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Search of human proteins with 24497556
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24497556 homeobox A7 [Homo sapiens]
(230 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24497556 homeobox A7 [Homo sapiens] 476 e-135
gi|85068580 homeobox B7 [Homo sapiens] 245 3e-65
gi|12056969 homeobox C8 [Homo sapiens] 149 1e-36
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 143 1e-34
gi|13273317 homeobox B8 [Homo sapiens] 141 4e-34
gi|23503237 homeobox B6 [Homo sapiens] 140 9e-34
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 139 3e-33
gi|24497517 homeobox A5 [Homo sapiens] 136 1e-32
gi|4504469 homeobox B5 [Homo sapiens] 133 1e-31
gi|13489077 homeobox A6 [Homo sapiens] 131 6e-31
gi|24497538 homeobox C4 [Homo sapiens] 129 2e-30
gi|24497540 homeobox C4 [Homo sapiens] 129 2e-30
gi|15029506 homeobox D8 [Homo sapiens] 124 5e-29
gi|11321638 homeobox C5 [Homo sapiens] 123 2e-28
gi|13273315 homeobox B4 [Homo sapiens] 122 2e-28
gi|23397672 homeobox D4 [Homo sapiens] 122 3e-28
gi|148613882 homeobox A4 [Homo sapiens] 122 3e-28
gi|19923391 homeobox D3 [Homo sapiens] 100 1e-21
gi|194363768 homeobox D9 [Homo sapiens] 100 1e-21
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 96 3e-20
gi|24497515 homeobox A3 isoform b [Homo sapiens] 94 7e-20
gi|24497513 homeobox A3 isoform a [Homo sapiens] 94 7e-20
gi|13562112 homeobox A3 isoform a [Homo sapiens] 94 7e-20
gi|84570137 homeobox B3 [Homo sapiens] 94 1e-19
gi|24497547 homeobox C9 [Homo sapiens] 90 1e-18
gi|10140847 homeobox A2 [Homo sapiens] 89 3e-18
gi|15029508 homeobox B9 [Homo sapiens] 89 3e-18
gi|24497526 homeobox B1 [Homo sapiens] 89 3e-18
gi|23097236 homeobox A9 [Homo sapiens] 87 9e-18
gi|182765442 homeobox A10 isoform a [Homo sapiens] 87 9e-18
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 476 bits (1225), Expect = e-135
Identities = 230/230 (100%), Positives = 230/230 (100%)
Query: 1 MSSSYYVNALFSKYTAGASLFQNAEPTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSP 60
MSSSYYVNALFSKYTAGASLFQNAEPTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSP
Sbjct: 1 MSSSYYVNALFSKYTAGASLFQNAEPTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSP 60
Query: 61 LYQSPFASGYGLGADAYGNLPCASYDQNIPGLCSDLAKGACDKTDEGALHGAAEANFRIY 120
LYQSPFASGYGLGADAYGNLPCASYDQNIPGLCSDLAKGACDKTDEGALHGAAEANFRIY
Sbjct: 61 LYQSPFASGYGLGADAYGNLPCASYDQNIPGLCSDLAKGACDKTDEGALHGAAEANFRIY 120
Query: 121 PWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 180
PWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN
Sbjct: 121 PWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 180
Query: 181 RRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE 230
RRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE
Sbjct: 181 RRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE 230
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 245 bits (625), Expect = 3e-65
Identities = 134/235 (57%), Positives = 161/235 (68%), Gaps = 29/235 (12%)
Query: 1 MSSSYYVNALFSKYTAGASLFQNA---EPTSCSFAPNSQRSGYGAGAGA-FASTVPGLY- 55
MSS YY N LFSKY A +S+F E TSC+FA N QR GYGAG+GA FA+++ GLY
Sbjct: 1 MSSLYYANTLFSKYPASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYP 60
Query: 56 ---NVNSPLYQSPFASGYGLGADAYGNLPCASYDQNIPGLC---SDLAKGACDKTDEGAL 109
+ +A+GYGL ++ N+ CA ++QN+ G+C S A GA ++ D
Sbjct: 61 GGGGMAGQSAAGVYAAGYGLEPSSF-NMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDL- 118
Query: 110 HGAAEANFRIYPWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 169
AAE+NFRIYPWMRSSG DRKRGRQTYTRYQTLELEKEFH+NRYLTRRRRIEIAH LCL
Sbjct: 119 --AAESNFRIYPWMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCL 176
Query: 170 TERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEE 224
TERQIKIWFQNRRMKWKKE+K GP T D+A+ E+++EE
Sbjct: 177 TERQIKIWFQNRRMKWKKENKTAGP--------------GTTGQDRAEAEEEEEE 217
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 149 bits (377), Expect = 1e-36
Identities = 105/258 (40%), Positives = 133/258 (51%), Gaps = 53/258 (20%)
Query: 3 SSYYVNALFSKYTAGASLFQNAEPT--SCSFAPNSQRSG---YGAGAGAFASTVPGLYNV 57
SSY+VN LFSKY AG SL EP C F + RS YG G A PG +
Sbjct: 2 SSYFVNPLFSKYKAGESL----EPAYYDCRFPQSVGRSHALVYGPGGSA-----PGFQHA 52
Query: 58 NSPLYQSPFASGYGLGADAYGNLPCA-----------SYD----QNIPGLCS-------- 94
+ + G+ Y PC+ Y+ Q++ G
Sbjct: 53 SHHVQDFFHHGTSGISNSGYQQNPCSLSCHGDASKFYGYEALPRQSLYGAQQEASVVQYP 112
Query: 95 DLAKGACDKTDEGALH-GAAEANFRIYPWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNR 153
D A + EG H + ++PWMR P R+ GRQTY+RYQTLELEKEF FN
Sbjct: 113 DCKSSANTNSSEGQGHLNQNSSPSLMFPWMRPHAPGRRSGRQTYSRYQTLELEKEFLFNP 172
Query: 154 YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE-HKDEGPTAAAAPEGAVPSAAATAA 212
YLTR+RRIE++HAL LTERQ+KIWFQNRRMKWKKE +KD+ P A
Sbjct: 173 YLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLPGA--------------RD 218
Query: 213 ADKADEEDDDEEEEDEEE 230
+K +EE ++EEE++EEE
Sbjct: 219 EEKVEEEGNEEEEKEEEE 236
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 143 bits (361), Expect = 1e-34
Identities = 92/239 (38%), Positives = 126/239 (52%), Gaps = 17/239 (7%)
Query: 3 SSYYVNALFSKYTAGAS-LFQNAEPTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSPL 61
+SY+ N S + AG + N S ++ P S YGA Y+ +
Sbjct: 2 NSYFTNPSLSCHLAGGQDVLPNVALNSTAYDPVRHFSTYGAAVAQNRIYSTPFYSPQENV 61
Query: 62 YQSPFASGYGLGADAYGNLP--CASYDQNIPGLCSDLAKGACDKTDEGALHGAAE-ANFR 118
S Y G++++ ++ QN G + + +++G + A+ +
Sbjct: 62 VFSSSRGPYDYGSNSFYQEKDMLSNCRQNTLGHNTQTSIAQDFSSEQGRTAPQDQKASIQ 121
Query: 119 IYPWMRSS--------GPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 170
IYPWM+ G DR+RGRQ Y+RYQTLELEKEFHFNRYLTRRRRIEIA+ALCLT
Sbjct: 122 IYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLT 181
Query: 171 ERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEEDEE 229
ERQIKIWFQNRRMKWKKE + G A A + K ++ ++ EEE+ +E
Sbjct: 182 ERQIKIWFQNRRMKWKKE-----SNLTSTLSGGGGGATADSLGGKEEKREETEEEKQKE 235
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 141 bits (356), Expect = 4e-34
Identities = 99/246 (40%), Positives = 132/246 (53%), Gaps = 28/246 (11%)
Query: 3 SSYYVNALFSKYTAGASLFQNAEPTSCSFAPN---SQRSGYGAGAGA---FASTVPGLYN 56
SSY+VN+LFSKY G SL N C FA + YG +G S + Y+
Sbjct: 2 SSYFVNSLFSKYKTGESLRPNYY--DCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYH 59
Query: 57 VNSPLYQSPFASG------YGLGADAYGNLPC---ASYDQNIPGL-----CSDLAKGACD 102
S L +P+ +G + YG P + + P L C A
Sbjct: 60 GPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLG 119
Query: 103 KTDEGALHGAAEANFRIYPWMR-SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRI 161
+ EG+ + +++PWMR + R+RGRQTY+RYQTLELEKEF FN YLTR+RRI
Sbjct: 120 EEAEGSEQSPSPT--QLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRI 177
Query: 162 EIAHALCLTERQIKIWFQNRRMKWKKE-HKDEGPTAAAAPEGAVPS--AAATAAADKADE 218
E++HAL LTERQ+KIWFQNRRMKWKKE +KD+ P++ E A AAD+ D
Sbjct: 178 EVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDA 237
Query: 219 EDDDEE 224
+ D++
Sbjct: 238 QKGDKK 243
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 140 bits (353), Expect = 9e-34
Identities = 99/217 (45%), Positives = 114/217 (52%), Gaps = 41/217 (18%)
Query: 3 SSYYVNALFSKYTA-GASLFQNAEPTSCSFAPNSQR---SGYGAGAG---AFASTVPGLY 55
SSY+VN+ F A G F P S + R + YG G G FA++
Sbjct: 2 SSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSS---- 57
Query: 56 NVNSPLYQSPFASGYGLGADA-YGNLP---------CA-SYDQNIPGLCSDLAKGACDKT 104
Y P GYG A YG P CA S P + K C
Sbjct: 58 ------YYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKSDC--A 109
Query: 105 DEGALHGAAE---ANFRIYPWMR--------SSGPDRKRGRQTYTRYQTLELEKEFHFNR 153
+ ++ G E + +YPWM+ S GP +RGRQTYTRYQTLELEKEFH+NR
Sbjct: 110 QDKSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNR 169
Query: 154 YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 190
YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE K
Sbjct: 170 YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESK 206
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 139 bits (349), Expect = 3e-33
Identities = 71/124 (57%), Positives = 86/124 (69%), Gaps = 13/124 (10%)
Query: 114 EANFRIYPWMRSS--------GPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAH 165
+A+ +IYPWM+ G DR+RGRQ Y+RYQTLELEKEFHFNRYLTRRRRIEIA+
Sbjct: 35 KASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIAN 94
Query: 166 ALCLTERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEE 225
ALCLTERQIKIWFQNRRMKWKKE + G A A + K ++ ++ EEE
Sbjct: 95 ALCLTERQIKIWFQNRRMKWKKE-----SNLTSTLSGGGGGATADSLGGKEEKREETEEE 149
Query: 226 EDEE 229
+ +E
Sbjct: 150 KQKE 153
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 136 bits (343), Expect = 1e-32
Identities = 78/161 (48%), Positives = 95/161 (59%), Gaps = 20/161 (12%)
Query: 59 SPLYQSPFASGYGLGADAYGNLPCASYDQNIPGLCSDLAKGACDKTDEGALHGAAEANFR 118
S + SP + + G ++ N AS D + S G +E A + +A+ +
Sbjct: 104 SAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQ 163
Query: 119 ------------IYPWMRS--------SGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRR 158
IYPWMR GP+ KR R YTRYQTLELEKEFHFNRYLTRR
Sbjct: 164 SEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRR 223
Query: 159 RRIEIAHALCLTERQIKIWFQNRRMKWKKEHKDEGPTAAAA 199
RRIEIAHALCL+ERQIKIWFQNRRMKWKK++K + + AAA
Sbjct: 224 RRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAA 264
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 133 bits (335), Expect = 1e-31
Identities = 65/95 (68%), Positives = 73/95 (76%), Gaps = 7/95 (7%)
Query: 118 RIYPWMRS-------SGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 170
+I+PWMR +GPD KR R YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL+
Sbjct: 175 QIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS 234
Query: 171 ERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVP 205
ERQIKIWFQNRRMKWKK++K + + A A P
Sbjct: 235 ERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP 269
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 131 bits (329), Expect = 6e-31
Identities = 91/197 (46%), Positives = 107/197 (54%), Gaps = 30/197 (15%)
Query: 3 SSYYVNALFSK-YTAGASLFQNAEPTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSPL 61
+SY ++L K YT+ Q+ +C+ R+ Y GA F Y+
Sbjct: 40 ASYGASSLPDKTYTSPCFYQQSNSVLACN------RASYEYGASCF-------YSDKDLS 86
Query: 62 YQSPFASGYGLGADAYGNLPCASYDQNIPGLCSDLAKGACDKTDEGALHGAAEANFRIYP 121
SP SG G Y L + Q P S K DEGA + +YP
Sbjct: 87 GASPSGSGKQRGPGDY--LHFSPEQQYKPDSSSGQGKAL---HDEGA---DRKYTSPVYP 138
Query: 122 WMRSS--------GPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQ 173
WM+ G +RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIA+ALCLTERQ
Sbjct: 139 WMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQ 198
Query: 174 IKIWFQNRRMKWKKEHK 190
IKIWFQNRRMKWKKE+K
Sbjct: 199 IKIWFQNRRMKWKKENK 215
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 129 bits (325), Expect = 2e-30
Identities = 67/144 (46%), Positives = 85/144 (59%), Gaps = 11/144 (7%)
Query: 97 AKGACDKTDEGALHGAAEANFRIYPWMRS----------SGPDRKRGRQTYTRYQTLELE 146
A AC + AA +YPWM+ +G + KR R YTR Q LELE
Sbjct: 113 APPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELE 172
Query: 147 KEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK-DEGPTAAAAPEGAVP 205
KEFH+NRYLTRRRRIEIAH+LCL+ERQIKIWFQNRRMKWKK+H+ +A P GA P
Sbjct: 173 KEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAP 232
Query: 206 SAAATAAADKADEEDDDEEEEDEE 229
S + A +++ +++
Sbjct: 233 STLSAATPGTSEDHSQSATPPEQQ 256
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 129 bits (325), Expect = 2e-30
Identities = 67/144 (46%), Positives = 85/144 (59%), Gaps = 11/144 (7%)
Query: 97 AKGACDKTDEGALHGAAEANFRIYPWMRS----------SGPDRKRGRQTYTRYQTLELE 146
A AC + AA +YPWM+ +G + KR R YTR Q LELE
Sbjct: 113 APPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELE 172
Query: 147 KEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK-DEGPTAAAAPEGAVP 205
KEFH+NRYLTRRRRIEIAH+LCL+ERQIKIWFQNRRMKWKK+H+ +A P GA P
Sbjct: 173 KEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAP 232
Query: 206 SAAATAAADKADEEDDDEEEEDEE 229
S + A +++ +++
Sbjct: 233 STLSAATPGTSEDHSQSATPPEQQ 256
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 124 bits (312), Expect = 5e-29
Identities = 101/288 (35%), Positives = 130/288 (45%), Gaps = 76/288 (26%)
Query: 3 SSYYVNALFSKYTAGASLFQNA----EPT--SCSFAPN---------SQRSGYGAGAGAF 47
SSY+VN L+SKY A A+ A PT C FAP + YG A F
Sbjct: 2 SSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAGF 61
Query: 48 ASTVPGLYNVNSPLYQSPFASGYGL------GADAY---GNLPCASYDQNIPGL------ 92
P + P SP SG G G + + G P A+Y P
Sbjct: 62 PHAPPQAHAHPHP---SPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPP 118
Query: 93 -----CSDLA----------------------------------KGACDKTDEGALH-GA 112
C +A K + E H
Sbjct: 119 PPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQ 178
Query: 113 AEANFRIYPWMR-SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTE 171
+ + +++PWMR + P R+RGRQTY+R+QTLELEKEF FN YLTR+RRIE++HAL LTE
Sbjct: 179 SSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTE 238
Query: 172 RQIKIWFQNRRMKWKKE-HKDEGPTA-AAAPEGAVPSAAATAAADKAD 217
RQ+KIWFQNRRMKWKKE +KD+ P + +G A D+A+
Sbjct: 239 RQVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAE 286
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 123 bits (308), Expect = 2e-28
Identities = 75/143 (52%), Positives = 85/143 (59%), Gaps = 13/143 (9%)
Query: 60 PLYQSPFASGYGLGADAYGNLPCASYDQNI--PGLCSDLAKGACDKTDEGALHGAAE--- 114
P + A G+ G D L Y Q P L + AK + + +E A G
Sbjct: 74 PACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPAL-EERAKSSGEIKEEQAQTGQPAGLS 132
Query: 115 ---ANFRIYPWMR----SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL 167
A +IYPWM S D KR R +YTRYQTLELEKEFHFNRYLTRRRRIEIA+ L
Sbjct: 133 QPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNL 192
Query: 168 CLTERQIKIWFQNRRMKWKKEHK 190
CL ERQIKIWFQNRRMKWKK+ K
Sbjct: 193 CLNERQIKIWFQNRRMKWKKDSK 215
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 122 bits (307), Expect = 2e-28
Identities = 57/82 (69%), Positives = 64/82 (78%), Gaps = 10/82 (12%)
Query: 119 IYPWMRS----------SGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 168
+YPWMR +G + KR R YTR Q LELEKEFH+NRYLTRRRR+EIAHALC
Sbjct: 141 VYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALC 200
Query: 169 LTERQIKIWFQNRRMKWKKEHK 190
L+ERQIKIWFQNRRMKWKK+HK
Sbjct: 201 LSERQIKIWFQNRRMKWKKDHK 222
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 122 bits (306), Expect = 3e-28
Identities = 60/104 (57%), Positives = 74/104 (71%), Gaps = 13/104 (12%)
Query: 119 IYPWMRS----------SGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 168
+YPWM+ +G + KR R YTR Q LELEKEFHFNRYLTRRRRIEIAH LC
Sbjct: 133 VYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 192
Query: 169 LTERQIKIWFQNRRMKWKKEHK---DEGPTAAAAPEGAVPSAAA 209
L+ERQIKIWFQNRRMKWKK+HK +G +++++ + S+ A
Sbjct: 193 LSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSSCSSSVA 236
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 122 bits (305), Expect = 3e-28
Identities = 60/102 (58%), Positives = 69/102 (67%), Gaps = 18/102 (17%)
Query: 119 IYPWMRS----------SGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 168
+YPWM+ +G + KR R YTR Q LELEKEFHFNRYLTRRRRIEIAH LC
Sbjct: 194 VYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 253
Query: 169 LTERQIKIWFQNRRMKWKKEHK--------DEGPTAAAAPEG 202
L+ERQ+KIWFQNRRMKWKK+HK +A+A P G
Sbjct: 254 LSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPG 295
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 100 bits (249), Expect = 1e-21
Identities = 59/133 (44%), Positives = 74/133 (55%), Gaps = 26/133 (19%)
Query: 103 KTDEGALHGAAEANFRIYPWMRSS-----------------------GPDRKRGRQTYTR 139
K A +A + +I+PWM+ S GP KR R YT
Sbjct: 144 KGGPNASSSSATISKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTS 203
Query: 140 YQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKDEG---PTA 196
Q +ELEKEFHFNRYL R RR+E+A+ L LTERQIKIWFQNRRMK+KK+ K +G A
Sbjct: 204 AQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPA 263
Query: 197 AAAPEGAVPSAAA 209
+ +PE + P A
Sbjct: 264 SQSPERSPPLGGA 276
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 100 bits (249), Expect = 1e-21
Identities = 69/185 (37%), Positives = 90/185 (48%), Gaps = 19/185 (10%)
Query: 15 TAGASLFQNAEPTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSPLYQSPFASGYGLGA 74
++ SL +++ T CS A SQ S ++ NS L + A+ G G
Sbjct: 179 SSSTSLSSSSKRTECSVARESQGSSGPE------------FSCNSFLQEKAAAATGGTGP 226
Query: 75 DAYGNLPCASYDQNIPGLCSDLAKGACDKTDEGALHGAAEA-----NFRIYPWMRSSGPD 129
A + + P CSD C +E H + N W+ +
Sbjct: 227 GAGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTR 286
Query: 130 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH 189
+KR YT+YQTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK
Sbjct: 287 KKRC--PYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMS 344
Query: 190 KDEGP 194
K++ P
Sbjct: 345 KEKCP 349
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 95.5 bits (236), Expect = 3e-20
Identities = 57/133 (42%), Positives = 69/133 (51%), Gaps = 20/133 (15%)
Query: 106 EGALHGAAEANFRI---YPWMRSSGP-----------------DRKRGRQTYTRYQTLEL 145
EGA G E R+ +PWM+S+ + KR R YTR Q LEL
Sbjct: 102 EGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLEL 161
Query: 146 EKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVP 205
EKEF FN+Y++R RR+E+A L LTER IKIWFQNRRMKWKKE + A G V
Sbjct: 162 EKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVA 221
Query: 206 SAAATAAADKADE 218
A +E
Sbjct: 222 EPEQDCAVTSGEE 234
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 94.4 bits (233), Expect = 7e-20
Identities = 48/82 (58%), Positives = 57/82 (69%), Gaps = 9/82 (10%)
Query: 131 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 190
KR R YT Q +ELEKEFHFNRYL R RR+E+A+ L LTERQIKIWFQNRRMK+KK+ K
Sbjct: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
Query: 191 DEG---------PTAAAAPEGA 203
+G P+ + P GA
Sbjct: 94 GKGMLTSSGGQSPSRSPVPPGA 115
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 94.4 bits (233), Expect = 7e-20
Identities = 48/82 (58%), Positives = 57/82 (69%), Gaps = 9/82 (10%)
Query: 131 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 190
KR R YT Q +ELEKEFHFNRYL R RR+E+A+ L LTERQIKIWFQNRRMK+KK+ K
Sbjct: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251
Query: 191 DEG---------PTAAAAPEGA 203
+G P+ + P GA
Sbjct: 252 GKGMLTSSGGQSPSRSPVPPGA 273
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 94.4 bits (233), Expect = 7e-20
Identities = 48/82 (58%), Positives = 57/82 (69%), Gaps = 9/82 (10%)
Query: 131 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 190
KR R YT Q +ELEKEFHFNRYL R RR+E+A+ L LTERQIKIWFQNRRMK+KK+ K
Sbjct: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251
Query: 191 DEG---------PTAAAAPEGA 203
+G P+ + P GA
Sbjct: 252 GKGMLTSSGGQSPSRSPVPPGA 273
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 94.0 bits (232), Expect = 1e-19
Identities = 47/85 (55%), Positives = 61/85 (71%), Gaps = 3/85 (3%)
Query: 131 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 190
KR R YT Q +ELEKEFHFNRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KK+ K
Sbjct: 189 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK 248
Query: 191 DEGPTAAA---APEGAVPSAAATAA 212
+G +++ +P G+ P + A
Sbjct: 249 AKGLASSSGGPSPAGSPPQPMQSTA 273
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 90.1 bits (222), Expect = 1e-18
Identities = 50/106 (47%), Positives = 67/106 (63%), Gaps = 6/106 (5%)
Query: 87 QNIPGLCSDLAKGACDKTDEGALHGAAEANFRIYPWMRSSGPDRKRGRQTYTRYQTLELE 146
Q +P +D G+ K ++ L + + + W+ + +KR YT+YQTLELE
Sbjct: 155 QTLPSPEADALAGSKHKEEKADL----DPSNPVANWIHARSTRKKRC--PYTKYQTLELE 208
Query: 147 KEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKDE 192
KEF FN YLTR RR E+A L LTERQ+KIWFQNRRMK KK +K++
Sbjct: 209 KEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEK 254
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 89.0 bits (219), Expect = 3e-18
Identities = 52/105 (49%), Positives = 64/105 (60%), Gaps = 14/105 (13%)
Query: 126 SGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKW 185
SG +R R YT Q LELEKEFHFN+YL R RR+EIA L LTERQ+K+WFQNRRMK
Sbjct: 139 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH 198
Query: 186 KKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE 230
K++ + + + EG S ED ++ EEDEEE
Sbjct: 199 KRQTQCKENQNS---EGKCKSL-----------EDSEKVEEDEEE 229
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 89.0 bits (219), Expect = 3e-18
Identities = 44/72 (61%), Positives = 54/72 (75%), Gaps = 2/72 (2%)
Query: 122 WMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 181
W+ + +KR YT+YQTLELEKEF FN YLTR RR E+A L L+ERQ+KIWFQNR
Sbjct: 179 WLHARSSRKKRC--PYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNR 236
Query: 182 RMKWKKEHKDEG 193
RMK KK +K++G
Sbjct: 237 RMKMKKMNKEQG 248
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 89.0 bits (219), Expect = 3e-18
Identities = 68/204 (33%), Positives = 84/204 (41%), Gaps = 42/204 (20%)
Query: 26 PTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSPLYQSPFASGYGLGADAYGNLPCASY 85
P+S GYGAG PG Y P YGN AS+
Sbjct: 113 PSSYGAQLGGLSDGYGAGGAG-----PGPYPPQHP---------------PYGNEQTASF 152
Query: 86 DQNIPGLCSDLAKGACDKTDEGALHGAAEANFRIYPWMRSSGPDRKRG------------ 133
L S+ + C R + WM+ K
Sbjct: 153 APAYADLLSEDKETPCPSEPN-------TPTARTFDWMKVKRNPPKTAKVSEPGLGSPSG 205
Query: 134 -RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKDE 192
R +T Q ELEKEFHFN+YL+R RR+EIA L L E Q+KIWFQNRRMK KK ++E
Sbjct: 206 LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREE 265
Query: 193 GPTAAAAPEGAVPSAAATAAADKA 216
G A P P AA A+D++
Sbjct: 266 GRVPPAPP--GCPKEAAGDASDQS 287
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 87.4 bits (215), Expect = 9e-18
Identities = 44/70 (62%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 122 WMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 181
W+ + +KR YT++QTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNR
Sbjct: 200 WLHARSTRKKRC--PYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNR 257
Query: 182 RMKWKKEHKD 191
RMK KK +KD
Sbjct: 258 RMKMKKINKD 267
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 87.4 bits (215), Expect = 9e-18
Identities = 52/124 (41%), Positives = 75/124 (60%), Gaps = 8/124 (6%)
Query: 68 SGYGLGADAYGNLPCASYDQNIPGLCSDLAKGACDKTDEGALHGAAEANFRIYPWMRSSG 127
SG G D + ++ ++ P S+ +K + +K G G AN W+ +
Sbjct: 282 SGGGSQGDEEAHASSSAAEELSPAP-SESSKASPEKDSLGNSKGENAAN-----WLTAKS 335
Query: 128 PDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 187
+KR YT++QTLELEKEF FN YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK KK
Sbjct: 336 GRKKRC--PYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKK 393
Query: 188 EHKD 191
+++
Sbjct: 394 MNRE 397
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,010,945
Number of Sequences: 37866
Number of extensions: 500346
Number of successful extensions: 9450
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 5623
Number of HSP's gapped (non-prelim): 2711
length of query: 230
length of database: 18,247,518
effective HSP length: 99
effective length of query: 131
effective length of database: 14,498,784
effective search space: 1899340704
effective search space used: 1899340704
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.