
Identities = 47/92 (51%), Positives = 48/92 (52%), Gaps = 21/92 (22%)
Query: 9 GGGFGGRGGFGDR------------------GGRGGR--GGFGGGRGRGGGFRGRGRGGG 48
GG FG GGFG R GGRG GG+GGG GGGF G G GGG
Sbjct: 53 GGSFGAGGGFGSRSLVNLGGSKSISISVARGGGRGSGFGGGYGGGGFGGGGFGGGGFGGG 112
Query: 49 G-GGGGGGGGGRGGGGFHSGGNRGRGRGGKRG 79
G GGGG GG G GGGGF GG G G GG G
Sbjct: 113 GIGGGGFGGFGSGGGGFGGGGFGGGGYGGGYG 144
Score = 73.9 bits (180), Expect = 2e-13
Identities = 43/100 (43%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGR---------GRGGGGGGGGGGGGGR 59
GGG GGRG +G G G GG G G GGG G RGG GGGGGG GGR
Sbjct: 543 GGGGGGRGSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSGGR 602
Query: 60 GGGGFHSGGN---RGRGRGGKRGNQSGKNVMVEPHRHEGV 96
G GG SGG+ RG GG + + +V + GV
Sbjct: 603 GSGGGSSGGSIGGRGSSSGGVKSSGGSSSVKFVSTTYSGV 642
Score = 71.6 bits (174), Expect = 9e-13
Identities = 43/89 (48%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGR-----GGFGGGRGR---GGGFRGRGRGGGGGGGGGG 55
G RGGG GG G G G GG GG GGGRG GG G G G G GGGGG
Sbjct: 514 GGGSRGGGGGGYGSGGSSYGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGGGG 573
Query: 56 GGGRGGGGFHSGGNRGRGRGGKRGNQSGK 84
G G G G SGG RG GG G+ G+
Sbjct: 574 GHGSYGSGSSSGGYRGGSGGGGGGSSGGR 602
Score = 68.9 bits (167), Expect = 6e-12
Identities = 37/61 (60%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 8 RGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGG-GGGGRGGGGFHS 66
RGGG G G G GG G GGFGGG GGG G G GG G GGGG GGGG GGGG+
Sbjct: 82 RGGGRGSGFGGGYGGGGFGGGGFGGGGFGGGGIGGGGFGGFGSGGGGFGGGGFGGGGYGG 141
Query: 67 G 67
G
Sbjct: 142 G 142
Score = 68.6 bits (166), Expect = 7e-12
Identities = 39/83 (46%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGG-------GGRGG 61
GG +G GG G GGRG G G G GGG G G GGGG G G G GG GG
Sbjct: 536 GGSYGSGGGGG--GGRGSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSGG 593
Query: 62 GGFHSGGNRGRGRGGKRGNQSGK 84
GG S G RG G G G+ G+
Sbjct: 594 GGGGSSGGRGSGGGSSGGSIGGR 616
Score = 60.5 bits (145), Expect = 2e-09
Identities = 42/82 (51%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 8 RGGGFGGRGGFGDRGGRGGRGGFGGGRGR------GGG-------FRGRGRGGGGGGGGG 54
R GG GGR F GG GG G GGG G GG RG GRG G GGG G
Sbjct: 38 RSGGGGGR--FSSCGGGGGSFGAGGGFGSRSLVNLGGSKSISISVARGGGRGSGFGGGYG 95
Query: 55 GGGGRGGGGFHSGGNRGRGRGG 76
GGG GGGGF GG G G GG
Sbjct: 96 GGGF-GGGGFGGGGFGGGGIGG 116
Score = 44.7 bits (104), Expect = 1e-04
Identities = 23/37 (62%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGF 40
GF G G GG GGFG GG G GGFGGG G GGG+
Sbjct: 108 GFGGGGIGGGGFGGFGSGGGGFGGGGFGGG-GYGGGY 143
Score = 40.8 bits (94), Expect = 0.002
Identities = 22/52 (42%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGG 55
G GG+ G G G G GGRG GG GG GRG GG GG
Sbjct: 579 GSGSSSGGYRGGSGGGGGGSSGGRG--SGGGSSGGSIGGRGSSSGGVKSSGG 628
Score = 40.0 bits (92), Expect = 0.003
Identities = 32/91 (35%), Positives = 34/91 (37%), Gaps = 29/91 (31%)
Query: 18 FGDRGGRGGRGGFGGGRGRGGGFRGRG------RGGGGGG-----GGGGGGGRGGGGFHS 66
F R G GGF G ++ R R GGGGG GGGGG GGGF S
Sbjct: 5 FSSRSGYRSGGGFSSGSAGIINYQRRTTSSSTRRSGGGGGRFSSCGGGGGSFGAGGGFGS 64
Query: 67 ------------------GGNRGRGRGGKRG 79
GG RG G GG G
Sbjct: 65 RSLVNLGGSKSISISVARGGGRGSGFGGGYG 95
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 76.3 bits (186), Expect = 3e-14
Identities = 42/60 (70%), Positives = 43/60 (71%), Gaps = 7/60 (11%)
Query: 7 PRG-GGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFH 65
P+G GGFGGRGG GRGG GG GGGRG GGF GRGR GG GG GG GGRGGGG H
Sbjct: 647 PKGEGGFGGRGG-----GRGGFGGRGGGRGGRGGFGGRGR-GGFGGRGGFRGGRGGGGDH 700
Score = 62.4 bits (150), Expect = 5e-10
Identities = 36/69 (52%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 14 GRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRG 73
G GGFG RGG GRGGFGG RG GRGG GG GG G GG GG G GG G G
Sbjct: 649 GEGGFGGRGG--GRGGFGG--------RGGGRGGRGGFGGRGRGGFGGRGGFRGGRGGGG 698
Query: 74 RGGKRGNQS 82
+G ++
Sbjct: 699 DHKPQGKKT 707
Score = 61.2 bits (147), Expect = 1e-09
Identities = 36/62 (58%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 23 GRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQS 82
G GG GG GGGR GGF GRG GG GG GG GG GRGG G G GRG GG Q
Sbjct: 649 GEGGFGGRGGGR---GGFGGRG-GGRGGRGGFGGRGRGGFGGRGGFRGGRGGGGDHKPQG 704
Query: 83 GK 84
K
Sbjct: 705 KK 706
Score = 60.1 bits (144), Expect = 3e-09
Identities = 29/44 (65%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 4 GFSPRGGGFGGRGGFG--DRGGRGGRGGFGGGRGRGGGFRGRGR 45
GF RGGG GGRGGFG RGG GGRGGF GGRG GG + +G+
Sbjct: 662 GFGGRGGGRGGRGGFGGRGRGGFGGRGGFRGGRGGGGDHKPQGK 705
Score = 48.1 bits (113), Expect = 1e-05
Identities = 24/39 (61%), Positives = 25/39 (64%)
Query: 41 RGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRG 79
+G G GG GGG GG GGRGGG GG GRGRGG G
Sbjct: 648 KGEGGFGGRGGGRGGFGGRGGGRGGRGGFGGRGRGGFGG 686
Score = 29.3 bits (64), Expect = 4.9
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGF 30
GF RGG GGRGG GD +G + F
Sbjct: 683 GFGGRGGFRGGRGGGGDHKPQGKKTKF 709
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 76.3 bits (186), Expect = 3e-14
Identities = 46/91 (50%), Positives = 50/91 (54%), Gaps = 19/91 (20%)
Query: 8 RGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRG-----------RGGGGGGG---G 53
RGG FGGRGG+G GG G RG +GGG G GF G G RGG GGGG G
Sbjct: 239 RGGNFGGRGGYGGGGG-GSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYG 297
Query: 54 GGGGGRGGG----GFHSGGNRGRGRGGKRGN 80
GGG GGG G++ GGN G G G GN
Sbjct: 298 NQGGGYGGGGGYDGYNEGGNFGGGNYGGGGN 328
Score = 74.7 bits (182), Expect = 1e-13
Identities = 43/80 (53%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 5 FSPRGGGFGGRGG-FGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGG 63
F RGG FGG GG FG G GGRGG+GGG G G G G GG G GG GG GG G
Sbjct: 223 FMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPG 282
Query: 64 FHSGGNRGRGRGGKRGNQSG 83
+ S G G G G GNQ G
Sbjct: 283 YSSRGGYG-GGGPGYGNQGG 301
Score = 68.2 bits (165), Expect = 1e-11
Identities = 42/80 (52%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 8 RGGGFG---GRGG-FGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGG 63
RGGG G GRGG FG GG GRGG GGRG GG G RG GGG GG G G GG
Sbjct: 216 RGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGG 275
Query: 64 FHSGGNRGRGRGGKRGNQSG 83
+ GG RGG G G
Sbjct: 276 NYGGGPGYSSRGGYGGGGPG 295
Score = 65.5 bits (158), Expect = 6e-11
Identities = 40/87 (45%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRG-GFG---GGRGRGGGFRGRGRGGGGGGGG-GGGGG 58
GF GG +GG G+ RGG GG G G+G GG G GGG+ G GG GGG GGGG
Sbjct: 269 GFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGN 328
Query: 59 RGGGGFHSG---GNRGRGRGGKRGNQS 82
G +SG N G +GG G +S
Sbjct: 329 YNDFGNYSGQQQSNYGPMKGGSFGGRS 355
Score = 64.3 bits (155), Expect = 1e-10
Identities = 46/88 (52%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 1 MKPGFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGR--GGGGGGGGGGGGG 58
M+ S RG G GG G F RGG G GG G GRGG F GRG GGGGG G GGG
Sbjct: 207 MQSAGSQRGRG-GGSGNFMGRGGNFGGGG--GNFGRGGNFGGRGGYGGGGGGSRGSYGGG 263
Query: 59 RGG-GGF-HSGGNRGRGRG-GKRGNQSG 83
GG GF GGN G G G RG G
Sbjct: 264 DGGYNGFGGDGGNYGGGPGYSSRGGYGG 291
Score = 59.3 bits (142), Expect = 4e-09
Identities = 39/98 (39%), Positives = 45/98 (45%), Gaps = 23/98 (23%)
Query: 3 PGFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGG------------ 50
PG+S RGG GG G+G++GG G GG G GG F G GGGG
Sbjct: 281 PGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQ 340
Query: 51 -------GGGGGGGGRG---GGGFHSGGNRGRGRGGKR 78
GG GG G GGG+ SGG G G G +R
Sbjct: 341 SNYGPMKGGSFGGRSSGSPYGGGYGSGGGSG-GYGSRR 377
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 75.9 bits (185), Expect = 5e-14
Identities = 43/93 (46%), Positives = 52/93 (55%), Gaps = 14/93 (15%)
Query: 5 FSPRGGGFGGRGGFGDRG--------GRGGRGGFG----GGRGRGGGFRGRGRGGGGGGG 52
++ GG GG GG G+ G G G GG+G G G GG+ + RGG G GG
Sbjct: 161 YNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGG 220
Query: 53 GGGGGGRGGGGFH--SGGNRGRGRGGKRGNQSG 83
GGGGG GGGG++ SGG RGRGG RG + G
Sbjct: 221 SGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGG 253
Score = 67.8 bits (164), Expect = 1e-11
Identities = 42/91 (46%), Positives = 49/91 (53%), Gaps = 13/91 (14%)
Query: 11 GFGGRGGFG--DRGGRGGRGGFGGGRGRG--------GGFRGRGRGGGGGGGGGGGGGRG 60
G GG GG+G DRGGRG RGG GGG G G GG+ RGRGGG GG GG GG
Sbjct: 201 GGGGSGGYGQQDRGGRG-RGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSDR 259
Query: 61 GGGFHSGGNRGRG--RGGKRGNQSGKNVMVE 89
GG GG R +G ++ N + V+
Sbjct: 260 GGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQ 290
Score = 63.2 bits (152), Expect = 3e-10
Identities = 47/108 (43%), Positives = 48/108 (44%), Gaps = 43/108 (39%)
Query: 8 RGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGG---------- 57
RGGG GRGG G RGG GRGG+GGG G GGG GRGG GGGGGGG
Sbjct: 377 RGGG-NGRGGRG-RGGPMGRGGYGGG-GSGGG----GRGGFPSGGGGGGGQQRAGDWKCP 429
Query: 58 --------------------------GRGGGGFHSGGNRGRGRGGKRG 79
G G GG H GGN G R G RG
Sbjct: 430 NPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGGRG 477
Score = 57.0 bits (136), Expect = 2e-08
Identities = 44/112 (39%), Positives = 50/112 (44%), Gaps = 38/112 (33%)
Query: 10 GGFGGRGGFGDRG-GRGGRGGF------GGGRGRGGGFR--------------------- 41
GG GRGG+G G G GGRGGF GGG+ R G ++
Sbjct: 389 GGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCK 448
Query: 42 -------GRGRGGGGGGGGGGGGGRGG-GGFHSGGNRGRG--RGGKRGNQSG 83
G G GG GG G RGG GG+ GG RGRG RGG RG + G
Sbjct: 449 APKPDGPGGGPGGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGG 500
Score = 55.8 bits (133), Expect = 5e-08
Identities = 34/76 (44%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 3 PGFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGG 62
PG P G GG G RGGRGG GG+RGRG GG GG GGG RGG
Sbjct: 455 PGGGPGGSHMGGNYGDDRRGGRGGYDR--------GGYRGRGGDRGGFRGGRGGGDRGGF 506
Query: 63 GFHSGGNRGRGRGGKR 78
G +RG R +R
Sbjct: 507 GPGKMDSRGEHRQDRR 522
Score = 54.7 bits (130), Expect = 1e-07
Identities = 34/63 (53%), Positives = 36/63 (57%), Gaps = 10/63 (15%)
Query: 12 FGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRG 71
F R +RGG GR GGRGRGG GRGG GGGG GGG G GGF SGG G
Sbjct: 368 FATRRADFNRGGGNGR----GGRGRGGPM---GRGGYGGGGSGGG---GRGGFPSGGGGG 417
Query: 72 RGR 74
G+
Sbjct: 418 GGQ 420
Score = 52.4 bits (124), Expect = 5e-07
Identities = 44/101 (43%), Positives = 46/101 (45%), Gaps = 23/101 (22%)
Query: 9 GGGFGG-----RGGFGDRGGRGGRGGFGGG-----------RGRGGGFRGRGRGGGGGGG 52
GGG GG RGG G RGG GG GG GGG RGRGGG RG GRGG GG
Sbjct: 202 GGGSGGYGQQDRGGRG-RGGSGGGGGGGGGGYNRSSGGYEPRGRGGG-RG-GRGGMGGSD 258
Query: 53 GGG----GGGRGGGGFHSGGNRGRGRGGKRGNQSGKNVMVE 89
GG GG R G H G+NV +E
Sbjct: 259 RGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIE 299
Score = 45.1 bits (105), Expect = 9e-05
Identities = 39/120 (32%), Positives = 41/120 (34%), Gaps = 44/120 (36%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGR------------------------------------ 27
G+ G G GGRGGF GG GG
Sbjct: 396 GYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQCKAPKPDGP 455
Query: 28 -GGFGG-------GRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRG 79
GG GG G R GG G RGG G GG GG RGG G G G G+ RG
Sbjct: 456 GGGPGGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRG 515
Score = 42.7 bits (99), Expect = 4e-04
Identities = 33/103 (32%), Positives = 42/103 (40%), Gaps = 26/103 (25%)
Query: 7 PRGGGFGGRGGFG-DRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGG--------- 56
P+ G + + +G + G + + +G G + GGGGGGGGGG
Sbjct: 125 PQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSSM 184
Query: 57 ---GGRGG--------GGFHSGG-----NRGRGRGGKRGNQSG 83
GG GG GG SGG GRGRGG G G
Sbjct: 185 SSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGG 227
Score = 37.7 bits (86), Expect = 0.014
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFG-GGRGRGGGFRGRG 44
G++ GG+ RG G RGGRGG GG GG + GG R +G
Sbjct: 231 GYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQG 272
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 72.8 bits (177), Expect = 4e-13
Identities = 40/80 (50%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 9 GGGFGGRGG-----FGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGG 63
GGG GG GG FG G GG G G G GGG+ G G GGG GGGGGGG G GG
Sbjct: 23 GGGGGGSGGGGCGFFGGGGSGGGSSGSGCGYSGGGGYSGGGCGGGSSGGGGGGGIGGCGG 82
Query: 64 FHSGGNRGRGRGGKRGNQSG 83
G + G GG G SG
Sbjct: 83 GSGGSVKYSGGGGSSGGGSG 102
Score = 62.4 bits (150), Expect = 5e-10
Identities = 40/68 (58%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 13 GGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRG--GGGG--GGGGGGGGRGGGGFHSGG 68
GG GG G GG GG G FGGG G GGG G G G GGGG GGG GGG GGGG G
Sbjct: 21 GGGGGGGGSGG-GGCGFFGGG-GSGGGSSGSGCGYSGGGGYSGGGCGGGSSGGGGGGGIG 78
Query: 69 NRGRGRGG 76
G G GG
Sbjct: 79 GCGGGSGG 86
Score = 62.4 bits (150), Expect = 5e-10
Identities = 39/84 (46%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGG----GGGGGGR 59
G S GGG GG GG G GG GG + GG G GG G GGGG G GGGG
Sbjct: 66 GGSSGGGGGGGIGGCG--GGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSG 123
Query: 60 GGGGFHSGGNRGRGRGGKRGNQSG 83
GG G S G G GG SG
Sbjct: 124 GGSGCFSSGGGGSSGGGSGCFSSG 147
Score = 62.0 bits (149), Expect = 7e-10
Identities = 43/91 (47%), Positives = 44/91 (48%), Gaps = 17/91 (18%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGG----GGGGGG-----GGGGR 59
GGG G G G G G GG+ GG G GGG G G GGG GGG GG GGGG
Sbjct: 38 GGGGSGGGSSGSGCGYSGGGGYSGG-GCGGGSSGGGGGGGIGGCGGGSGGSVKYSGGGGS 96
Query: 60 GGGG---FHSGGNR----GRGRGGKRGNQSG 83
GGG F SGG G GG G SG
Sbjct: 97 SGGGSGCFSSGGGGSGCFSSGGGGSSGGGSG 127
Score = 60.5 bits (145), Expect = 2e-09
Identities = 43/98 (43%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 4 GFSPRGGGFGGRGGF---GDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGG------ 54
G S G G+ G GG+ G GG G GG GG G GGG G + GGGG G
Sbjct: 45 GSSGSGCGYSGGGGYSGGGCGGGSSGGGGGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCF 104
Query: 55 --GGGGRG----GGGFHSGGNRG---RGRGGKRGNQSG 83
GGGG G GGG SGG G G GG G SG
Sbjct: 105 SSGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSG 142
Score = 56.2 bits (134), Expect = 4e-08
Identities = 41/99 (41%), Positives = 42/99 (42%), Gaps = 22/99 (22%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGF-GGGRGRGGGFRGRGRGGG-------------- 48
G S G GG G F GG G G+ GGG G GGG G G G G
Sbjct: 163 GVSSGGSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSG-GSGSGYVSSQQVTQTSCAP 221
Query: 49 ----GGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSG 83
GGG GGGG G G F SGG G G G G SG
Sbjct: 222 QPSYGGGSSGGGGSGGSGCFSSGG--GGGSSGCGGGSSG 258
Score = 55.8 bits (133), Expect = 5e-08
Identities = 34/72 (47%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 22 GGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGG----GGGGRGGGGFHSGGNRGRGRGGK 77
GG GG GG GGG G GF G G GGG G G GGGG GGG G + G G GG
Sbjct: 21 GGGGGGGGSGGG---GCGFFGGGGSGGGSSGSGCGYSGGGGYSGGGCGGGSSGGGGGGGI 77
Query: 78 RGNQSGKNVMVE 89
G G V+
Sbjct: 78 GGCGGGSGGSVK 89
Score = 55.8 bits (133), Expect = 5e-08
Identities = 35/71 (49%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRG----GGGGGGGGGGGGRGGGGF 64
GGG G GG G G GG GG G GGG G G G GGG GGG G GGGG
Sbjct: 226 GGGSSGGGGSGGSGCFSSGGG-GGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGGS 284
Query: 65 HSGGNRGRGRG 75
GG+ G G+G
Sbjct: 285 SVGGS-GSGKG 294
Score = 54.3 bits (129), Expect = 1e-07
Identities = 31/68 (45%), Positives = 32/68 (47%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGG 63
G S GGG GG G F GG G G GG G G G G G GGG GGGG G
Sbjct: 227 GGSSGGGGSGGSGCFSSGGGGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGGSSV 286
Query: 64 FHSGGNRG 71
SG +G
Sbjct: 287 GGSGSGKG 294
Score = 53.9 bits (128), Expect = 2e-07
Identities = 39/94 (41%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Query: 5 FSPRGGGF--GGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRG-----RGGGGGGGGGGGG 57
FS GGG GG G F GG GG G GGGF G+ GG GG GGG
Sbjct: 114 FSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGG 173
Query: 58 ------GRGGGGF--HSGGNRGRGRGGKRGNQSG 83
G GGG +SGG G G G G+ SG
Sbjct: 174 SGCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSG 207
Score = 53.1 bits (126), Expect = 3e-07
Identities = 38/87 (43%), Positives = 40/87 (45%), Gaps = 17/87 (19%)
Query: 5 FSPRGGGFGGRGGFGDRGGRGGRGGF--GGGRGRGGGFRGRGRGGGGGGGGG------GG 56
+S GG GG G GG GG G F GGG GGG GGGG GGG GG
Sbjct: 90 YSGGGGSSGGGSGCFSSGG-GGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGG 148
Query: 57 GGRGG--------GGFHSGGNRGRGRG 75
GG G GG SGG+ G G G
Sbjct: 149 GGFSGQAVQCQSYGGVSSGGSSGGGSG 175
Score = 51.6 bits (122), Expect = 9e-07
Identities = 40/114 (35%), Positives = 44/114 (38%), Gaps = 33/114 (28%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRG--------------------GRGGFGGGRGRGGGFRGR 43
G+S G G GG G GG G G G GGG G G
Sbjct: 188 GYSGGGSGCGG----GSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGSGGSGCFSS 243
Query: 44 GRGGGGGGGGGGGGG-------RGGGGFHSGGNRGRGRGGKR--GNQSGKNVMV 88
G GGG G GGG G GGG GG+ G G GG G+ SGK V +
Sbjct: 244 GGGGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGGSSVGGSGSGKGVPI 297
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 72.0 bits (175), Expect = 7e-13
Identities = 42/81 (51%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRG-GGFRGRGRGGGGGGGGGGGGGRGGG 62
G S GG GG G G GG G G GGG G G GG G G GGG GGG GGG GGG
Sbjct: 457 GSSGGGGRGGGSFGGGYGGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGG 516
Query: 63 GFHSGGNRGRGRGGKRGNQSG 83
SGG+ G GG G SG
Sbjct: 517 S-SSGGHGGSSSGGYGGGSSG 536
Score = 70.9 bits (172), Expect = 1e-12
Identities = 41/79 (51%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRG---GGFRGRGRGG-GGGGGGGGGGGRGGGGF 64
GGG GG G G GG G G GGG G G GG G GG GGG GGGGGG GGG
Sbjct: 488 GGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSS 547
Query: 65 HSGGNRGRGRGGKRGNQSG 83
G + G G GG G+ SG
Sbjct: 548 GGGSSSGGGYGG--GSSSG 564
Score = 70.1 bits (170), Expect = 3e-12
Identities = 41/80 (51%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 5 FSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGG-GGGGGGGGGRGGGG 63
F GG+GG GGFG RG G G GG F G GGG GGG GGGG GGGG
Sbjct: 67 FGGSSGGYGGLGGFGGGSFRGSYGSSSFGGSYGGSFGGGSFGGGSFGGGSFGGGGFGGGG 126
Query: 64 FHSGGNRGRGRGGKRGNQSG 83
F GG G G GG G SG
Sbjct: 127 F--GGGFGGGFGGDGGLLSG 144
Score = 69.7 bits (169), Expect = 3e-12
Identities = 42/83 (50%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRG--RGGGFRGRGRGGG--GGGGGGG--GGGRGG- 61
GG FGG G G GG GG GGG G GGG+ G GGG GGG GGG GG GG
Sbjct: 466 GGSFGGGYGGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGS 525
Query: 62 -GGFHSGGNRGRGRGGKRGNQSG 83
G + GG+ G G GG G SG
Sbjct: 526 SSGGYGGGSSGGGGGGYGGGSSG 548
Score = 68.9 bits (167), Expect = 6e-12
Identities = 40/81 (49%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGR---GRGGGFRGRGRGGGGGGGGGG-GGGRGGGGF 64
GG GG G G GG GG+GGG G GG G GG GGGGGG GGG GGG
Sbjct: 492 GGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSSGGGS 551
Query: 65 HSGGNRGRG--RGGKRGNQSG 83
SGG G G GG + + SG
Sbjct: 552 SSGGGYGGGSSSGGHKSSSSG 572
Score = 63.5 bits (153), Expect = 2e-10
Identities = 38/83 (45%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGR--GGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGG 61
G S G GG GG GG GG GG+GGG GGG G GGG GGG GG G
Sbjct: 502 GSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGG---GGYGGGSSGGGSSSGGGYG 558
Query: 62 GGFHSGGNRGRGRGGKRGNQSGK 84
GG SGG++ G G S K
Sbjct: 559 GGSSSGGHKS-SSSGSVGESSSK 580
Score = 62.8 bits (151), Expect = 4e-10
Identities = 37/83 (44%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 9 GGGFGG--RGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGG-------GGGGGGGGGR 59
GGG+GG GG GG GG G G G GGG G G GGG GG GG G
Sbjct: 470 GGGYGGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGG 529
Query: 60 GGGGFHSGGNRGRGRGGKRGNQS 82
GGG GG G G G G S
Sbjct: 530 YGGGSSGGGGGGYGGGSSGGGSS 552
Score = 60.8 bits (146), Expect = 2e-09
Identities = 32/77 (41%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGG-GGGRGGG 62
G GGG+GG G GG G GG G GGG G G GGG GGG GGG G
Sbjct: 505 GGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSSGGGSSSGGGYGGGSSSG 564
Query: 63 GFHSGGNRGRGRGGKRG 79
G S + G +G
Sbjct: 565 GHKSSSSGSVGESSSKG 581
Score = 54.3 bits (129), Expect = 1e-07
Identities = 36/87 (41%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 6 SPRGGGFGGRGGFGDRGG------RGGRGGFGGGRGRGG---GFRGRGRGGGGGGGGGGG 56
S R GG GG GG G GG +G GGG GG G RG GGG GG G
Sbjct: 13 SSRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSSG 72
Query: 57 GGRGGGGFHSGGNRGRGRGGKRGNQSG 83
G G GGF G RG G G
Sbjct: 73 GYGGLGGFGGGSFRGSYGSSSFGGSYG 99
Score = 53.9 bits (128), Expect = 2e-07
Identities = 31/58 (53%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 26 GRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSG 83
G G GGG GRGGG GGG GGG GGG GGG H GG+ G GG G SG
Sbjct: 455 GEGSSGGG-GRGGG----SFGGGYGGGSSGGGSSGGG--HGGGHGGSSGGGYGGGSSG 505
Score = 51.2 bits (121), Expect = 1e-06
Identities = 38/83 (45%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Query: 9 GGGFGGRGGF---------GDRGGRGGRGGFGGG---RGRGGG--FRGRGRGGGGGGGGG 54
GGG GG GG G GG GGF GG RG GG F G G GG GG G
Sbjct: 22 GGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSSGGYGGLGGFG 81
Query: 55 GGGGRGGGGFHS-GGNRGRGRGG 76
GG RG G S GG+ G GG
Sbjct: 82 GGSFRGSYGSSSFGGSYGGSFGG 104
Score = 43.5 bits (101), Expect = 3e-04
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 40 FRGRGRGGGGGGGGGGGGGRGGGGF----HSGGNRGRGRGGKRGNQSG 83
+R G G GGGG GGG GGG+ GG+ G G GG G SG
Sbjct: 449 YRSLLEGEGSSGGGGRGGGSFGGGYGGGSSGGGSSGGGHGGGHGGSSG 496
Score = 38.1 bits (87), Expect = 0.011
Identities = 25/67 (37%), Positives = 27/67 (40%), Gaps = 14/67 (20%)
Query: 30 FGGGRGRGGGFRGRGRGGGGG-------------GGGGGGGGRGGGGFHSGGNRGRGRGG 76
+ R GGG G G GGGGG GGG GG GG F G + G GG
Sbjct: 11 YSSSRSGGGGGGG-GCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGG 69
Query: 77 KRGNQSG 83
G G
Sbjct: 70 SSGGYGG 76
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 72.0 bits (175), Expect = 7e-13
Identities = 46/94 (48%), Positives = 49/94 (52%), Gaps = 14/94 (14%)
Query: 6 SPRGGGFG------GRGGFGDRGG---RGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGG- 55
S RGG FG G G FG G RGG G+G GRG G G+ G G G GGG GG
Sbjct: 201 SGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSP 260
Query: 56 --GGGRG--GGGFHSGGNRGRGRGGKRGNQSGKN 85
GGGRG GGG GN+G G GG N G N
Sbjct: 261 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGN 294
Score = 62.0 bits (149), Expect = 7e-10
Identities = 41/106 (38%), Positives = 47/106 (44%), Gaps = 26/106 (24%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRG-RGGGFRGRGRGGGGGGGGGG------- 55
G P GG FGG G+G GGRGG GG G G G +GGG+ G GGG G G
Sbjct: 248 GGGPGGGNFGGSPGYG--GGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGN 305
Query: 56 ----------------GGGRGGGGFHSGGNRGRGRGGKRGNQSGKN 85
GG R GG + GGN G G G G G++
Sbjct: 306 YNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 351
Score = 58.5 bits (140), Expect = 8e-09
Identities = 40/92 (43%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 3 PGFSPRGG--GFGGRGGFGDR----GGRGGRGGFGGGRGRGGGFRGRGRGG---GGGGGG 53
PG + RGG G+G GFGD GG G G FGG G GGG G G GG G GGG
Sbjct: 223 PGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG 282
Query: 54 GGGG--GRGGGGFHSGGNRGRGRGGKRGNQSG 83
GGG GGG + SG G ++ + G
Sbjct: 283 YGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 314
Score = 57.0 bits (136), Expect = 2e-08
Identities = 36/82 (43%), Positives = 37/82 (45%), Gaps = 19/82 (23%)
Query: 21 RGGRGGRGGFGGGRGRGGGF------------------RGRGRGGGGGGGGGGGGGRGGG 62
R GRGG GFG RG GG F RG G G G GGG GGG GG
Sbjct: 200 RSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGS 259
Query: 63 GFHSGGNRGRGRGGK-RGNQSG 83
+ GG G G GG GNQ G
Sbjct: 260 PGYGGGRGGYGGGGPGYGNQGG 281
Score = 57.0 bits (136), Expect = 2e-08
Identities = 36/93 (38%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGG-GFRGRGRGGGGGGGGGGGGGRGGG 62
GF G+GG G G+ GG G GG GG G GG G+ +G G GGG GGG G G
Sbjct: 239 GFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSG 298
Query: 63 GFHSGGNRGRGRGG----KRGNQSGKNVMVEPH 91
++ GN + K GN G M P+
Sbjct: 299 NYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPY 331
Score = 28.9 bits (63), Expect = 6.4
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 7 PRGGGFGGRGGFGDRGGRGGRGGF 30
P GGG G GG G GG GGR +
Sbjct: 330 PYGGGNYGPGGSGGSGGYGGRSRY 353
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 72.0 bits (175), Expect = 7e-13
Identities = 46/94 (48%), Positives = 49/94 (52%), Gaps = 14/94 (14%)
Query: 6 SPRGGGFG------GRGGFGDRGG---RGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGG- 55
S RGG FG G G FG G RGG G+G GRG G G+ G G G GGG GG
Sbjct: 189 SGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSP 248
Query: 56 --GGGRG--GGGFHSGGNRGRGRGGKRGNQSGKN 85
GGGRG GGG GN+G G GG N G N
Sbjct: 249 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGN 282
Score = 62.0 bits (149), Expect = 7e-10
Identities = 41/106 (38%), Positives = 47/106 (44%), Gaps = 26/106 (24%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRG-RGGGFRGRGRGGGGGGGGGG------- 55
G P GG FGG G+G GGRGG GG G G G +GGG+ G GGG G G
Sbjct: 236 GGGPGGGNFGGSPGYG--GGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFGN 293
Query: 56 ----------------GGGRGGGGFHSGGNRGRGRGGKRGNQSGKN 85
GG R GG + GGN G G G G G++
Sbjct: 294 YNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRS 339
Score = 58.5 bits (140), Expect = 8e-09
Identities = 40/92 (43%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 3 PGFSPRGG--GFGGRGGFGDR----GGRGGRGGFGGGRGRGGGFRGRGRGG---GGGGGG 53
PG + RGG G+G GFGD GG G G FGG G GGG G G GG G GGG
Sbjct: 211 PGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG 270
Query: 54 GGGG--GRGGGGFHSGGNRGRGRGGKRGNQSG 83
GGG GGG + SG G ++ + G
Sbjct: 271 YGGGYDNYGGGNYGSGNYNDFGNYNQQPSNYG 302
Score = 57.0 bits (136), Expect = 2e-08
Identities = 36/82 (43%), Positives = 37/82 (45%), Gaps = 19/82 (23%)
Query: 21 RGGRGGRGGFGGGRGRGGGF------------------RGRGRGGGGGGGGGGGGGRGGG 62
R GRGG GFG RG GG F RG G G G GGG GGG GG
Sbjct: 188 RSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGS 247
Query: 63 GFHSGGNRGRGRGGK-RGNQSG 83
+ GG G G GG GNQ G
Sbjct: 248 PGYGGGRGGYGGGGPGYGNQGG 269
Score = 57.0 bits (136), Expect = 2e-08
Identities = 36/93 (38%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGG-GFRGRGRGGGGGGGGGGGGGRGGG 62
GF G+GG G G+ GG G GG GG G GG G+ +G G GGG GGG G G
Sbjct: 227 GFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSG 286
Query: 63 GFHSGGNRGRGRGG----KRGNQSGKNVMVEPH 91
++ GN + K GN G M P+
Sbjct: 287 NYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPY 319
Score = 28.9 bits (63), Expect = 6.4
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 7 PRGGGFGGRGGFGDRGGRGGRGGF 30
P GGG G GG G GG GGR +
Sbjct: 318 PYGGGNYGPGGSGGSGGYGGRSRY 341
>gi|47132620 keratin 2 [Homo sapiens]
Length = 639
Score = 72.0 bits (175), Expect = 7e-13
Identities = 45/84 (53%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 9 GGGFGGRGGFGDRG--GRGGR-------GGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGR 59
GGGFGG GGFG R G GG G GGG G GGF GRG G GGG GGG G
Sbjct: 50 GGGFGG-GGFGSRSLVGLGGTKSISISVAGGGGGFGAAGGFGGRGGGFGGGSSFGGGSGF 108
Query: 60 GGGGFHSGGNRGRGRGGKRGNQSG 83
GGGF GG G GR G G G
Sbjct: 109 SGGGF-GGGGFGGGRFGGFGGPGG 131
Score = 70.5 bits (171), Expect = 2e-12
Identities = 51/96 (53%), Positives = 52/96 (54%), Gaps = 20/96 (20%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGR--GRGGGFRGRGRGGGGGGGG--GGGGGRGGGGF 64
GGGFG GGFG RGG GFGGG G G GF G G GGGG GGG GG GG GG G
Sbjct: 80 GGGFGAAGGFGGRGG-----GFGGGSSFGGGSGFSGGGFGGGGFGGGRFGGFGGPGGVG- 133
Query: 65 HSGGNRGRGRGGKRG-------NQS---GKNVMVEP 90
GG G G GG G NQS NV V+P
Sbjct: 134 GLGGPGGFGPGGYPGGIHEVSVNQSLLQPLNVKVDP 169
Score = 68.2 bits (165), Expect = 1e-11
Identities = 38/82 (46%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRG----GGGF 64
GGG GG+G GG GGR G GGG +GG G G G GGG GGG RG GGG+
Sbjct: 554 GGGSISGGGYGSGGGSGGRYGSGGG-SKGGSISGGGYGSGGGKHSSGGGSRGGSSSGGGY 612
Query: 65 HSGGNRGRGRGGKRGNQSGKNV 86
SGG G G G +V
Sbjct: 613 GSGGGGSSSVKGSSGEAFGSSV 634
Score = 65.5 bits (158), Expect = 6e-11
Identities = 37/64 (57%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGG 63
GF RGGGFGG FG G G GGFGGG GG F G G G GG GG GG GG G GG
Sbjct: 88 GFGGRGGGFGGGSSFGGGSGFSG-GGFGGGGFGGGRFGGFG-GPGGVGGLGGPGGFGPGG 145
Query: 64 FHSG 67
+ G
Sbjct: 146 YPGG 149
Score = 63.9 bits (154), Expect = 2e-10
Identities = 46/98 (46%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 6 SPRGGGFG------GRGG--FGDRGGRGGRGGF-GGGRGRGGGFRGR-GRGGGGGGGGGG 55
S GGG+ G GG G RGG GG G GGG G GGG GR G GGG GG
Sbjct: 526 SSSGGGYSSGSSSYGSGGRQSGSRGGSGGGGSISGGGYGSGGGSGGRYGSGGGSKGGSIS 585
Query: 56 GGGRG-GGGFHSGGNRGRG---RGGKRGNQSGKNVMVE 89
GGG G GGG HS G RG GG G+ G + V+
Sbjct: 586 GGGYGSGGGKHSSGGGSRGGSSSGGGYGSGGGGSSSVK 623
Score = 61.6 bits (148), Expect = 9e-10
Identities = 41/89 (46%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 10 GGFGGRGGFGDRG--------GRGGR-GGFGGGRGRGGGFRGRGRGGGGG-GG--GGGGG 57
GG GGRG G G GGR G GG G GG G G G GGG GG G GGG
Sbjct: 519 GGSGGRGSSSGGGYSSGSSSYGSGGRQSGSRGGSGGGGSISGGGYGSGGGSGGRYGSGGG 578
Query: 58 GRG----GGGFHSGGNRGRGRGGKRGNQS 82
+G GGG+ SGG + GG RG S
Sbjct: 579 SKGGSISGGGYGSGGGKHSSGGGSRGGSS 607
Score = 58.2 bits (139), Expect = 1e-08
Identities = 32/68 (47%), Positives = 33/68 (48%)
Query: 16 GGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRG 75
GG G RG G G G G G R G GG GGGG GG G G SGG G G G
Sbjct: 519 GGSGGRGSSSGGGYSSGSSSYGSGGRQSGSRGGSGGGGSISGGGYGSGGGSGGRYGSGGG 578
Query: 76 GKRGNQSG 83
K G+ SG
Sbjct: 579 SKGGSISG 586
Score = 48.5 bits (114), Expect = 8e-06
Identities = 37/83 (44%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 6 SPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGG---GGGGGGGGGRGGG 62
S GGG GG GG GG G R G G + G GGG GG GG GGG GGG
Sbjct: 44 SRHGGGGGGFGG----GGFGSRSLVGLGGTKSISISVAGGGGGFGAAGGFGGRGGGFGGG 99
Query: 63 -------GFHSGGNRGRGRGGKR 78
GF GG G G GG R
Sbjct: 100 SSFGGGSGFSGGGFGGGGFGGGR 122
Score = 48.1 bits (113), Expect = 1e-05
Identities = 37/94 (39%), Positives = 38/94 (40%), Gaps = 24/94 (25%)
Query: 8 RGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGG---------- 57
RGGG GG GF G GG R F R GGGGGG GGGG
Sbjct: 12 RGGGGGGFRGFSS----GSAVVSGGSRRSTSSFSCLSRHGGGGGGFGGGGFGSRSLVGLG 67
Query: 58 ---------GRGGGGFHSGGNRGRGRGGKRGNQS 82
GGGGF + G G GRGG G S
Sbjct: 68 GTKSISISVAGGGGGFGAAGGFG-GRGGGFGGGS 100
Score = 38.5 bits (88), Expect = 0.008
Identities = 24/52 (46%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGF--GGGRGRGGGFRGRGRGGGGGGGG 53
G S GGG+G GG GG G RGG GGG G GGG +G G G
Sbjct: 581 GGSISGGGYGSGGGKHSSGG-GSRGGSSSGGGYGSGGGGSSSVKGSSGEAFG 631
Score = 36.6 bits (83), Expect = 0.031
Identities = 28/87 (32%), Positives = 30/87 (34%), Gaps = 44/87 (50%)
Query: 41 RGRGRGGGGGG---------------------------GGGGGGGRGGGGFHS------- 66
+ RGRGGGGGG GGGGGG GGGGF S
Sbjct: 8 KSRGRGGGGGGFRGFSSGSAVVSGGSRRSTSSFSCLSRHGGGGGGFGGGGFGSRSLVGLG 67
Query: 67 ----------GGNRGRGRGGKRGNQSG 83
GG G G G G + G
Sbjct: 68 GTKSISISVAGGGGGFGAAGGFGGRGG 94
>gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 71.2 bits (173), Expect = 1e-12
Identities = 40/58 (68%), Positives = 40/58 (68%), Gaps = 11/58 (18%)
Query: 7 PRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGG--GGGGGGGRGGG 62
PRGGG GGRGG GRGG G G GRGGGFRG GRGGGGGG GG GGG RG G
Sbjct: 168 PRGGGRGGRGG--------GRGGGGRGGGRGGGFRG-GRGGGGGGFRGGRGGGFRGRG 216
Score = 65.5 bits (158), Expect = 6e-11
Identities = 48/122 (39%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 13 GGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGR 72
GGRGGF RGG GGG RGG RGGGGGGGGG G G GGF GG RG
Sbjct: 6 GGRGGFN-------RGGGGGGFNRGGS-SNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGG 57
Query: 73 GRGGKRGNQSGKNVMVEPHRH--EGVFICRGKEDALVTKNLVP--GESVYGEKRVSISEG 128
G+ + V++ H E +C+ D +N VP VY E + I +
Sbjct: 58 FNKGQDQGPPERVVLLGEFLHPCEDDIVCKCTTD----ENKVPYFNAPVYLENKEQIGKV 113
Query: 129 DD 130
D+
Sbjct: 114 DE 115
Score = 59.3 bits (142), Expect = 4e-09
Identities = 32/52 (61%), Positives = 32/52 (61%)
Query: 28 GGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRG 79
G G RG G G RG GRGGGG GGG GGG RGG G GG RG GG RG
Sbjct: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRG 214
Score = 55.5 bits (132), Expect = 6e-08
Identities = 31/45 (68%), Positives = 31/45 (68%), Gaps = 4/45 (8%)
Query: 4 GFSPRGGGFGGRGGFGDRGG--RGGRGGFGGG--RGRGGGFRGRG 44
G RGGG GG G G RGG RGGRGG GGG GRGGGFRGRG
Sbjct: 172 GRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
Score = 53.5 bits (127), Expect = 2e-07
Identities = 34/58 (58%), Positives = 35/58 (60%), Gaps = 10/58 (17%)
Query: 8 RGGGFGG--RGGFG---DRGG-----RGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGG 55
RGGG GG RGG G +RGG RGG GG GGG RGGG G GRGGG GG G
Sbjct: 4 RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKG 61
Score = 53.5 bits (127), Expect = 2e-07
Identities = 30/50 (60%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 35 GRGGGFRGRGRGGGGGG-GGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSG 83
G G RG GRGG GGG GGGG GG GGGF G RG G GG RG + G
Sbjct: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFR--GGRGGGGGGFRGGRGG 210
Score = 46.2 bits (108), Expect = 4e-05
Identities = 33/61 (54%), Positives = 36/61 (59%), Gaps = 13/61 (21%)
Query: 4 GFSPRGGGFGG--RGGFGD--RGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGR 59
GF+ RGGG GG RGG + RGG GG GG G FRG GRGG G GGG GG +
Sbjct: 10 GFN-RGGGGGGFNRGGSSNHFRGGGGGGGG--------GNFRGGGRGGFGRGGGRGGFNK 60
Query: 60 G 60
G
Sbjct: 61 G 61
Score = 39.7 bits (91), Expect = 0.004
Identities = 24/45 (53%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 40 FRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGK-RGNQSG 83
F R G G GGG GGRGGG GG RG GRGG RG + G
Sbjct: 157 FLPRPPGEKGPPRGGGRGGRGGG--RGGGGRGGGRGGGFRGGRGG 199
>gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 71.2 bits (173), Expect = 1e-12
Identities = 40/58 (68%), Positives = 40/58 (68%), Gaps = 11/58 (18%)
Query: 7 PRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGG--GGGGGGGRGGG 62
PRGGG GGRGG GRGG G G GRGGGFRG GRGGGGGG GG GGG RG G
Sbjct: 168 PRGGGRGGRGG--------GRGGGGRGGGRGGGFRG-GRGGGGGGFRGGRGGGFRGRG 216
Score = 65.5 bits (158), Expect = 6e-11
Identities = 48/122 (39%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 13 GGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGR 72
GGRGGF RGG GGG RGG RGGGGGGGGG G G GGF GG RG
Sbjct: 6 GGRGGFN-------RGGGGGGFNRGGS-SNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGG 57
Query: 73 GRGGKRGNQSGKNVMVEPHRH--EGVFICRGKEDALVTKNLVP--GESVYGEKRVSISEG 128
G+ + V++ H E +C+ D +N VP VY E + I +
Sbjct: 58 FNKGQDQGPPERVVLLGEFLHPCEDDIVCKCTTD----ENKVPYFNAPVYLENKEQIGKV 113
Query: 129 DD 130
D+
Sbjct: 114 DE 115
Score = 59.3 bits (142), Expect = 4e-09
Identities = 32/52 (61%), Positives = 32/52 (61%)
Query: 28 GGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRG 79
G G RG G G RG GRGGGG GGG GGG RGG G GG RG GG RG
Sbjct: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRG 214
Score = 55.5 bits (132), Expect = 6e-08
Identities = 31/45 (68%), Positives = 31/45 (68%), Gaps = 4/45 (8%)
Query: 4 GFSPRGGGFGGRGGFGDRGG--RGGRGGFGGG--RGRGGGFRGRG 44
G RGGG GG G G RGG RGGRGG GGG GRGGGFRGRG
Sbjct: 172 GRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGGGFRGRG 216
Score = 53.5 bits (127), Expect = 2e-07
Identities = 34/58 (58%), Positives = 35/58 (60%), Gaps = 10/58 (17%)
Query: 8 RGGGFGG--RGGFG---DRGG-----RGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGG 55
RGGG GG RGG G +RGG RGG GG GGG RGGG G GRGGG GG G
Sbjct: 4 RGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKG 61
Score = 53.5 bits (127), Expect = 2e-07
Identities = 30/50 (60%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 35 GRGGGFRGRGRGGGGGG-GGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSG 83
G G RG GRGG GGG GGGG GG GGGF G RG G GG RG + G
Sbjct: 163 GEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFR--GGRGGGGGGFRGGRGG 210
Score = 46.2 bits (108), Expect = 4e-05
Identities = 33/61 (54%), Positives = 36/61 (59%), Gaps = 13/61 (21%)
Query: 4 GFSPRGGGFGG--RGGFGD--RGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGR 59
GF+ RGGG GG RGG + RGG GG GG G FRG GRGG G GGG GG +
Sbjct: 10 GFN-RGGGGGGFNRGGSSNHFRGGGGGGGG--------GNFRGGGRGGFGRGGGRGGFNK 60
Query: 60 G 60
G
Sbjct: 61 G 61
Score = 39.7 bits (91), Expect = 0.004
Identities = 24/45 (53%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 40 FRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGK-RGNQSG 83
F R G G GGG GGRGGG GG RG GRGG RG + G
Sbjct: 157 FLPRPPGEKGPPRGGGRGGRGGG--RGGGGRGGGRGGGFRGGRGG 199
>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
sapiens]
Length = 600
Score = 68.9 bits (167), Expect = 6e-12
Identities = 41/79 (51%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 9 GGGFGGRGGFGDRGGRGG--RGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHS 66
GG GGRGG DRGG GG RGG GG RG G RG RGG GGG GG GG G
Sbjct: 513 GGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQ 572
Query: 67 GGNRGRGRGGKRGNQSGKN 85
G R GRGG G++
Sbjct: 573 MGGRRGGRGGPGKMDKGEH 591
Score = 67.0 bits (162), Expect = 2e-11
Identities = 47/99 (47%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 1 MKPGFSPRGGGFGGRGGFGDRGGRGG---RGGFGG-GRGRGGGFRGRGRGGGGGGGGGGG 56
+ P F P GG G G G RGGRGG RGG GG RG GG RG RGG G GG G
Sbjct: 496 LPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFG 555
Query: 57 GGRGGGGFHSGGNRGRGRGGKRGNQSGKNVMVE-PHRHE 94
GGR GG G GG+RG + G M + HR E
Sbjct: 556 GGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQE 594
Score = 45.8 bits (107), Expect = 5e-05
Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 12/159 (7%)
Query: 5 FSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGG---GFRGRGRGGGGGGGGGGGGGRGG 61
+ GGF G G G RG GG RGG G RG GRGG G G GG + G
Sbjct: 222 YGQESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPG 281
Query: 62 GGFHSGGNRGRGRGGKRGNQSGKNVMVEPHRHEGVFICR----GKEDALVTKNLVPGE-- 115
G G + G S + + ++ V + K+ +V N G+
Sbjct: 282 GPMDEGPDLDLGPPVDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPM 341
Query: 116 -SVYGEKRVSISEGDDKIEYRAWNPFRSKLAAAILGGVD 153
+Y +K +GD + Y +P +K A G D
Sbjct: 342 IHIYLDKETGKPKGDATVSYE--DPPTAKAAVEWFDGKD 378
Score = 45.1 bits (105), Expect = 9e-05
Identities = 28/57 (49%), Positives = 28/57 (49%)
Query: 27 RGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSG 83
RGG GRG RG GG GG GG G GG G GG RG G RGN SG
Sbjct: 399 RGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSG 455
Score = 43.5 bits (101), Expect = 3e-04
Identities = 33/79 (41%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 2 KPGFSPRGGGFGGRGGFGD----RGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGG 57
KP + GG R G G RGG GG GG GG GR GG GG GG G
Sbjct: 392 KPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGG------RGGDRGGFPPRG 445
Query: 58 GRGGGGFHSGGNRGRGRGG 76
RG G SGG + R G
Sbjct: 446 PRGSRGNPSGGGNVQHRAG 464
Score = 40.4 bits (93), Expect = 0.002
Identities = 33/77 (42%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 1 MKPGFSPRGG-GFGG--RGGFGDRGGRGGRGGFGGGRG-RGGGFRGRGRGGGGGGGGGGG 56
M+ G PR G G RGG G GG GG G GGRG GGF RG G G GGG
Sbjct: 398 MRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGG 457
Query: 57 GGRGGGGFHSGGNRGRG 73
+ G N G G
Sbjct: 458 NVQHRAGDWQCPNPGCG 474
Score = 32.7 bits (73), Expect = 0.44
Identities = 17/34 (50%), Positives = 17/34 (50%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRG 37
G RGG GGRGG G G RGG GG G
Sbjct: 254 GGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEG 287
Score = 28.5 bits (62), Expect = 8.4
Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGG 38
GF G GGRG G RGG G G GG GG
Sbjct: 250 GFDRGGMSRGGRG--GGRGGMGSAGERGGFNKPGG 282
>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
sapiens]
Length = 655
Score = 68.9 bits (167), Expect = 6e-12
Identities = 41/79 (51%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 9 GGGFGGRGGFGDRGGRGG--RGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHS 66
GG GGRGG DRGG GG RGG GG RG G RG RGG GGG GG GG G
Sbjct: 568 GGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQ 627
Query: 67 GGNRGRGRGGKRGNQSGKN 85
G R GRGG G++
Sbjct: 628 MGGRRGGRGGPGKMDKGEH 646
Score = 67.0 bits (162), Expect = 2e-11
Identities = 47/99 (47%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 1 MKPGFSPRGGGFGGRGGFGDRGGRGG---RGGFGG-GRGRGGGFRGRGRGGGGGGGGGGG 56
+ P F P GG G G G RGGRGG RGG GG RG GG RG RGG G GG G
Sbjct: 551 LPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFG 610
Query: 57 GGRGGGGFHSGGNRGRGRGGKRGNQSGKNVMVE-PHRHE 94
GGR GG G GG+RG + G M + HR E
Sbjct: 611 GGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQE 649
Score = 45.4 bits (106), Expect = 7e-05
Identities = 28/69 (40%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 5 FSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGF 64
+ GGF G G G RG GG RG G RGG GGG GG G G GG
Sbjct: 278 YGQESGGFSGPGENRSMSGPDNRGRGRGGFDRG----GMSRGGRGGGRGGMGAGERGGFN 333
Query: 65 HSGGNRGRG 73
GG G
Sbjct: 334 KPGGPMDEG 342
Score = 45.1 bits (105), Expect = 9e-05
Identities = 28/57 (49%), Positives = 28/57 (49%)
Query: 27 RGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSG 83
RGG GRG RG GG GG GG G GG G GG RG G RGN SG
Sbjct: 454 RGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSG 510
Score = 43.5 bits (101), Expect = 3e-04
Identities = 33/79 (41%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 2 KPGFSPRGGGFGGRGGFGD----RGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGG 57
KP + GG R G G RGG GG GG GG GR GG GG GG G
Sbjct: 447 KPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGG------RGGDRGGFPPRG 500
Query: 58 GRGGGGFHSGGNRGRGRGG 76
RG G SGG + R G
Sbjct: 501 PRGSRGNPSGGGNVQHRAG 519
Score = 40.4 bits (93), Expect = 0.002
Identities = 33/77 (42%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 1 MKPGFSPRGG-GFGG--RGGFGDRGGRGGRGGFGGGRG-RGGGFRGRGRGGGGGGGGGGG 56
M+ G PR G G RGG G GG GG G GGRG GGF RG G G GGG
Sbjct: 453 MRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGG 512
Query: 57 GGRGGGGFHSGGNRGRG 73
+ G N G G
Sbjct: 513 NVQHRAGDWQCPNPGCG 529
Score = 36.2 bits (82), Expect = 0.040
Identities = 22/49 (44%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 38 GGFRGRGRGGGGGGGGGGGGGRGG---GGFHSGGNRGRGRGGKRGNQSG 83
GGF G G G G GRGG GG GG RG GRGG + G
Sbjct: 283 GGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGG-RGGGRGGMGAGERG 330
Score = 34.7 bits (78), Expect = 0.12
Identities = 21/47 (44%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 39 GFRGRGRGGGGGGG------GGGGGGRGGGGFHSGGNRGRGRGGKRG 79
G G+ GG G G G GRG GGF GG GRGG RG
Sbjct: 276 GVYGQESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRG 322
>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
sapiens]
Length = 661
Score = 68.9 bits (167), Expect = 6e-12
Identities = 41/79 (51%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 9 GGGFGGRGGFGDRGGRGG--RGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHS 66
GG GGRGG DRGG GG RGG GG RG G RG RGG GGG GG GG G
Sbjct: 574 GGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQ 633
Query: 67 GGNRGRGRGGKRGNQSGKN 85
G R GRGG G++
Sbjct: 634 MGGRRGGRGGPGKMDKGEH 652
Score = 67.0 bits (162), Expect = 2e-11
Identities = 47/99 (47%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 1 MKPGFSPRGGGFGGRGGFGDRGGRGG---RGGFGG-GRGRGGGFRGRGRGGGGGGGGGGG 56
+ P F P GG G G G RGGRGG RGG GG RG GG RG RGG G GG G
Sbjct: 557 LPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFG 616
Query: 57 GGRGGGGFHSGGNRGRGRGGKRGNQSGKNVMVE-PHRHE 94
GGR GG G GG+RG + G M + HR E
Sbjct: 617 GGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQE 655
Score = 45.4 bits (106), Expect = 7e-05
Identities = 28/69 (40%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 5 FSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGF 64
+ GGF G G G RG GG RG G RGG GGG GG G G GG
Sbjct: 284 YGQESGGFSGPGENRSMSGPDNRGRGRGGFDRG----GMSRGGRGGGRGGMGAGERGGFN 339
Query: 65 HSGGNRGRG 73
GG G
Sbjct: 340 KPGGPMDEG 348
Score = 45.1 bits (105), Expect = 9e-05
Identities = 28/57 (49%), Positives = 28/57 (49%)
Query: 27 RGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSG 83
RGG GRG RG GG GG GG G GG G GG RG G RGN SG
Sbjct: 460 RGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSG 516
Score = 43.5 bits (101), Expect = 3e-04
Identities = 33/79 (41%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 2 KPGFSPRGGGFGGRGGFGD----RGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGG 57
KP + GG R G G RGG GG GG GG GR GG GG GG G
Sbjct: 453 KPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGG------RGGDRGGFPPRG 506
Query: 58 GRGGGGFHSGGNRGRGRGG 76
RG G SGG + R G
Sbjct: 507 PRGSRGNPSGGGNVQHRAG 525
Score = 40.4 bits (93), Expect = 0.002
Identities = 33/77 (42%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 1 MKPGFSPRGG-GFGG--RGGFGDRGGRGGRGGFGGGRG-RGGGFRGRGRGGGGGGGGGGG 56
M+ G PR G G RGG G GG GG G GGRG GGF RG G G GGG
Sbjct: 459 MRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGG 518
Query: 57 GGRGGGGFHSGGNRGRG 73
+ G N G G
Sbjct: 519 NVQHRAGDWQCPNPGCG 535
Score = 36.2 bits (82), Expect = 0.040
Identities = 22/49 (44%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 38 GGFRGRGRGGGGGGGGGGGGGRGG---GGFHSGGNRGRGRGGKRGNQSG 83
GGF G G G G GRGG GG GG RG GRGG + G
Sbjct: 289 GGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGG-RGGGRGGMGAGERG 336
Score = 34.7 bits (78), Expect = 0.12
Identities = 21/47 (44%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 39 GFRGRGRGGGGGGG------GGGGGGRGGGGFHSGGNRGRGRGGKRG 79
G G+ GG G G G GRG GGF GG GRGG RG
Sbjct: 282 GVYGQESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRG 328
>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
sapiens]
Length = 656
Score = 68.9 bits (167), Expect = 6e-12
Identities = 41/79 (51%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 9 GGGFGGRGGFGDRGGRGG--RGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHS 66
GG GGRGG DRGG GG RGG GG RG G RG RGG GGG GG GG G
Sbjct: 569 GGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQ 628
Query: 67 GGNRGRGRGGKRGNQSGKN 85
G R GRGG G++
Sbjct: 629 MGGRRGGRGGPGKMDKGEH 647
Score = 67.0 bits (162), Expect = 2e-11
Identities = 47/99 (47%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 1 MKPGFSPRGGGFGGRGGFGDRGGRGG---RGGFGG-GRGRGGGFRGRGRGGGGGGGGGGG 56
+ P F P GG G G G RGGRGG RGG GG RG GG RG RGG G GG G
Sbjct: 552 LPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFG 611
Query: 57 GGRGGGGFHSGGNRGRGRGGKRGNQSGKNVMVE-PHRHE 94
GGR GG G GG+RG + G M + HR E
Sbjct: 612 GGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQE 650
Score = 45.8 bits (107), Expect = 5e-05
Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 12/159 (7%)
Query: 5 FSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGG---GFRGRGRGGGGGGGGGGGGGRGG 61
+ GGF G G G RG GG RGG G RG GRGG G G GG + G
Sbjct: 278 YGQESGGFSGPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPG 337
Query: 62 GGFHSGGNRGRGRGGKRGNQSGKNVMVEPHRHEGVFICR----GKEDALVTKNLVPGE-- 115
G G + G S + + ++ V + K+ +V N G+
Sbjct: 338 GPMDEGPDLDLGPPVDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPM 397
Query: 116 -SVYGEKRVSISEGDDKIEYRAWNPFRSKLAAAILGGVD 153
+Y +K +GD + Y +P +K A G D
Sbjct: 398 IHIYLDKETGKPKGDATVSYE--DPPTAKAAVEWFDGKD 434
Score = 45.1 bits (105), Expect = 9e-05
Identities = 28/57 (49%), Positives = 28/57 (49%)
Query: 27 RGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSG 83
RGG GRG RG GG GG GG G GG G GG RG G RGN SG
Sbjct: 455 RGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSG 511
Score = 43.5 bits (101), Expect = 3e-04
Identities = 33/79 (41%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 2 KPGFSPRGGGFGGRGGFGD----RGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGG 57
KP + GG R G G RGG GG GG GG GR GG GG GG G
Sbjct: 448 KPPMNSMRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGG------RGGDRGGFPPRG 501
Query: 58 GRGGGGFHSGGNRGRGRGG 76
RG G SGG + R G
Sbjct: 502 PRGSRGNPSGGGNVQHRAG 520
Score = 40.4 bits (93), Expect = 0.002
Identities = 33/77 (42%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 1 MKPGFSPRGG-GFGG--RGGFGDRGGRGGRGGFGGGRG-RGGGFRGRGRGGGGGGGGGGG 56
M+ G PR G G RGG G GG GG G GGRG GGF RG G G GGG
Sbjct: 454 MRGGLPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGG 513
Query: 57 GGRGGGGFHSGGNRGRG 73
+ G N G G
Sbjct: 514 NVQHRAGDWQCPNPGCG 530
Score = 32.7 bits (73), Expect = 0.44
Identities = 17/34 (50%), Positives = 17/34 (50%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRG 37
G RGG GGRGG G G RGG GG G
Sbjct: 310 GGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEG 343
Score = 28.5 bits (62), Expect = 8.4
Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGG 38
GF G GGRG G RGG G G GG GG
Sbjct: 306 GFDRGGMSRGGRG--GGRGGMGSAGERGGFNKPGG 338
>gi|56699482 hypothetical protein LOC25940 [Homo sapiens]
Length = 518
Score = 68.9 bits (167), Expect = 6e-12
Identities = 44/96 (45%), Positives = 52/96 (54%), Gaps = 21/96 (21%)
Query: 8 RGGG--------FGGRGGFGDRGGRGGRGGFG-GGRGRGGGFRGRGRGGGGGGGGGGGGG 58
RGGG +GGRGG GGRGGRGG+ GGRG G G + +G GG GGGGG
Sbjct: 336 RGGGRGGYEHSSYGGRGGHEQGGGRGGRGGYDHGGRGGGRGNKHQGGWTDGGSGGGGGYQ 395
Query: 59 RGG--------GGFH----SGGNRGRGRGGKRGNQS 82
GG GG+H SGG +G G GG + + S
Sbjct: 396 DGGYRDSGFQPGGYHGGHSSGGYQGGGYGGFQTSSS 431
Score = 58.2 bits (139), Expect = 1e-08
Identities = 35/82 (42%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGG 63
G +GGG+ + D G G RGG GGRG GRG GG G GGG GGRG
Sbjct: 434 GSGYQGGGYQQDNRYQDGGHHGDRGGGRGGRG------GRGGRGGRAGQGGGWGGRGSQN 487
Query: 64 FHSGG--NRGRGRGGKRGNQSG 83
+H GG + GG + N SG
Sbjct: 488 YHQGGQFEQHFQHGGYQYNHSG 509
Score = 55.1 bits (131), Expect = 8e-08
Identities = 36/91 (39%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 4 GFSPRG-------GGF--GGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGG 54
GF P G GG+ GG GGF G G GGG + ++ G G GGG G
Sbjct: 403 GFQPGGYHGGHSSGGYQGGGYGGFQTSSSYTGSGYQGGGYQQDNRYQDGGHHGDRGGGRG 462
Query: 55 GGGGRGGGGFHSG-GNRGRGRGGKRGNQSGK 84
G GGRGG G +G G GRG + +Q G+
Sbjct: 463 GRGGRGGRGGRAGQGGGWGGRGSQNYHQGGQ 493
Score = 54.7 bits (130), Expect = 1e-07
Identities = 39/88 (44%), Positives = 42/88 (47%), Gaps = 21/88 (23%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGG-GGGGGGGG-----------G 56
GG GGRGG+ + GGRGG G GRGG RGG GG GGG G
Sbjct: 334 GGRGGGRGGY-EHSSYGGRGGHEQGGGRGG------RGGYDHGGRGGGRGNKHQGGWTDG 386
Query: 57 GGRGGGGFHSGGNRGRG--RGGKRGNQS 82
G GGGG+ GG R G GG G S
Sbjct: 387 GSGGGGGYQDGGYRDSGFQPGGYHGGHS 414
Score = 53.1 bits (126), Expect = 3e-07
Identities = 34/65 (52%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 22 GGRGG-RGGFGGGR--GRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKR 78
GGRGG RGG+ GRGG +G GRGG GG GG GG G G H GG G GG
Sbjct: 334 GGRGGGRGGYEHSSYGGRGGHEQGGGRGGRGGYDHGGRGG-GRGNKHQGGWTDGGSGGGG 392
Query: 79 GNQSG 83
G Q G
Sbjct: 393 GYQDG 397
Score = 52.4 bits (124), Expect = 5e-07
Identities = 31/66 (46%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGG 68
GG G RGG RGGRGGRGG GG G+GGG+ GRG GG + GG ++
Sbjct: 451 GGHHGDRGG--GRGGRGGRGGRGGRAGQGGGWGGRGSQNYHQGGQFEQHFQHGGYQYNHS 508
Query: 69 NRGRGR 74
G+GR
Sbjct: 509 GFGQGR 514
Score = 52.0 bits (123), Expect = 7e-07
Identities = 40/107 (37%), Positives = 47/107 (43%), Gaps = 22/107 (20%)
Query: 10 GGFGGRGGFGDRGGRGGR---GGFGGGRGRGGGFRGRGRGG--------GGGGGGGG--- 55
GG GG GG+ D G R GG+ GG GG++G G GG G G GGG
Sbjct: 386 GGSGGGGGYQDGGYRDSGFQPGGYHGGHS-SGGYQGGGYGGFQTSSSYTGSGYQGGGYQQ 444
Query: 56 ------GGGRGGGGFHSGGNRGR-GRGGKRGNQSGKNVMVEPHRHEG 95
GG G G GG GR GRGG+ G G + H+G
Sbjct: 445 DNRYQDGGHHGDRGGGRGGRGGRGGRGGRAGQGGGWGGRGSQNYHQG 491
Score = 35.4 bits (80), Expect = 0.068
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 48 GGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSGKNVMVEPHRHEG 95
GG GGG GG G G +G GRGG+ G G ++H+G
Sbjct: 334 GGRGGGRGGYEHSSYGGRGGHEQGGGRGGRGGYDHGGRGGGRGNKHQG 381
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 67.4 bits (163), Expect = 2e-11
Identities = 35/68 (51%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 26 GRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSGKN 85
G GG G G GG G G GGG GGGGG GGG GGGG GG G G GG G G +
Sbjct: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGG---GGGPGGGGGGPGGGLLGGS 186
Query: 86 VMVEPHRH 93
PH H
Sbjct: 187 AHPHPHMH 194
Score = 64.7 bits (156), Expect = 1e-10
Identities = 33/57 (57%), Positives = 33/57 (57%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFH 65
GG GG G G GG GG GGG G GGG G G GG GGGGGG GGG GG H
Sbjct: 132 GGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSAH 188
Score = 57.0 bits (136), Expect = 2e-08
Identities = 30/55 (54%), Positives = 30/55 (54%)
Query: 17 GFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRG 71
G G G G GG G G GGG G G GGG GGGGGGG GGGG GG G
Sbjct: 130 GAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLG 184
Score = 56.2 bits (134), Expect = 4e-08
Identities = 36/66 (54%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 6 SPRGGGFGGRGGFGDRGGRGG-RGGFGGGRGRGGGFRGRGRGGGGGGGGG-GGGGRGGGG 63
SP G GG G G GG G GGG G GGG G G G GGGGGGG GGGG G GG
Sbjct: 122 SPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGG-GGPGGGPGGGGGGGPGGGGGGPGG 180
Query: 64 FHSGGN 69
GG+
Sbjct: 181 GLLGGS 186
Score = 36.2 bits (82), Expect = 0.040
Identities = 19/35 (54%), Positives = 19/35 (54%)
Query: 3 PGFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRG 37
PG GG GG GG GG GG GG GGG G G
Sbjct: 147 PGGGGGPGGGGGPGGGPGGGGGGGPGGGGGGPGGG 181
Score = 31.2 bits (69), Expect = 1.3
Identities = 17/31 (54%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 3 PGFSPRGGGFGGRGGFGDRGGRGGRGGFGGG 33
PG P GGG GG GG GG G GG GG
Sbjct: 159 PGGGPGGGGGGGPGG----GGGGPGGGLLGG 185
>gi|194018511 keratin 77 [Homo sapiens]
Length = 578
Score = 66.6 bits (161), Expect = 3e-11
Identities = 35/62 (56%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 10 GGFGGRGGFGDRG-GRGGRGGFGGGRG-RGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSG 67
GG GG G +G G G G GG+GGGR RGGG RGR GG G G GGGGG GG G
Sbjct: 498 GGAGGGGSYGSGGYGGGSGGGYGGGRSYRGGGARGRSGGGYGSGCGGGGGSYGGSGRSGR 557
Query: 68 GN 69
G+
Sbjct: 558 GS 559
Score = 62.8 bits (151), Expect = 4e-10
Identities = 31/61 (50%), Positives = 33/61 (54%)
Query: 13 GGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGR 72
GG GG G G G GG GGG G G +RG G G GGG G G G GGG + G GR
Sbjct: 498 GGAGGGGSYGSGGYGGGSGGGYGGGRSYRGGGARGRSGGGYGSGCGGGGGSYGGSGRSGR 557
Query: 73 G 73
G
Sbjct: 558 G 558
Score = 54.7 bits (130), Expect = 1e-07
Identities = 31/64 (48%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 22 GGRGGRGGFGG---GRGRGGGFRG----RGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGR 74
GG GG G +G G G GGG+ G RG G G GGG G G GGGG GG+ GR
Sbjct: 498 GGAGGGGSYGSGGYGGGSGGGYGGGRSYRGGGARGRSGGGYGSGCGGGGGSYGGSGRSGR 557
Query: 75 GGKR 78
G R
Sbjct: 558 GSSR 561
Score = 52.8 bits (125), Expect = 4e-07
Identities = 31/61 (50%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 28 GGFGGGRGRGGGFRGRGRGGGGGGG----GGGGGGRGGGGFHSGGNRGRGRGGKRGNQSG 83
GG GGG G G G G GGG GGG GGG GR GGG+ SG G G G G +SG
Sbjct: 498 GGAGGGGSYGSGGYGGGSGGGYGGGRSYRGGGARGRSGGGYGSGCGGGGGSYGGSG-RSG 556
Query: 84 K 84
+
Sbjct: 557 R 557
Score = 52.0 bits (123), Expect = 7e-07
Identities = 34/82 (41%), Positives = 36/82 (43%), Gaps = 20/82 (24%)
Query: 4 GFSPRGGGFGGRGGFGDRGGR-----------------GGRGGFGGGRGRGGGFRGRGRG 46
G+ G GFG R + G R GG GGFGGGRG G G G
Sbjct: 48 GYGIHGRGFGSRSLYNLGGSRSISINLMGRSTSGFCQGGGVGGFGGGRGFGVGSTG---A 104
Query: 47 GGGGGGGGGGGGRGGGGFHSGG 68
GG GGGG GG G G F GG
Sbjct: 105 GGFGGGGFGGAGFGTSNFGLGG 126
Score = 48.9 bits (115), Expect = 6e-06
Identities = 33/73 (45%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 9 GGGFGGRG-GFGDRG--GRGGRGGFG---GGRGRGGGFRGRGRGGGGGGGGGGGGGRGGG 62
GGG+G G GFG R GG GR G +G G GG GGG G G G G G
Sbjct: 46 GGGYGIHGRGFGSRSLYNLGGSRSISINLMGRSTSGFCQGGGVGGFGGGRGFGVGSTGAG 105
Query: 63 GFHSGGNRGRGRG 75
GF GG G G G
Sbjct: 106 GFGGGGFGGAGFG 118
Score = 47.8 bits (112), Expect = 1e-05
Identities = 30/62 (48%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 4 GFSPRGGGFGGRGGFGDRGGR-----GGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGG 58
G S GG+GG G G GGR G RG GGG G G G GGGG GG G G
Sbjct: 503 GGSYGSGGYGGGSGGGYGGGRSYRGGGARGRSGGGYGSGCG------GGGGSYGGSGRSG 556
Query: 59 RG 60
RG
Sbjct: 557 RG 558
Score = 40.4 bits (93), Expect = 0.002
Identities = 28/55 (50%), Positives = 28/55 (50%), Gaps = 9/55 (16%)
Query: 4 GFSPRGG--GFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGG 56
GF GG GFGG GFG G G GGFGGG GF G G G G GG G
Sbjct: 81 GFCQGGGVGGFGGGRGFGV--GSTGAGGFGGG-----GFGGAGFGTSNFGLGGFG 128
Score = 38.5 bits (88), Expect = 0.008
Identities = 34/82 (41%), Positives = 35/82 (42%), Gaps = 14/82 (17%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFG-GGRGRG-------GGFRG-----RGRGGGGGGGGGG 55
GGG G GR G GG+G GRG G GG R GR G GGG
Sbjct: 28 GGGSPAVGSVCYARGRCGGGGYGIHGRGFGSRSLYNLGGSRSISINLMGRSTSGFCQGGG 87
Query: 56 GGGRGGG-GFHSGGNRGRGRGG 76
GG GGG GF G G GG
Sbjct: 88 VGGFGGGRGFGVGSTGAGGFGG 109
Score = 30.4 bits (67), Expect = 2.2
Identities = 26/72 (36%), Positives = 26/72 (36%), Gaps = 21/72 (29%)
Query: 28 GGFGGGRGRGGGFRGRGRGGGGGGGGGGGG--------------------GRGGGGFHSG 67
G GG G RGR GGGG G G G GR GF G
Sbjct: 26 GSGGGSPAVGSVCYARGRCGGGGYGIHGRGFGSRSLYNLGGSRSISINLMGRSTSGFCQG 85
Query: 68 GNRGRGRGGKRG 79
G G G GG RG
Sbjct: 86 GGVG-GFGGGRG 96
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 66.6 bits (161), Expect = 3e-11
Identities = 39/82 (47%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 8 RGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSG 67
RGGGFGG FG G GRGGFGG RG GGG+ G G G G G G G GGG ++
Sbjct: 206 RGGGFGGNDNFGRGGNFSGRGGFGGSRG-GGGYGGSGDGYNGFGNDGSNFG-GGGSYNDF 263
Query: 68 GNR-------GRGRGGKRGNQS 82
GN G +GG G +S
Sbjct: 264 GNYNNQSSNFGPMKGGNFGGRS 285
Score = 60.5 bits (145), Expect = 2e-09
Identities = 32/62 (51%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 23 GRGGRGGFGGGRGRG-GGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQ 81
GR G G FGGGRG G GG GRGG G GG GG RGGGG+ G+ G G N
Sbjct: 195 GRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNF 254
Query: 82 SG 83
G
Sbjct: 255 GG 256
Score = 60.1 bits (144), Expect = 3e-09
Identities = 37/68 (54%), Positives = 39/68 (57%), Gaps = 8/68 (11%)
Query: 11 GFGGRGGFGDRGGRGGRGGFGGGR--GRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGG 68
G G G FG GGRGG GFGG GRGG F GRG G GG GGGG G G G++ G
Sbjct: 195 GRSGSGNFG--GGRGG--GFGGNDNFGRGGNFSGRG--GFGGSRGGGGYGGSGDGYNGFG 248
Query: 69 NRGRGRGG 76
N G GG
Sbjct: 249 NDGSNFGG 256
Score = 50.4 bits (119), Expect = 2e-06
Identities = 36/100 (36%), Positives = 42/100 (42%), Gaps = 26/100 (26%)
Query: 8 RGGGFGGRGGFG-DRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGG-------------- 52
RGG F GRGGFG RGG G+GG GF G GGGG
Sbjct: 218 RGGNFSGRGGFGGSRGGG----GYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNF 273
Query: 53 ----GGGGGGRGGGGFHSGGN---RGRGRGGKRGNQSGKN 85
GG GGR G + GG + R +GG G+ S +
Sbjct: 274 GPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSS 313
Score = 45.4 bits (106), Expect = 7e-05
Identities = 34/87 (39%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 4 GFSPRGGGFGGRG----GFGDRGGRGGRGG----FGGGRGRGGGFRGRGRGGGGGGGGGG 55
G S GGG+GG G GFG+ G G GG FG + F G +GG GG G
Sbjct: 229 GGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNF-GPMKGGNFGGRSSG 287
Query: 56 GGGRGGGGFHSGGNRGRGRGGKRGNQS 82
G GG F N+G G GG + S
Sbjct: 288 PYGGGGQYFAKPRNQG-GYGGSSSSSS 313
Score = 41.2 bits (95), Expect = 0.001
Identities = 20/41 (48%), Positives = 22/41 (53%)
Query: 43 RGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSG 83
RGR G G GGG GGG GG G GRGG G++ G
Sbjct: 194 RGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGG 234
>gi|153791670 keratin 76 [Homo sapiens]
Length = 638
Score = 66.2 bits (160), Expect = 4e-11
Identities = 44/83 (53%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 6 SPRGGGFGG-------RGGFGDRGGRGGR--GGFGGGRGRGGGFRGRGRGGGGGGGGGGG 56
S R GGFGG GG+G GG GG GGFGGGRG G GF G G GG GG GG G
Sbjct: 75 SSRAGGFGGGRSSCGFAGGYG--GGFGGSYGGGFGGGRGVGSGFGGAGGFGGAGGFGGPG 132
Query: 57 GGRGGGGFHSGGNRGRGRGGKRG 79
G G F GG G G GG G
Sbjct: 133 VFGGPGSF--GGPGGFGPGGFPG 153
Score = 57.8 bits (138), Expect = 1e-08
Identities = 35/61 (57%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFG--GGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHS 66
GGGFGG G G GGRG GFG GG G GGF G G GG G GG GG G GGF
Sbjct: 95 GGGFGGSYGGGFGGGRGVGSGFGGAGGFGGAGGFGGPG-VFGGPGSFGGPGGFGPGGFPG 153
Query: 67 G 67
G
Sbjct: 154 G 154
Score = 53.5 bits (127), Expect = 2e-07
Identities = 37/87 (42%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 4 GFSPRGGGFGGRG----------GFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGG 53
GF G FG R G GGFGGGR G G G G GG GG
Sbjct: 45 GFRSGAGSFGSRSLYNLGSNKSISISVAAGSSRAGGFGGGRSSCGFAGGYGGGFGGSYGG 104
Query: 54 GGGGGRG-GGGFHSGGNRGRGRGGKRG 79
G GGGRG G GF G G G GG G
Sbjct: 105 GFGGGRGVGSGFGGAGGFG-GAGGFGG 130
Score = 49.7 bits (117), Expect = 4e-06
Identities = 41/115 (35%), Positives = 41/115 (35%), Gaps = 37/115 (32%)
Query: 2 KPGFSPRGGGFGGR------------------GGFGDRGGRGGRGGFG------------ 31
K FS R GF GR G G G R G G FG
Sbjct: 7 KKSFSGRSQGFSGRSAVVSGSSRMSCVARSGGAGGGACGFRSGAGSFGSRSLYNLGSNKS 66
Query: 32 ------GGRGRGGGF-RGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRG 79
G R GGF GR G GG GGG GG GGGF G G G GG G
Sbjct: 67 ISISVAAGSSRAGGFGGGRSSCGFAGGYGGGFGGSYGGGFGGGRGVGSGFGGAGG 121
Score = 42.7 bits (99), Expect = 4e-04
Identities = 25/58 (43%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 27 RGGFGGGRGRG-GGFRGRGRGGGGGGGG-GGGGGRGGGGFHSGGNRGRGRGGKRGNQS 82
RG FGG G G GG++G G G GG G G GG SG GRG G + S
Sbjct: 523 RGVFGGVSGSGSGGYKGGSSSSSSSGYGVSGGSGSGYGGVSSGSTGGRGSSGSYQSSS 580
Score = 41.6 bits (96), Expect = 0.001
Identities = 23/68 (33%), Positives = 26/68 (38%)
Query: 9 GGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGG 68
G G GG G G +GG G G G G GG G GGRG G +
Sbjct: 520 GSSRGVFGGVSGSGSGGYKGGSSSSSSSGYGVSGGSGSGYGGVSSGSTGGRGSSGSYQSS 579
Query: 69 NRGRGRGG 76
+ G GG
Sbjct: 580 SSGSRLGG 587
Score = 40.8 bits (94), Expect = 0.002
Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 10 GGFGGRGGFGDRGGRGG-RGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGG 68
G FGG G G G +GG G G GG G G GG G GG G G S G
Sbjct: 524 GVFGGVSGSGSGGYKGGSSSSSSSGYGVSGG-SGSGYGGVSSGSTGGRGSSGSYQSSSSG 582
Query: 69 NRGRGRGGKRGNQSG 83
+R G G + SG
Sbjct: 583 SRLGGAGSISVSHSG 597
Score = 38.5 bits (88), Expect = 0.008
Identities = 33/87 (37%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 8 RGGGFGGRGGFGDRGGRGGRGGFGG------GRGRGGGFRGRGRGGGGGGGGGGGGGRG- 60
R GG GG G G R G G FG G + GG GGG G
Sbjct: 35 RSGGAGG----GACGFRSGAGSFGSRSLYNLGSNKSISISVAAGSSRAGGFGGGRSSCGF 90
Query: 61 ----GGGFHSGGNRGRGRGGKRGNQSG 83
GGGF GG+ G G GG RG SG
Sbjct: 91 AGGYGGGF--GGSYGGGFGGGRGVGSG 115
Score = 38.5 bits (88), Expect = 0.008
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 6 SPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFH 65
S G+G GG G G G G GGRG G ++ G GG G G G
Sbjct: 543 SSSSSGYGVSGGSGSGYG-GVSSGSTGGRGSSGSYQSSSSGSRLGGAGSISVSHSGMGSS 601
Query: 66 SGGNRGRGRGGKRGNQSG 83
SG + G G + G
Sbjct: 602 SGSIQTSGGSGYKSGGGG 619
Score = 37.7 bits (86), Expect = 0.014
Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGG------GGGGGGGGGG 57
G+ GG G GG G GGRG G + G R G G G G G
Sbjct: 548 GYGVSGGSGSGYGGVSS-GSTGGRGSSGSYQSSSSGSRLGGAGSISVSHSGMGSSSGSIQ 606
Query: 58 GRGGGGFHSGG 68
GG G+ SGG
Sbjct: 607 TSGGSGYKSGG 617
>gi|4502565 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 66.2 bits (160), Expect = 4e-11
Identities = 32/47 (68%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 19 GDRGGRGGRGGFGGGRGR--GGGFRGRGRGGGGGGGGGGGGGRGGGG 63
G GG GG GG GGG G GG G G GGGGGGGGGGGGG GGGG
Sbjct: 10 GGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGG 56
Score = 59.3 bits (142), Expect = 4e-09
Identities = 32/56 (57%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 24 RGGRGGFGGGRGRGGGFRGRGRG---GGGGGGGGGGGGRGGGGFHSGGNRGRGRGG 76
+GG GG GGG G GGG G G GGGGGGGGGG GGGG GG R GG
Sbjct: 9 KGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMRILGG 64
Score = 58.5 bits (140), Expect = 8e-09
Identities = 32/52 (61%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 8 RGGGFGGRGGFGDRGGRGG-RGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGG 58
+GGG GG GG G GG G GG G G GGG G GGGGGGGGGGGGG
Sbjct: 9 KGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGG----GGGGGGGGGGGGGGG 56
Score = 44.7 bits (104), Expect = 1e-04
Identities = 23/43 (53%), Positives = 24/43 (55%)
Query: 41 RGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSG 83
+G G GGGGGGG GGG G GG SG G G GG G G
Sbjct: 9 KGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGG 51
Score = 43.9 bits (102), Expect = 2e-04
Identities = 24/48 (50%), Positives = 25/48 (52%), Gaps = 11/48 (22%)
Query: 43 RGRGGGGGGGGGGGGG-----------RGGGGFHSGGNRGRGRGGKRG 79
+G GGGGGGGGG GGG GGGG GG G G GG G
Sbjct: 9 KGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGG 56
>gi|51599151 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 66.2 bits (160), Expect = 4e-11
Identities = 32/47 (68%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 19 GDRGGRGGRGGFGGGRGR--GGGFRGRGRGGGGGGGGGGGGGRGGGG 63
G GG GG GG GGG G GG G G GGGGGGGGGGGGG GGGG
Sbjct: 10 GGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGG 56
Score = 59.3 bits (142), Expect = 4e-09
Identities = 32/56 (57%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 24 RGGRGGFGGGRGRGGGFRGRGRG---GGGGGGGGGGGGRGGGGFHSGGNRGRGRGG 76
+GG GG GGG G GGG G G GGGGGGGGGG GGGG GG R GG
Sbjct: 9 KGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMRILGG 64
Score = 58.5 bits (140), Expect = 8e-09
Identities = 32/52 (61%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 8 RGGGFGGRGGFGDRGGRGG-RGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGG 58
+GGG GG GG G GG G GG G G GGG G GGGGGGGGGGGGG
Sbjct: 9 KGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGG----GGGGGGGGGGGGGGG 56
Score = 44.7 bits (104), Expect = 1e-04
Identities = 23/43 (53%), Positives = 24/43 (55%)
Query: 41 RGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQSG 83
+G G GGGGGGG GGG G GG SG G G GG G G
Sbjct: 9 KGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGG 51
Score = 43.9 bits (102), Expect = 2e-04
Identities = 24/48 (50%), Positives = 25/48 (52%), Gaps = 11/48 (22%)
Query: 43 RGRGGGGGGGGGGGGG-----------RGGGGFHSGGNRGRGRGGKRG 79
+G GGGGGGGGG GGG GGGG GG G G GG G
Sbjct: 9 KGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGG 56
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 66.2 bits (160), Expect = 4e-11
Identities = 37/80 (46%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 7 PRGGGFGGRGGFGDRGGRGGRGGFGGGRGR---------GGGFRGRGRGGGGGGGG-GGG 56
P+ + G GG G R RGGRGG G G GR GGG+ G GGGGGGG
Sbjct: 175 PKEDIYSGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAY 234
Query: 57 GGRGGGGFHSGGNRGRGRGG 76
GG GGG + G + G G GG
Sbjct: 235 GGGGGGSSYGGSDYGNGFGG 254
Score = 59.3 bits (142), Expect = 4e-09
Identities = 41/92 (44%), Positives = 44/92 (47%), Gaps = 19/92 (20%)
Query: 9 GGGFGGRGGFGDRGGRGGR---GGFGGGRGRGGGFRGRGRGGGG--------------GG 51
GGG+ GG+G GG GG GG GGG GG G G GG G GG
Sbjct: 214 GGGYNSYGGYGGGGG-GGYNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGG 272
Query: 52 GGGGGGGRGGGGFHSGGNR-GRGRGGKRGNQS 82
GGGGGG GG +SG R G G GG G S
Sbjct: 273 GGGGGGSSWGGRSNSGPYRGGYGGGGGYGGSS 304
Score = 53.5 bits (127), Expect = 2e-07
Identities = 41/100 (41%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 10 GGFGGRGGFGDR-------GGRGGRGGFGG-GRGRGGGFRGRGRGGGGGGG-GGGGGGRG 60
GG GGRG G R GG GG +GG G G GGG+ G GGGGG GG G G
Sbjct: 193 GGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYG-GGGGGSSYGGSDYGNG 251
Query: 61 GGGFHS--------GGNRGRGRGGKRGNQSGKNVMVEPHR 92
GGF S G + G GG G+ G P+R
Sbjct: 252 FGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYR 291
Score = 52.0 bits (123), Expect = 7e-07
Identities = 29/73 (39%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 4 GFSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGG 63
G++ GGG GG +G G GGFG + GGGGGGGG GGR G
Sbjct: 230 GYNAYGGG-GGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSG 288
Query: 64 FHSGGNRGRGRGG 76
+ GG G G G
Sbjct: 289 PYRGGYGGGGGYG 301
Score = 37.7 bits (86), Expect = 0.014
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 5 FSPRGGGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRG 42
+ P G GG GG GGR G + GG G GGG+ G
Sbjct: 265 YGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGYGG 302
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.142 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,752,151
Number of Sequences: 37866
Number of extensions: 908645
Number of successful extensions: 42263
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 298
Number of HSP's that attempted gapping in prelim test: 10109
Number of HSP's gapped (non-prelim): 12960
length of query: 321
length of database: 18,247,518
effective HSP length: 102
effective length of query: 219
effective length of database: 14,385,186
effective search space: 3150355734
effective search space used: 3150355734
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.