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Search of human proteins with 12025680
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|12025680 zygin 1 isoform 2 [Homo sapiens]
(104 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4826724 zygin 1 isoform 1 [Homo sapiens] 214 1e-56
gi|12025680 zygin 1 isoform 2 [Homo sapiens] 214 1e-56
gi|48255883 troponin T type 2, cardiac isoform 4 [Homo sapiens] 32 0.082
gi|48255881 troponin T type 2, cardiac isoform 3 [Homo sapiens] 32 0.082
gi|48255879 troponin T type 2, cardiac isoform 2 [Homo sapiens] 32 0.082
gi|48255877 troponin T type 2, cardiac isoform 1 [Homo sapiens] 32 0.082
gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens] 32 0.11
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens] 32 0.11
gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens] 30 0.31
gi|216547519 interleukin-1 receptor-associated kinase 3 isoform ... 30 0.41
gi|216547504 interleukin-1 receptor-associated kinase 3 isoform ... 30 0.41
gi|225735631 mesoderm induction early response 1 isoform g [Homo... 30 0.53
gi|225735617 mesoderm induction early response 1 isoform h [Homo... 30 0.53
gi|225735615 mesoderm induction early response 1 isoform a [Homo... 30 0.53
gi|118130872 mesoderm induction early response 1 isoform f [Homo... 30 0.53
gi|225735612 mesoderm induction early response 1 isoform e [Homo... 30 0.53
gi|225735610 mesoderm induction early response 1 isoform d [Homo... 30 0.53
gi|118130815 mesoderm induction early response 1 isoform c [Homo... 30 0.53
gi|225735607 mesoderm induction early response 1 isoform b [Homo... 30 0.53
gi|225735605 mesoderm induction early response 1 isoform a [Homo... 30 0.53
gi|118498352 M-phase phosphoprotein 6 [Homo sapiens] 30 0.53
gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo ... 29 0.69
gi|66529396 paraoxonase 2 isoform 2 [Homo sapiens] 29 0.91
gi|66529294 paraoxonase 2 isoform 1 [Homo sapiens] 29 0.91
gi|7662126 signal-induced proliferation-associated 1 like 1 [Hom... 29 0.91
gi|4504789 1D-myo-inositol-trisphosphate 3-kinase A [Homo sapiens] 29 0.91
gi|189011568 adenomatous polyposis coli [Homo sapiens] 28 1.2
gi|189011566 adenomatous polyposis coli [Homo sapiens] 28 1.2
gi|53759122 adenomatous polyposis coli [Homo sapiens] 28 1.2
gi|222537743 protein tyrosine phosphatase, receptor type, Q [Hom... 28 1.2
>gi|4826724 zygin 1 isoform 1 [Homo sapiens]
Length = 392
Score = 214 bits (545), Expect = 1e-56
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MEAPLVSLDEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSME 60
MEAPLVSLDEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSME
Sbjct: 1 MEAPLVSLDEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSME 60
Query: 61 DLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQDEE 104
DLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQDEE
Sbjct: 61 DLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQDEE 104
>gi|12025680 zygin 1 isoform 2 [Homo sapiens]
Length = 104
Score = 214 bits (545), Expect = 1e-56
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MEAPLVSLDEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSME 60
MEAPLVSLDEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSME
Sbjct: 1 MEAPLVSLDEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSME 60
Query: 61 DLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQDEE 104
DLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQDEE
Sbjct: 61 DLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQDEE 104
>gi|48255883 troponin T type 2, cardiac isoform 4 [Homo sapiens]
Length = 282
Score = 32.3 bits (72), Expect = 0.082
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 9 DEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSMEDLVNEFDE 68
+EE ++ E+ + KP+ F + L P + + E + I K ME +NE
Sbjct: 44 EEEAKEAEDGPMEESKPKPRSFMPN----LVPPKIPDGERVDFDDIHRKRMEKDLNELQA 99
Query: 69 KLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQ 101
+ F N + E L +K++++ + E Q
Sbjct: 100 LIEAHFENRKKEEEELVSLKDRIERRRAERAEQ 132
>gi|48255881 troponin T type 2, cardiac isoform 3 [Homo sapiens]
Length = 285
Score = 32.3 bits (72), Expect = 0.082
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 9 DEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSMEDLVNEFDE 68
+EE ++ E+ + KP+ F + L P + + E + I K ME +NE
Sbjct: 49 EEEAKEAEDGPMEESKPKPRSFMPN----LVPPKIPDGERVDFDDIHRKRMEKDLNELQA 104
Query: 69 KLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQ 101
+ F N + E L +K++++ + E Q
Sbjct: 105 LIEAHFENRKKEEEELVSLKDRIERRRAERAEQ 137
>gi|48255879 troponin T type 2, cardiac isoform 2 [Homo sapiens]
Length = 288
Score = 32.3 bits (72), Expect = 0.082
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 9 DEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSMEDLVNEFDE 68
+EE ++ E+ + KP+ F + L P + + E + I K ME +NE
Sbjct: 49 EEEAKEAEDGPMEESKPKPRSFMPN----LVPPKIPDGERVDFDDIHRKRMEKDLNELQA 104
Query: 69 KLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQ 101
+ F N + E L +K++++ + E Q
Sbjct: 105 LIEAHFENRKKEEEELVSLKDRIERRRAERAEQ 137
>gi|48255877 troponin T type 2, cardiac isoform 1 [Homo sapiens]
Length = 295
Score = 32.3 bits (72), Expect = 0.082
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 9 DEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSMEDLVNEFDE 68
+EE ++ E+ + KP+ F + L P + + E + I K ME +NE
Sbjct: 59 EEEAKEAEDGPMEESKPKPRSFMPN----LVPPKIPDGERVDFDDIHRKRMEKDLNELQA 114
Query: 69 KLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQ 101
+ F N + E L +K++++ + E Q
Sbjct: 115 LIEAHFENRKKEEEELVSLKDRIERRRAERAEQ 147
>gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens]
Length = 1946
Score = 32.0 bits (71), Expect = 0.11
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 1 MEAPLVSLDEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSME 60
+E L DEE E+ R K QC S L+ + S +E + K ME
Sbjct: 1584 LERKLSEKDEEIENFR--------RKQQCTIDSLQSSLDSEAKSRIEVTRLK----KKME 1631
Query: 61 DLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQD 102
+ +NE + +L+ R + T++L + Q+QI++ + L D
Sbjct: 1632 EDLNEMELQLSCANRQVSEATKSLGQL--QIQIKDLQMQLDD 1671
>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
Length = 1780
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 63 VNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEEEETLQDEE 104
+NE ++K N C + + K + +K QL Q+ EE +Q E
Sbjct: 1280 INELEKKKNQCSQELDMKQRTIQQLKEQLNNQKVEEAIQQYE 1321
>gi|134142062 acetyl-Coenzyme A carboxylase beta [Homo sapiens]
Length = 2458
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 40 DPSLSELENFSSEIISFKSMEDLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEEEET 99
D S L +++F+ ED FDE ++ CF N T + + L +++ ++
Sbjct: 1356 DSGFSPLCQRMGAMVAFRRFEDFTRNFDEVIS-CFANVPKDTPLFSEARTSLYSEDDCKS 1414
Query: 100 LQDE 103
L++E
Sbjct: 1415 LREE 1418
>gi|216547519 interleukin-1 receptor-associated kinase 3 isoform a
[Homo sapiens]
Length = 596
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 38 LEDPSLSELENFSSEIISFKSMEDLVNEFDEKLNVCFRNYNAKTENLA 85
L+DP +L + E++ + ++ ++ D+K+ C RN++AK LA
Sbjct: 375 LDDPKHIQLRDLLRELMEKRGLDSCLSFLDKKVPPCPRNFSAKLFCLA 422
>gi|216547504 interleukin-1 receptor-associated kinase 3 isoform b
[Homo sapiens]
Length = 535
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 38 LEDPSLSELENFSSEIISFKSMEDLVNEFDEKLNVCFRNYNAKTENLA 85
L+DP +L + E++ + ++ ++ D+K+ C RN++AK LA
Sbjct: 314 LDDPKHIQLRDLLRELMEKRGLDSCLSFLDKKVPPCPRNFSAKLFCLA 361
>gi|225735631 mesoderm induction early response 1 isoform g [Homo
sapiens]
Length = 470
Score = 29.6 bits (65), Expect = 0.53
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 38 LEDPSLSELE-NFSSEIISFKSMEDLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEE 96
LE+ + E E NFSSEI EDL E D ++ Y + P +++ + +EE
Sbjct: 56 LEEEEMMEGETNFSSEI------EDLAREGDMPIHELLSLYGYGSTVRLPEEDEEEEEEE 109
Query: 97 EETLQDEE 104
EE DE+
Sbjct: 110 EEGEDDED 117
>gi|225735617 mesoderm induction early response 1 isoform h [Homo
sapiens]
Length = 485
Score = 29.6 bits (65), Expect = 0.53
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 38 LEDPSLSELE-NFSSEIISFKSMEDLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEE 96
LE+ + E E NFSSEI EDL E D ++ Y + P +++ + +EE
Sbjct: 12 LEEEEMMEGETNFSSEI------EDLAREGDMPIHELLSLYGYGSTVRLPEEDEEEEEEE 65
Query: 97 EETLQDEE 104
EE DE+
Sbjct: 66 EEGEDDED 73
>gi|225735615 mesoderm induction early response 1 isoform a [Homo
sapiens]
Length = 529
Score = 29.6 bits (65), Expect = 0.53
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 38 LEDPSLSELE-NFSSEIISFKSMEDLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEE 96
LE+ + E E NFSSEI EDL E D ++ Y + P +++ + +EE
Sbjct: 56 LEEEEMMEGETNFSSEI------EDLAREGDMPIHELLSLYGYGSTVRLPEEDEEEEEEE 109
Query: 97 EETLQDEE 104
EE DE+
Sbjct: 110 EEGEDDED 117
>gi|118130872 mesoderm induction early response 1 isoform f [Homo
sapiens]
Length = 433
Score = 29.6 bits (65), Expect = 0.53
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 38 LEDPSLSELE-NFSSEIISFKSMEDLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEE 96
LE+ + E E NFSSEI EDL E D ++ Y + P +++ + +EE
Sbjct: 39 LEEEEMMEGETNFSSEI------EDLAREGDMPIHELLSLYGYGSTVRLPEEDEEEEEEE 92
Query: 97 EETLQDEE 104
EE DE+
Sbjct: 93 EEGEDDED 100
>gi|225735612 mesoderm induction early response 1 isoform e [Homo
sapiens]
Length = 486
Score = 29.6 bits (65), Expect = 0.53
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 38 LEDPSLSELE-NFSSEIISFKSMEDLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEE 96
LE+ + E E NFSSEI EDL E D ++ Y + P +++ + +EE
Sbjct: 92 LEEEEMMEGETNFSSEI------EDLAREGDMPIHELLSLYGYGSTVRLPEEDEEEEEEE 145
Query: 97 EETLQDEE 104
EE DE+
Sbjct: 146 EEGEDDED 153
>gi|225735610 mesoderm induction early response 1 isoform d [Homo
sapiens]
Length = 450
Score = 29.6 bits (65), Expect = 0.53
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 38 LEDPSLSELE-NFSSEIISFKSMEDLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEE 96
LE+ + E E NFSSEI EDL E D ++ Y + P +++ + +EE
Sbjct: 56 LEEEEMMEGETNFSSEI------EDLAREGDMPIHELLSLYGYGSTVRLPEEDEEEEEEE 109
Query: 97 EETLQDEE 104
EE DE+
Sbjct: 110 EEGEDDED 117
>gi|118130815 mesoderm induction early response 1 isoform c [Homo
sapiens]
Length = 512
Score = 29.6 bits (65), Expect = 0.53
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 38 LEDPSLSELE-NFSSEIISFKSMEDLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEE 96
LE+ + E E NFSSEI EDL E D ++ Y + P +++ + +EE
Sbjct: 39 LEEEEMMEGETNFSSEI------EDLAREGDMPIHELLSLYGYGSTVRLPEEDEEEEEEE 92
Query: 97 EETLQDEE 104
EE DE+
Sbjct: 93 EEGEDDED 100
>gi|225735607 mesoderm induction early response 1 isoform b [Homo
sapiens]
Length = 565
Score = 29.6 bits (65), Expect = 0.53
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 38 LEDPSLSELE-NFSSEIISFKSMEDLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEE 96
LE+ + E E NFSSEI EDL E D ++ Y + P +++ + +EE
Sbjct: 92 LEEEEMMEGETNFSSEI------EDLAREGDMPIHELLSLYGYGSTVRLPEEDEEEEEEE 145
Query: 97 EETLQDEE 104
EE DE+
Sbjct: 146 EEGEDDED 153
>gi|225735605 mesoderm induction early response 1 isoform a [Homo
sapiens]
Length = 529
Score = 29.6 bits (65), Expect = 0.53
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 38 LEDPSLSELE-NFSSEIISFKSMEDLVNEFDEKLNVCFRNYNAKTENLAPVKNQLQIQEE 96
LE+ + E E NFSSEI EDL E D ++ Y + P +++ + +EE
Sbjct: 56 LEEEEMMEGETNFSSEI------EDLAREGDMPIHELLSLYGYGSTVRLPEEDEEEEEEE 109
Query: 97 EETLQDEE 104
EE DE+
Sbjct: 110 EEGEDDED 117
>gi|118498352 M-phase phosphoprotein 6 [Homo sapiens]
Length = 160
Score = 29.6 bits (65), Expect = 0.53
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 24 EEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSMEDLVNEFDEKLNVCFRNYNAKTEN 83
EE+ + +L+ P L E E+F E SF EDL+ + FR +N + E
Sbjct: 32 EEEEKKIISEEHWYLDLPELKEKESFIIEEQSFLLCEDLLYG-----RMSFRGFNPEVEK 86
Query: 84 LAPVKNQLQIQEEEETLQDE 103
L Q+ + + E ++DE
Sbjct: 87 L---MLQMNAKHKAEEVEDE 103
>gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo
sapiens]
Length = 1998
Score = 29.3 bits (64), Expect = 0.69
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 44 SELENFSSEIISFKSMEDLVNEFDEKLNVCFRNYNAKTENL-APVKNQLQIQEEEETLQD 102
S+ EN ++E F S DL E EKLN + T ++ APV+ Q + E EETL+
Sbjct: 1111 SDFENLNTE--DFSSESDL-EESKEKLNESSSSSEGSTVDIGAPVEEQ-PVVEPEETLEP 1166
Query: 103 E 103
E
Sbjct: 1167 E 1167
>gi|66529396 paraoxonase 2 isoform 2 [Homo sapiens]
Length = 342
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 2 EAPLVSLDEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENF 49
E L+ L +L PS ++ P FY ++ H+ DP L LE +
Sbjct: 137 ENSLLHLKTVKHELLPSVNDITAVGPAHFYATNDHYFSDPFLKYLETY 184
>gi|66529294 paraoxonase 2 isoform 1 [Homo sapiens]
Length = 354
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 2 EAPLVSLDEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDPSLSELENF 49
E L+ L +L PS ++ P FY ++ H+ DP L LE +
Sbjct: 149 ENSLLHLKTVKHELLPSVNDITAVGPAHFYATNDHYFSDPFLKYLETY 196
>gi|7662126 signal-induced proliferation-associated 1 like 1 [Homo
sapiens]
Length = 1804
Score = 28.9 bits (63), Expect = 0.91
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 5 LVSLDEEFEDLRPS--CSEDPEEKPQCFYGSSPHHLEDPSLSELENFSSEIISFKSMEDL 62
LV + +E R S + D +P S+ LED +L++++ +SS S ++
Sbjct: 1682 LVDAAKAYEVQRASFFAASDENHRPLSA-ASNSDQLEDQALAQMKPYSSSKDSSPTLASK 1740
Query: 63 VNEFDEKLNVCFRNYNAKTENLAPVKNQLQ-IQEEEETLQDE 103
V++ + L + + + E+ A ++ ++Q ++E+ LQ+E
Sbjct: 1741 VDQLEGMLKMLREDLKKEKEDKAHLQAEVQHLREDNLRLQEE 1782
>gi|4504789 1D-myo-inositol-trisphosphate 3-kinase A [Homo sapiens]
Length = 461
Score = 28.9 bits (63), Expect = 0.91
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 4 PLVSLDEEFEDLRPSCSEDPEEKPQCFYGSSPHHLEDP---SLSELENFSSEIISFKSME 60
P +++ E D+ P+ PE + C + HL+ P S S + + S + S +
Sbjct: 80 PQLTVTAEEPDVPPTSPGPPERERDCLPAAGSSHLQQPRRLSTSSVSSTGSSSLLEDSED 139
Query: 61 DLVNEFDEK 69
DL+++ + +
Sbjct: 140 DLLSDSESR 148
>gi|189011568 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 9 DEEFEDLRPSCSEDPEEKPQCF-YGSSPHHLEDPSLSELENFSSEIISFKSMEDLVNE 65
+E ++ P S+ KPQ Y H+ED + N S +S S +DL+ E
Sbjct: 1984 NEPIKETEPPDSQGEPSKPQASGYAPKSFHVEDTPVCFSRNSSLSSLSIDSEDDLLQE 2041
>gi|189011566 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 9 DEEFEDLRPSCSEDPEEKPQCF-YGSSPHHLEDPSLSELENFSSEIISFKSMEDLVNE 65
+E ++ P S+ KPQ Y H+ED + N S +S S +DL+ E
Sbjct: 1984 NEPIKETEPPDSQGEPSKPQASGYAPKSFHVEDTPVCFSRNSSLSSLSIDSEDDLLQE 2041
>gi|53759122 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 9 DEEFEDLRPSCSEDPEEKPQCF-YGSSPHHLEDPSLSELENFSSEIISFKSMEDLVNE 65
+E ++ P S+ KPQ Y H+ED + N S +S S +DL+ E
Sbjct: 1984 NEPIKETEPPDSQGEPSKPQASGYAPKSFHVEDTPVCFSRNSSLSSLSIDSEDDLLQE 2041
>gi|222537743 protein tyrosine phosphatase, receptor type, Q [Homo
sapiens]
Length = 2299
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 38 LEDPSLSELENFSSEIISFKSMEDLVNEFDEKLNVCFRNYNA--KTENLAPVKNQLQIQE 95
L + ++N + I + + DL++ +CF NY+A K ++L ++ ++++
Sbjct: 2235 LRSERMCMVQNLAQYIFLHQCILDLLSNKGSNQPICFVNYSALQKMDSLDAMEGDVELEW 2294
Query: 96 EEETL 100
EE T+
Sbjct: 2295 EETTM 2299
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.128 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,524,325
Number of Sequences: 37866
Number of extensions: 204469
Number of successful extensions: 742
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 85
length of query: 104
length of database: 18,247,518
effective HSP length: 75
effective length of query: 29
effective length of database: 15,407,568
effective search space: 446819472
effective search space used: 446819472
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.